Wall clock time and date at job start Mon Mar 30 2020 02:44:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46505 * 1
3 3 C 1.36934 * 120.00092 * 2 1
4 4 H 1.07998 * 119.99708 * 156.84661 * 3 2 1
5 5 C 1.38806 * 120.00196 * 336.85949 * 3 2 1
6 6 N 1.31618 * 120.00291 * 175.87721 * 5 3 2
7 7 Si 1.86808 * 120.00051 * 355.87727 * 5 3 2
8 8 H 1.48493 * 109.47157 * 157.67896 * 7 5 3
9 9 H 1.48500 * 109.47004 * 277.68123 * 7 5 3
10 10 H 1.48504 * 109.46846 * 37.67984 * 7 5 3
11 11 C 1.46498 * 119.99831 * 180.02562 * 2 1 3
12 12 C 1.52458 * 108.70219 * 208.61717 * 11 2 1
13 13 C 1.54741 * 109.28049 * 57.40336 * 12 11 2
14 14 H 1.09000 * 114.65111 * 196.40194 * 13 12 11
15 15 C 1.54971 * 105.19969 * 322.92172 * 13 12 11
16 16 C 1.52458 * 111.72108 * 81.08336 * 15 13 12
17 17 C 1.54967 * 111.71928 * 359.97438 * 16 15 13
18 18 H 1.08998 * 114.36930 * 152.81341 * 17 16 15
19 19 C 1.52459 * 108.79446 * 331.96414 * 11 2 1
20 20 S 1.84393 * 105.03271 * 69.99818 * 13 12 11
21 21 H 1.08993 * 109.47179 * 84.22383 * 1 2 3
22 22 H 1.08998 * 109.46886 * 204.22404 * 1 2 3
23 23 H 1.09003 * 109.47000 * 324.21930 * 1 2 3
24 24 H 0.97001 * 120.00195 * 179.97438 * 6 5 3
25 25 H 1.09007 * 108.75869 * 90.31575 * 11 2 1
26 26 H 1.09004 * 109.50909 * 177.34829 * 12 11 2
27 27 H 1.09003 * 109.50019 * 297.42337 * 12 11 2
28 28 H 1.08999 * 109.04069 * 201.67725 * 15 13 12
29 29 H 1.08993 * 108.94663 * 320.55378 * 15 13 12
30 30 H 1.08997 * 109.03763 * 239.40165 * 16 15 13
31 31 H 1.09005 * 109.03856 * 120.47159 * 16 15 13
32 32 H 1.09000 * 109.50614 * 62.62005 * 19 11 2
33 33 H 1.08998 * 109.50709 * 182.70370 * 19 11 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 3.1645 1.2235 0.3678
5 6 1.5395 2.3396 -0.4724
6 7 2.1673 3.4940 -0.3976
7 14 -0.1728 2.2540 -1.2143
8 1 -0.8108 3.5930 -1.1427
9 1 -0.0766 1.8267 -2.6333
10 1 -0.9920 1.2741 -0.4567
11 6 2.1975 -1.2687 -0.0006
12 6 3.5398 -1.0586 0.6912
13 6 3.2984 -0.5272 2.1243
14 1 4.1741 -0.0838 2.5983
15 6 2.0839 0.4280 2.0042
16 6 0.7643 -0.3355 1.9960
17 6 0.9860 -1.8650 2.1093
18 1 0.1566 -2.4073 2.5635
19 6 1.3398 -2.3314 0.6773
20 16 2.5724 -1.9497 3.0459
21 1 -0.3633 0.1034 -1.0224
22 1 -0.3633 -0.9372 0.4217
23 1 -0.3633 0.8337 0.6009
24 1 1.7410 4.3003 -0.7281
25 1 2.3777 -1.5690 -1.0329
26 1 4.0764 -2.0061 0.7400
27 1 4.1297 -0.3349 0.1286
28 1 2.0899 1.1185 2.8475
29 1 2.1713 0.9969 1.0787
30 1 0.2352 -0.1209 1.0676
31 1 0.1556 -0.0026 2.8368
32 1 0.4237 -2.4789 0.1055
33 1 1.8933 -3.2691 0.7262
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000403779914.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:44:33
Heat of formation + Delta-G solvation = 372.543177 kcal
Electronic energy + Delta-G solvation = -15823.063675 eV
Core-core repulsion = 13604.568929 eV
Total energy + Delta-G solvation = -2218.494746 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 227.104 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-42.26211 -34.18416 -33.37778 -31.18280 -30.92617 -27.63290 -24.44765 -23.34758
-22.48748 -19.52404 -18.83517 -17.30031 -16.37990 -16.27560 -15.09696 -14.47121
-13.81378 -13.28322 -12.96210 -12.50688 -12.43627 -12.22798 -11.95891 -11.56725
-11.16539 -11.08257 -10.83490 -10.60309 -10.33135 -9.82406 -9.62323 -9.35489
-9.30397 -8.24173 -7.90621 -7.56672 -6.92338 -6.36302 -6.09748 -3.50458
2.78006 3.04864 3.15194 3.27744 3.37495 4.25163 4.58497 4.86618
5.28848 5.37152 5.42768 5.51970 5.70073 5.76741 5.79412 6.06771
6.11399 6.17727 6.20342 6.38941 6.53342 6.64532 6.73364 6.78788
6.89116 7.18486 7.31155 7.50746 7.66600 7.73199 8.44145 9.19096
9.27930 9.64010 10.74787
Molecular weight = 227.10amu
Principal moments of inertia in cm(-1)
A = 0.041677 B = 0.013493 C = 0.012240
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 671.669150 B = 2074.695856 C = 2287.088931
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.112 3.888
2 N -0.635 5.635
3 C -0.233 4.233
4 H 0.128 0.872
5 C 0.022 3.978
6 N -0.882 5.882
7 Si 0.817 3.183
8 H -0.302 1.302
9 H -0.282 1.282
10 H -0.183 1.183
11 C 0.184 3.816
12 C -0.113 4.113
13 C 0.005 3.995
14 H 0.095 0.905
15 C -0.292 4.292
16 C -0.215 4.215
17 C -0.017 4.017
18 H 0.098 0.902
19 C -0.125 4.125
20 S -0.406 6.406
21 H 0.008 0.992
22 H 0.063 0.937
23 H 0.078 0.922
24 H 0.274 0.726
25 H 0.034 0.966
26 H 0.059 0.941
27 H 0.079 0.921
28 H 0.002 0.998
29 H 0.285 0.715
30 H 0.200 0.800
31 H 0.005 0.995
32 H 0.067 0.933
33 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.105 -7.402 -0.538 8.045
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.026 4.026
2 N -0.366 5.366
3 C -0.355 4.355
4 H 0.144 0.856
5 C -0.183 4.183
6 N -0.521 5.521
7 Si 0.646 3.354
8 H -0.230 1.230
9 H -0.209 1.209
10 H -0.107 1.107
11 C 0.078 3.922
12 C -0.153 4.153
13 C -0.121 4.121
14 H 0.114 0.886
15 C -0.326 4.326
16 C -0.251 4.251
17 C -0.146 4.146
18 H 0.116 0.884
19 C -0.165 4.165
20 S -0.178 6.178
21 H 0.025 0.975
22 H 0.081 0.919
23 H 0.095 0.905
24 H 0.084 0.916
25 H 0.051 0.949
26 H 0.078 0.922
27 H 0.097 0.903
28 H 0.021 0.979
29 H 0.294 0.706
30 H 0.213 0.787
31 H 0.024 0.976
32 H 0.085 0.915
33 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -2.670 -7.978 0.396 8.422
hybrid contribution -0.935 0.546 -0.436 1.167
sum -3.604 -7.432 -0.041 8.260
Atomic orbital electron populations
1.20690 0.85502 1.01308 0.95131 1.45730 0.99935 1.02640 1.88329
1.16311 1.01775 0.84978 1.32480 0.85631 1.25412 0.99998 0.95617
0.97243 1.69711 1.38496 0.98704 1.45159 0.89034 0.86254 0.78260
0.81833 1.22993 1.20860 1.10657 1.20086 0.90959 0.85070 0.96047
1.22192 0.97402 1.00380 0.95300 1.24527 1.01569 0.92256 0.93794
0.88641 1.27788 0.88325 0.99825 1.16631 1.26315 1.02668 0.89677
1.06405 1.24437 0.93650 1.01565 0.94898 0.88378 1.22305 1.00140
0.99024 0.94984 1.87544 1.22040 1.49964 1.58241 0.97543 0.91930
0.90483 0.91598 0.94867 0.92206 0.90257 0.97939 0.70555 0.78660
0.97638 0.91493 0.91134
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.11 2.07 4.99 59.85 0.30 2.36 16
2 N -0.64 -12.99 1.57 -399.03 -0.63 -13.61 16
3 C -0.23 -5.48 6.07 -15.06 -0.09 -5.57 16
4 H 0.13 3.16 5.17 -52.49 -0.27 2.89 16
5 C 0.02 0.54 5.48 -17.43 -0.10 0.45 16
6 N -0.88 -23.82 13.97 55.49 0.78 -23.05 16
7 Si 0.82 17.51 24.65 -169.99 -4.19 13.32 16
8 H -0.30 -6.88 7.11 56.52 0.40 -6.48 16
9 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16
10 H -0.18 -3.30 3.37 28.42 0.10 -3.21 16
11 C 0.18 3.41 3.25 -68.49 -0.22 3.19 16
12 C -0.11 -2.12 4.79 -26.09 -0.13 -2.25 16
13 C 0.01 0.11 4.62 -24.77 -0.11 0.00 16
14 H 0.10 1.95 8.14 -51.93 -0.42 1.52 16
15 C -0.29 -6.58 4.74 -25.97 -0.12 -6.71 16
16 C -0.22 -4.41 4.22 -25.97 -0.11 -4.52 16
17 C -0.02 -0.32 4.53 -24.80 -0.11 -0.43 16
18 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16
19 C -0.12 -2.08 4.79 -26.12 -0.13 -2.20 16
20 S -0.41 -8.31 21.98 -107.50 -2.36 -10.68 16
21 H 0.01 0.14 4.93 -51.93 -0.26 -0.12 16
22 H 0.06 1.02 4.31 -51.93 -0.22 0.80 16
23 H 0.08 1.50 4.39 -51.93 -0.23 1.27 16
24 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16
25 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16
26 H 0.06 1.04 8.03 -51.93 -0.42 0.63 16
27 H 0.08 1.52 6.79 -51.93 -0.35 1.16 16
28 H 0.00 0.05 8.14 -51.93 -0.42 -0.38 16
29 H 0.28 6.62 0.32 -195.14 -0.06 6.56 16
30 H 0.20 3.81 0.09 -194.15 -0.02 3.79 16
31 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16
32 H 0.07 0.98 6.73 -51.93 -0.35 0.64 16
33 H 0.07 1.12 8.03 -51.93 -0.42 0.70 16
LS Contribution 225.05 15.07 3.39 3.39
Total: -1.00 -26.58 225.05 -7.98 -34.56
By element:
Atomic # 1 Polarization: 15.90 SS G_CDS: -4.15 Total: 11.75 kcal
Atomic # 6 Polarization: -14.86 SS G_CDS: -0.82 Total: -15.68 kcal
Atomic # 7 Polarization: -36.81 SS G_CDS: 0.15 Total: -36.66 kcal
Atomic # 14 Polarization: 17.51 SS G_CDS: -4.19 Total: 13.32 kcal
Atomic # 16 Polarization: -8.31 SS G_CDS: -2.36 Total: -10.68 kcal
Total LS contribution 3.39 Total: 3.39 kcal
Total: -26.58 -7.98 -34.56 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000403779914.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 407.103 kcal
(2) G-P(sol) polarization free energy of solvation -26.577 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 380.526 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.560 kcal
(6) G-S(sol) free energy of system = (1) + (5) 372.543 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds