Wall clock time and date at job start Mon Mar 30 2020 03:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86803 * 119.99942 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99869 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99726 * 3 2 1 6 6 H 1.48499 * 109.47135 * 150.00067 * 3 2 1 7 7 C 1.40050 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00087 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99840 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00147 * 179.97438 * 9 7 2 12 12 C 1.46498 * 119.99828 * 180.27610 * 11 9 7 13 13 C 1.52996 * 109.47059 * 179.72339 * 12 11 9 14 14 C 1.53003 * 109.47301 * 179.97438 * 13 12 11 15 15 C 1.53003 * 109.47017 * 179.97438 * 14 13 12 16 16 H 1.08998 * 110.45446 * 52.40205 * 15 14 13 17 17 C 1.54514 * 110.50809 * 175.00086 * 15 14 13 18 18 C 1.54477 * 104.06390 * 118.64666 * 17 15 14 19 19 O 1.44429 * 104.80218 * 23.97515 * 18 17 15 20 20 C 1.44427 * 105.27768 * 319.49315 * 19 18 17 21 21 H 0.96996 * 120.00325 * 0.02562 * 1 2 3 22 22 H 0.97001 * 119.99727 * 359.97438 * 11 9 7 23 23 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 24 24 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 25 25 H 1.09004 * 109.47066 * 299.99732 * 13 12 11 26 26 H 1.09000 * 109.47665 * 59.99541 * 13 12 11 27 27 H 1.08990 * 109.47021 * 299.99845 * 14 13 12 28 28 H 1.09002 * 109.46620 * 60.00037 * 14 13 12 29 29 H 1.09003 * 110.50681 * 237.29172 * 17 15 14 30 30 H 1.08995 * 110.51162 * 0.02562 * 17 15 14 31 31 H 1.09000 * 110.37210 * 142.80373 * 18 17 15 32 32 H 1.09002 * 110.37209 * 265.04076 * 18 17 15 33 33 H 1.09003 * 110.36641 * 281.67599 * 20 19 18 34 34 H 1.09000 * 110.37465 * 159.34432 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4881 2.0464 -1.4001 5 1 1.4381 2.6527 0.7000 6 1 3.5382 1.4402 0.7000 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2128 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0005 12 6 1.2165 -4.9164 -0.0056 13 6 2.2107 -6.0793 -0.0112 14 6 1.4458 -7.4043 -0.0169 15 6 2.4401 -8.5672 -0.0232 16 1 3.1618 -8.4556 0.7860 17 6 1.6962 -9.9161 0.0971 18 6 2.0552 -10.6605 -1.2081 19 8 3.3019 -10.0713 -1.6379 20 6 3.1605 -8.6561 -1.3867 21 1 -0.4850 0.8400 -0.0004 22 1 2.9190 -3.6476 0.0002 23 1 0.5899 -4.9784 0.8842 24 1 0.5898 -4.9699 -0.8957 25 1 2.8374 -6.0173 -0.9009 26 1 2.8375 -6.0259 0.8790 27 1 0.8195 -7.4661 0.8729 28 1 0.8188 -7.4580 -0.9070 29 1 2.0520 -10.4725 0.9643 30 1 0.6202 -9.7546 0.1605 31 1 2.1857 -11.7251 -1.0142 32 1 1.2810 -10.5042 -1.9593 33 1 2.5567 -8.1909 -2.1660 34 1 4.1399 -8.1810 -1.3302 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401319175.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:49 Heat of formation + Delta-G solvation = -109.497367 kcal Electronic energy + Delta-G solvation = -15291.187706 eV Core-core repulsion = 12609.037243 eV Total energy + Delta-G solvation = -2682.150463 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.64623 -37.37152 -35.28874 -33.10731 -32.27329 -30.66519 -28.85303 -26.50423 -24.71106 -23.02926 -21.24130 -20.44359 -19.54493 -17.13460 -16.53585 -15.85769 -15.71082 -15.27733 -14.80338 -14.35958 -13.99280 -13.71530 -13.00728 -12.71239 -12.63626 -12.27779 -11.80611 -11.63741 -11.31643 -11.17225 -11.04004 -10.83310 -10.76059 -10.57442 -10.37846 -10.36621 -10.18261 -9.94032 -8.83670 -7.59316 -7.46702 -6.16694 -4.62231 3.15173 3.21761 3.25347 3.81840 4.11792 4.37534 4.55670 4.61233 4.69929 4.88147 4.99315 5.12363 5.19691 5.33761 5.46965 5.54242 5.57237 5.67647 5.69156 5.81917 5.83410 5.93353 5.98468 6.10400 6.23780 6.61592 6.63315 6.64755 7.44968 7.96070 8.13696 8.35348 9.04240 9.56959 10.62390 10.81152 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.071999 B = 0.004043 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.802902 B = 6923.560959 C = 7149.403993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.553 3.447 10 O -0.583 6.583 11 N -0.770 5.770 12 C 0.133 3.867 13 C -0.130 4.130 14 C -0.108 4.108 15 C -0.121 4.121 16 H 0.083 0.917 17 C -0.153 4.153 18 C 0.044 3.956 19 O -0.381 6.381 20 C 0.047 3.953 21 H 0.268 0.732 22 H 0.379 0.621 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.409 -16.181 -0.436 17.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.085 0.915 9 C 0.357 3.643 10 O -0.466 6.466 11 N -0.425 5.425 12 C 0.007 3.993 13 C -0.168 4.168 14 C -0.146 4.146 15 C -0.140 4.140 16 H 0.102 0.898 17 C -0.191 4.191 18 C -0.033 4.033 19 O -0.299 6.299 20 C -0.029 4.029 21 H 0.079 0.921 22 H 0.211 0.789 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.494 -16.188 -0.522 16.808 hybrid contribution 0.709 0.905 0.118 1.156 sum 5.204 -15.283 -0.405 16.150 Atomic orbital electron populations 1.70020 1.07073 1.27215 1.35476 1.25715 0.94616 1.00300 0.92627 0.86372 0.80139 0.81410 0.78810 1.19754 1.20471 1.18925 1.20901 0.93572 0.89478 1.54424 0.91456 1.18231 0.87216 0.82542 0.76324 1.90594 1.14134 1.86951 1.54879 1.46134 1.08516 1.05075 1.82781 1.20855 0.94064 0.83859 1.00483 1.21821 0.98765 0.94006 1.02160 1.21587 0.97364 0.92900 1.02715 1.22581 0.98024 0.94832 0.98527 0.89831 1.23030 1.01427 0.96011 0.98609 1.23401 0.86809 0.98237 0.94868 1.89106 1.35533 1.20044 1.85257 1.23584 1.01311 0.82454 0.95572 0.92140 0.78941 0.93586 0.93603 0.91784 0.91722 0.91289 0.91515 0.90798 0.90220 0.89415 0.92326 0.91851 0.89054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.40 11.83 55.55 0.66 -22.74 16 2 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16 3 Si 0.91 20.30 29.56 -169.99 -5.02 15.27 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.55 -15.69 9.54 -35.63 -0.34 -16.03 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 9 C 0.55 16.09 7.75 -12.99 -0.10 15.99 16 10 O -0.58 -19.30 15.02 5.20 0.08 -19.23 16 11 N -0.77 -17.47 5.55 -61.72 -0.34 -17.81 16 12 C 0.13 2.53 5.67 -4.04 -0.02 2.51 16 13 C -0.13 -1.74 5.21 -26.73 -0.14 -1.88 16 14 C -0.11 -1.20 4.43 -26.73 -0.12 -1.32 16 15 C -0.12 -1.19 3.11 -89.05 -0.28 -1.47 16 16 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 17 C -0.15 -1.32 6.74 -25.16 -0.17 -1.49 16 18 C 0.04 0.40 7.63 37.93 0.29 0.69 16 19 O -0.38 -4.53 11.65 -35.23 -0.41 -4.94 16 20 C 0.05 0.50 6.51 37.93 0.25 0.75 16 21 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 22 H 0.38 7.49 8.45 -40.82 -0.35 7.15 16 23 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.06 0.82 7.63 -51.93 -0.40 0.42 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.75 7.96 -51.93 -0.41 0.34 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.64 7.73 -51.93 -0.40 0.23 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.67 7.74 -51.93 -0.40 0.26 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 285.96 15.07 4.31 4.31 Total: -1.00 -34.93 285.96 -6.77 -41.70 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -5.31 Total: 3.33 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -0.73 Total: 0.11 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.31 Total: -40.55 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.33 Total: -24.17 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -34.93 -6.77 -41.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401319175.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.801 kcal (2) G-P(sol) polarization free energy of solvation -34.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds