Wall clock time and date at job start Mon Mar 30 2020 02:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36934 * 120.00092 * 2 1 4 4 H 1.07998 * 119.99708 * 156.84661 * 3 2 1 5 5 C 1.38806 * 120.00196 * 336.85949 * 3 2 1 6 6 N 1.31618 * 120.00291 * 175.87721 * 5 3 2 7 7 Si 1.86808 * 120.00051 * 355.87727 * 5 3 2 8 8 H 1.48493 * 109.47157 * 157.67896 * 7 5 3 9 9 H 1.48500 * 109.47004 * 277.68123 * 7 5 3 10 10 H 1.48504 * 109.46846 * 37.67984 * 7 5 3 11 11 C 1.46498 * 119.99831 * 180.02562 * 2 1 3 12 12 C 1.52458 * 108.70219 * 208.61717 * 11 2 1 13 13 C 1.54741 * 109.28049 * 57.40336 * 12 11 2 14 14 H 1.09000 * 114.65111 * 196.40194 * 13 12 11 15 15 C 1.54971 * 105.19969 * 322.92172 * 13 12 11 16 16 C 1.52458 * 111.72108 * 81.08336 * 15 13 12 17 17 C 1.54967 * 111.71928 * 359.97438 * 16 15 13 18 18 H 1.08998 * 114.36930 * 152.81341 * 17 16 15 19 19 C 1.52459 * 108.79446 * 331.96414 * 11 2 1 20 20 S 1.84393 * 105.03271 * 69.99818 * 13 12 11 21 21 H 1.08993 * 109.47179 * 84.22383 * 1 2 3 22 22 H 1.08998 * 109.46886 * 204.22404 * 1 2 3 23 23 H 1.09003 * 109.47000 * 324.21930 * 1 2 3 24 24 H 0.97001 * 120.00195 * 179.97438 * 6 5 3 25 25 H 1.09007 * 108.75869 * 90.31575 * 11 2 1 26 26 H 1.09004 * 109.50909 * 177.34829 * 12 11 2 27 27 H 1.09003 * 109.50019 * 297.42337 * 12 11 2 28 28 H 1.08999 * 109.04069 * 201.67725 * 15 13 12 29 29 H 1.08993 * 108.94663 * 320.55378 * 15 13 12 30 30 H 1.08997 * 109.03763 * 239.40165 * 16 15 13 31 31 H 1.09005 * 109.03856 * 120.47159 * 16 15 13 32 32 H 1.09000 * 109.50614 * 62.62005 * 19 11 2 33 33 H 1.08998 * 109.50709 * 182.70370 * 19 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1645 1.2235 0.3678 5 6 1.5395 2.3396 -0.4724 6 7 2.1673 3.4940 -0.3976 7 14 -0.1728 2.2540 -1.2143 8 1 -0.8108 3.5930 -1.1427 9 1 -0.0766 1.8267 -2.6333 10 1 -0.9920 1.2741 -0.4567 11 6 2.1975 -1.2687 -0.0006 12 6 3.5398 -1.0586 0.6912 13 6 3.2984 -0.5272 2.1243 14 1 4.1741 -0.0838 2.5983 15 6 2.0839 0.4280 2.0042 16 6 0.7643 -0.3355 1.9960 17 6 0.9860 -1.8650 2.1093 18 1 0.1566 -2.4073 2.5635 19 6 1.3398 -2.3314 0.6773 20 16 2.5724 -1.9497 3.0459 21 1 -0.3633 0.1034 -1.0224 22 1 -0.3633 -0.9372 0.4217 23 1 -0.3633 0.8337 0.6009 24 1 1.7410 4.3003 -0.7281 25 1 2.3777 -1.5690 -1.0329 26 1 4.0764 -2.0061 0.7400 27 1 4.1297 -0.3349 0.1286 28 1 2.0899 1.1185 2.8475 29 1 2.1713 0.9969 1.0787 30 1 0.2352 -0.1209 1.0676 31 1 0.1556 -0.0026 2.8368 32 1 0.4237 -2.4789 0.1055 33 1 1.8933 -3.2691 0.7262 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403779914.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:33 Heat of formation + Delta-G solvation = 372.543177 kcal Electronic energy + Delta-G solvation = -15823.063675 eV Core-core repulsion = 13604.568929 eV Total energy + Delta-G solvation = -2218.494746 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.26211 -34.18416 -33.37778 -31.18280 -30.92617 -27.63290 -24.44765 -23.34758 -22.48748 -19.52404 -18.83517 -17.30031 -16.37990 -16.27560 -15.09696 -14.47121 -13.81378 -13.28322 -12.96210 -12.50688 -12.43627 -12.22798 -11.95891 -11.56725 -11.16539 -11.08257 -10.83490 -10.60309 -10.33135 -9.82406 -9.62323 -9.35489 -9.30397 -8.24173 -7.90621 -7.56672 -6.92338 -6.36302 -6.09748 -3.50458 2.78006 3.04864 3.15194 3.27744 3.37495 4.25163 4.58497 4.86618 5.28848 5.37152 5.42768 5.51970 5.70073 5.76741 5.79412 6.06771 6.11399 6.17727 6.20342 6.38941 6.53342 6.64532 6.73364 6.78788 6.89116 7.18486 7.31155 7.50746 7.66600 7.73199 8.44145 9.19096 9.27930 9.64010 10.74787 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.041677 B = 0.013493 C = 0.012240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.669150 B = 2074.695856 C = 2287.088931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.635 5.635 3 C -0.233 4.233 4 H 0.128 0.872 5 C 0.022 3.978 6 N -0.882 5.882 7 Si 0.817 3.183 8 H -0.302 1.302 9 H -0.282 1.282 10 H -0.183 1.183 11 C 0.184 3.816 12 C -0.113 4.113 13 C 0.005 3.995 14 H 0.095 0.905 15 C -0.292 4.292 16 C -0.215 4.215 17 C -0.017 4.017 18 H 0.098 0.902 19 C -0.125 4.125 20 S -0.406 6.406 21 H 0.008 0.992 22 H 0.063 0.937 23 H 0.078 0.922 24 H 0.274 0.726 25 H 0.034 0.966 26 H 0.059 0.941 27 H 0.079 0.921 28 H 0.002 0.998 29 H 0.285 0.715 30 H 0.200 0.800 31 H 0.005 0.995 32 H 0.067 0.933 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.105 -7.402 -0.538 8.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.366 5.366 3 C -0.355 4.355 4 H 0.144 0.856 5 C -0.183 4.183 6 N -0.521 5.521 7 Si 0.646 3.354 8 H -0.230 1.230 9 H -0.209 1.209 10 H -0.107 1.107 11 C 0.078 3.922 12 C -0.153 4.153 13 C -0.121 4.121 14 H 0.114 0.886 15 C -0.326 4.326 16 C -0.251 4.251 17 C -0.146 4.146 18 H 0.116 0.884 19 C -0.165 4.165 20 S -0.178 6.178 21 H 0.025 0.975 22 H 0.081 0.919 23 H 0.095 0.905 24 H 0.084 0.916 25 H 0.051 0.949 26 H 0.078 0.922 27 H 0.097 0.903 28 H 0.021 0.979 29 H 0.294 0.706 30 H 0.213 0.787 31 H 0.024 0.976 32 H 0.085 0.915 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.670 -7.978 0.396 8.422 hybrid contribution -0.935 0.546 -0.436 1.167 sum -3.604 -7.432 -0.041 8.260 Atomic orbital electron populations 1.20690 0.85502 1.01308 0.95131 1.45730 0.99935 1.02640 1.88329 1.16311 1.01775 0.84978 1.32480 0.85631 1.25412 0.99998 0.95617 0.97243 1.69711 1.38496 0.98704 1.45159 0.89034 0.86254 0.78260 0.81833 1.22993 1.20860 1.10657 1.20086 0.90959 0.85070 0.96047 1.22192 0.97402 1.00380 0.95300 1.24527 1.01569 0.92256 0.93794 0.88641 1.27788 0.88325 0.99825 1.16631 1.26315 1.02668 0.89677 1.06405 1.24437 0.93650 1.01565 0.94898 0.88378 1.22305 1.00140 0.99024 0.94984 1.87544 1.22040 1.49964 1.58241 0.97543 0.91930 0.90483 0.91598 0.94867 0.92206 0.90257 0.97939 0.70555 0.78660 0.97638 0.91493 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.07 4.99 59.85 0.30 2.36 16 2 N -0.64 -12.99 1.57 -399.03 -0.63 -13.61 16 3 C -0.23 -5.48 6.07 -15.06 -0.09 -5.57 16 4 H 0.13 3.16 5.17 -52.49 -0.27 2.89 16 5 C 0.02 0.54 5.48 -17.43 -0.10 0.45 16 6 N -0.88 -23.82 13.97 55.49 0.78 -23.05 16 7 Si 0.82 17.51 24.65 -169.99 -4.19 13.32 16 8 H -0.30 -6.88 7.11 56.52 0.40 -6.48 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 10 H -0.18 -3.30 3.37 28.42 0.10 -3.21 16 11 C 0.18 3.41 3.25 -68.49 -0.22 3.19 16 12 C -0.11 -2.12 4.79 -26.09 -0.13 -2.25 16 13 C 0.01 0.11 4.62 -24.77 -0.11 0.00 16 14 H 0.10 1.95 8.14 -51.93 -0.42 1.52 16 15 C -0.29 -6.58 4.74 -25.97 -0.12 -6.71 16 16 C -0.22 -4.41 4.22 -25.97 -0.11 -4.52 16 17 C -0.02 -0.32 4.53 -24.80 -0.11 -0.43 16 18 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 19 C -0.12 -2.08 4.79 -26.12 -0.13 -2.20 16 20 S -0.41 -8.31 21.98 -107.50 -2.36 -10.68 16 21 H 0.01 0.14 4.93 -51.93 -0.26 -0.12 16 22 H 0.06 1.02 4.31 -51.93 -0.22 0.80 16 23 H 0.08 1.50 4.39 -51.93 -0.23 1.27 16 24 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.06 1.04 8.03 -51.93 -0.42 0.63 16 27 H 0.08 1.52 6.79 -51.93 -0.35 1.16 16 28 H 0.00 0.05 8.14 -51.93 -0.42 -0.38 16 29 H 0.28 6.62 0.32 -195.14 -0.06 6.56 16 30 H 0.20 3.81 0.09 -194.15 -0.02 3.79 16 31 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 32 H 0.07 0.98 6.73 -51.93 -0.35 0.64 16 33 H 0.07 1.12 8.03 -51.93 -0.42 0.70 16 LS Contribution 225.05 15.07 3.39 3.39 Total: -1.00 -26.58 225.05 -7.98 -34.56 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -4.15 Total: 11.75 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: -0.82 Total: -15.68 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.15 Total: -36.66 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -4.19 Total: 13.32 kcal Atomic # 16 Polarization: -8.31 SS G_CDS: -2.36 Total: -10.68 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -26.58 -7.98 -34.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403779914.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 407.103 kcal (2) G-P(sol) polarization free energy of solvation -26.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 380.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 372.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds