Wall clock time and date at job start Mon Mar 30 2020 03:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86803 * 119.99942 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99869 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99726 * 3 2 1 6 6 H 1.48499 * 109.47135 * 150.00067 * 3 2 1 7 7 C 1.40050 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00087 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99840 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00147 * 179.97438 * 9 7 2 12 12 C 1.46498 * 119.99828 * 180.27610 * 11 9 7 13 13 C 1.52996 * 109.47059 * 179.72339 * 12 11 9 14 14 C 1.53003 * 109.47301 * 179.97438 * 13 12 11 15 15 C 1.53003 * 109.47017 * 179.97438 * 14 13 12 16 16 H 1.08998 * 110.45446 * 52.40205 * 15 14 13 17 17 C 1.54514 * 110.50809 * 175.00086 * 15 14 13 18 18 C 1.54477 * 104.06390 * 118.64666 * 17 15 14 19 19 O 1.44429 * 104.80218 * 23.97515 * 18 17 15 20 20 C 1.44427 * 105.27768 * 319.49315 * 19 18 17 21 21 H 0.96996 * 120.00325 * 0.02562 * 1 2 3 22 22 H 0.97001 * 119.99727 * 359.97438 * 11 9 7 23 23 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 24 24 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 25 25 H 1.09004 * 109.47066 * 299.99732 * 13 12 11 26 26 H 1.09000 * 109.47665 * 59.99541 * 13 12 11 27 27 H 1.08990 * 109.47021 * 299.99845 * 14 13 12 28 28 H 1.09002 * 109.46620 * 60.00037 * 14 13 12 29 29 H 1.09003 * 110.50681 * 237.29172 * 17 15 14 30 30 H 1.08995 * 110.51162 * 0.02562 * 17 15 14 31 31 H 1.09000 * 110.37210 * 142.80373 * 18 17 15 32 32 H 1.09002 * 110.37209 * 265.04076 * 18 17 15 33 33 H 1.09003 * 110.36641 * 281.67599 * 20 19 18 34 34 H 1.09000 * 110.37465 * 159.34432 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4881 2.0464 -1.4001 5 1 1.4381 2.6527 0.7000 6 1 3.5382 1.4402 0.7000 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2128 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0005 12 6 1.2165 -4.9164 -0.0056 13 6 2.2107 -6.0793 -0.0112 14 6 1.4458 -7.4043 -0.0169 15 6 2.4401 -8.5672 -0.0232 16 1 3.1618 -8.4556 0.7860 17 6 1.6962 -9.9161 0.0971 18 6 2.0552 -10.6605 -1.2081 19 8 3.3019 -10.0713 -1.6379 20 6 3.1605 -8.6561 -1.3867 21 1 -0.4850 0.8400 -0.0004 22 1 2.9190 -3.6476 0.0002 23 1 0.5899 -4.9784 0.8842 24 1 0.5898 -4.9699 -0.8957 25 1 2.8374 -6.0173 -0.9009 26 1 2.8375 -6.0259 0.8790 27 1 0.8195 -7.4661 0.8729 28 1 0.8188 -7.4580 -0.9070 29 1 2.0520 -10.4725 0.9643 30 1 0.6202 -9.7546 0.1605 31 1 2.1857 -11.7251 -1.0142 32 1 1.2810 -10.5042 -1.9593 33 1 2.5567 -8.1909 -2.1660 34 1 4.1399 -8.1810 -1.3302 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401319175.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:49 Heat of formation + Delta-G solvation = -135.459814 kcal Electronic energy + Delta-G solvation = -15292.313522 eV Core-core repulsion = 12609.037243 eV Total energy + Delta-G solvation = -2683.276280 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.45688 -39.40805 -36.65435 -34.81079 -34.24821 -31.82501 -29.94631 -28.39135 -26.06398 -23.93534 -22.44348 -21.80952 -21.06096 -19.15198 -17.48812 -17.29001 -16.76988 -16.69340 -15.99726 -15.89512 -15.88012 -14.88902 -14.39952 -14.21436 -13.73901 -13.60135 -13.25936 -13.04745 -12.76608 -12.63917 -12.51173 -12.34526 -12.02975 -11.96917 -11.70009 -11.48269 -11.33007 -10.93516 -10.73845 -9.88029 -9.48179 -8.29544 -6.86480 1.40677 1.42426 1.57944 2.25223 2.46664 3.02930 3.17097 3.61219 3.66439 3.78734 3.92392 4.13555 4.19901 4.31896 4.35621 4.47897 4.67879 4.73505 4.74593 4.87475 4.89135 4.95376 5.00592 5.11959 5.19507 5.31549 5.33864 5.40152 5.86769 5.88169 6.24836 6.28375 6.86103 7.55887 8.48788 8.67036 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.071999 B = 0.004043 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.802902 B = 6923.560959 C = 7149.403993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.026 3.974 3 Si 1.001 2.999 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.248 1.248 7 C -0.575 4.575 8 H 0.089 0.911 9 C 0.533 3.467 10 O -0.636 6.636 11 N -0.757 5.757 12 C 0.132 3.868 13 C -0.113 4.113 14 C -0.101 4.101 15 C -0.115 4.115 16 H 0.089 0.911 17 C -0.150 4.150 18 C 0.038 3.962 19 O -0.403 6.403 20 C 0.043 3.957 21 H 0.275 0.725 22 H 0.396 0.604 23 H 0.029 0.971 24 H 0.028 0.972 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.262 -16.312 -0.202 17.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.189 4.189 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.171 1.171 7 C -0.612 4.612 8 H 0.107 0.893 9 C 0.337 3.663 10 O -0.524 6.524 11 N -0.412 5.412 12 C 0.007 3.993 13 C -0.151 4.151 14 C -0.139 4.139 15 C -0.134 4.134 16 H 0.108 0.892 17 C -0.188 4.188 18 C -0.039 4.039 19 O -0.322 6.322 20 C -0.033 4.033 21 H 0.084 0.916 22 H 0.230 0.770 23 H 0.047 0.953 24 H 0.046 0.954 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.121 0.879 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.396 -16.376 -0.288 17.584 hybrid contribution 0.108 0.862 0.034 0.869 sum 6.504 -15.515 -0.254 16.825 Atomic orbital electron populations 1.70191 1.09628 1.28983 1.36500 1.27029 0.95554 1.05122 0.91158 0.84976 0.78738 0.74845 0.79437 1.18582 1.19801 1.17111 1.21469 0.94813 0.90124 1.54755 0.89291 1.18682 0.86875 0.84613 0.76114 1.90545 1.16334 1.88117 1.57356 1.45834 1.09383 1.04913 1.81048 1.21008 0.95125 0.84319 0.98817 1.21708 0.97582 0.92513 1.03311 1.21523 0.97487 0.92129 1.02800 1.22508 0.97737 0.94763 0.98388 0.89233 1.23031 1.01747 0.95212 0.98796 1.23585 0.86047 0.99094 0.95142 1.89083 1.36912 1.20635 1.85615 1.23652 1.01706 0.82164 0.95797 0.91552 0.77017 0.95260 0.95380 0.90652 0.90465 0.91079 0.91696 0.89756 0.89539 0.87903 0.91947 0.92167 0.88501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.17 11.83 21.84 0.26 -50.91 16 2 C 0.03 1.48 5.50 85.31 0.47 1.95 16 3 Si 1.00 41.11 29.56 68.60 2.03 43.14 16 4 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 6 H -0.25 -9.40 7.11 99.48 0.71 -8.70 16 7 C -0.58 -33.04 9.54 24.83 0.24 -32.80 16 8 H 0.09 4.54 7.85 -2.91 -0.02 4.52 16 9 C 0.53 31.67 7.75 86.36 0.67 32.34 16 10 O -0.64 -43.77 15.02 -4.33 -0.06 -43.84 16 11 N -0.76 -34.47 5.55 -467.41 -2.59 -37.06 16 12 C 0.13 5.08 5.67 86.38 0.49 5.57 16 13 C -0.11 -2.87 5.21 30.59 0.16 -2.71 16 14 C -0.10 -2.10 4.43 30.60 0.14 -1.97 16 15 C -0.12 -2.03 3.11 -9.78 -0.03 -2.06 16 16 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 17 C -0.15 -2.27 6.74 31.61 0.21 -2.05 16 18 C 0.04 0.62 7.63 72.48 0.55 1.17 16 19 O -0.40 -8.99 11.65 -148.98 -1.74 -10.72 16 20 C 0.04 0.84 6.51 72.48 0.47 1.31 16 21 H 0.27 15.40 8.29 -92.71 -0.77 14.63 16 22 H 0.40 15.24 8.45 -92.71 -0.78 14.45 16 23 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 24 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.07 1.77 7.63 -2.38 -0.02 1.75 16 26 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.06 1.38 7.96 -2.39 -0.02 1.37 16 29 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.09 1.19 7.73 -2.39 -0.02 1.17 16 31 H 0.10 1.33 8.14 -2.39 -0.02 1.32 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 1.19 7.74 -2.39 -0.02 1.17 16 34 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -77.34 285.96 1.55 -75.79 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 0.30 Total: 22.86 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 3.37 Total: 0.75 kcal Atomic # 7 Polarization: -85.64 SS G_CDS: -2.34 Total: -87.98 kcal Atomic # 8 Polarization: -52.76 SS G_CDS: -1.80 Total: -54.56 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -77.34 1.55 -75.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401319175.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.671 kcal (2) G-P(sol) polarization free energy of solvation -77.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds