Wall clock time and date at job start Mon Mar 30 2020 02:44:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46505 * 1
3 3 C 1.36934 * 120.00092 * 2 1
4 4 H 1.07998 * 119.99708 * 156.84661 * 3 2 1
5 5 C 1.38806 * 120.00196 * 336.85949 * 3 2 1
6 6 N 1.31618 * 120.00291 * 175.87721 * 5 3 2
7 7 Si 1.86808 * 120.00051 * 355.87727 * 5 3 2
8 8 H 1.48493 * 109.47157 * 157.67896 * 7 5 3
9 9 H 1.48500 * 109.47004 * 277.68123 * 7 5 3
10 10 H 1.48504 * 109.46846 * 37.67984 * 7 5 3
11 11 C 1.46498 * 119.99831 * 180.02562 * 2 1 3
12 12 C 1.52458 * 108.70219 * 208.61717 * 11 2 1
13 13 C 1.54741 * 109.28049 * 57.40336 * 12 11 2
14 14 H 1.09000 * 114.65111 * 196.40194 * 13 12 11
15 15 C 1.54971 * 105.19969 * 322.92172 * 13 12 11
16 16 C 1.52458 * 111.72108 * 81.08336 * 15 13 12
17 17 C 1.54967 * 111.71928 * 359.97438 * 16 15 13
18 18 H 1.08998 * 114.36930 * 152.81341 * 17 16 15
19 19 C 1.52459 * 108.79446 * 331.96414 * 11 2 1
20 20 S 1.84393 * 105.03271 * 69.99818 * 13 12 11
21 21 H 1.08993 * 109.47179 * 84.22383 * 1 2 3
22 22 H 1.08998 * 109.46886 * 204.22404 * 1 2 3
23 23 H 1.09003 * 109.47000 * 324.21930 * 1 2 3
24 24 H 0.97001 * 120.00195 * 179.97438 * 6 5 3
25 25 H 1.09007 * 108.75869 * 90.31575 * 11 2 1
26 26 H 1.09004 * 109.50909 * 177.34829 * 12 11 2
27 27 H 1.09003 * 109.50019 * 297.42337 * 12 11 2
28 28 H 1.08999 * 109.04069 * 201.67725 * 15 13 12
29 29 H 1.08993 * 108.94663 * 320.55378 * 15 13 12
30 30 H 1.08997 * 109.03763 * 239.40165 * 16 15 13
31 31 H 1.09005 * 109.03856 * 120.47159 * 16 15 13
32 32 H 1.09000 * 109.50614 * 62.62005 * 19 11 2
33 33 H 1.08998 * 109.50709 * 182.70370 * 19 11 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 3.1645 1.2235 0.3678
5 6 1.5395 2.3396 -0.4724
6 7 2.1673 3.4940 -0.3976
7 14 -0.1728 2.2540 -1.2143
8 1 -0.8108 3.5930 -1.1427
9 1 -0.0766 1.8267 -2.6333
10 1 -0.9920 1.2741 -0.4567
11 6 2.1975 -1.2687 -0.0006
12 6 3.5398 -1.0586 0.6912
13 6 3.2984 -0.5272 2.1243
14 1 4.1741 -0.0838 2.5983
15 6 2.0839 0.4280 2.0042
16 6 0.7643 -0.3355 1.9960
17 6 0.9860 -1.8650 2.1093
18 1 0.1566 -2.4073 2.5635
19 6 1.3398 -2.3314 0.6773
20 16 2.5724 -1.9497 3.0459
21 1 -0.3633 0.1034 -1.0224
22 1 -0.3633 -0.9372 0.4217
23 1 -0.3633 0.8337 0.6009
24 1 1.7410 4.3003 -0.7281
25 1 2.3777 -1.5690 -1.0329
26 1 4.0764 -2.0061 0.7400
27 1 4.1297 -0.3349 0.1286
28 1 2.0899 1.1185 2.8475
29 1 2.1713 0.9969 1.0787
30 1 0.2352 -0.1209 1.0676
31 1 0.1556 -0.0026 2.8368
32 1 0.4237 -2.4789 0.1055
33 1 1.8933 -3.2691 0.7262
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000403779914.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:44:33
Heat of formation + Delta-G solvation = 356.047558 kcal
Electronic energy + Delta-G solvation = -15823.778978 eV
Core-core repulsion = 13604.568929 eV
Total energy + Delta-G solvation = -2219.210050 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 227.104 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-43.89008 -35.81843 -35.01022 -32.88386 -32.54556 -29.27402 -26.12322 -24.88636
-24.11641 -21.25751 -20.39417 -18.94242 -18.02320 -17.90631 -16.74148 -16.02144
-15.42560 -14.93489 -14.60795 -14.09570 -13.95993 -13.78165 -13.60634 -13.24093
-12.71926 -12.69774 -12.51805 -12.17636 -12.08125 -11.48721 -11.15256 -11.04102
-10.97620 -9.80634 -9.72849 -9.17541 -8.54046 -8.23294 -7.80837 -5.37521
1.21314 1.38066 1.51487 1.57080 1.64927 2.51103 2.94129 3.08098
3.82190 3.90569 3.96721 4.02605 4.19092 4.24290 4.27123 4.55406
4.65613 4.70582 4.72266 4.92283 5.07807 5.16683 5.19310 5.25841
5.31671 5.46702 5.50863 5.65576 5.85262 6.08493 6.71077 7.38471
7.45082 7.79248 8.89895
Molecular weight = 227.10amu
Principal moments of inertia in cm(-1)
A = 0.041677 B = 0.013493 C = 0.012240
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 671.669150 B = 2074.695856 C = 2287.088931
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.087 3.913
2 N -0.642 5.642
3 C -0.206 4.206
4 H 0.096 0.904
5 C -0.039 4.039
6 N -0.940 5.940
7 Si 0.834 3.166
8 H -0.330 1.330
9 H -0.292 1.292
10 H -0.095 1.095
11 C 0.176 3.824
12 C -0.107 4.107
13 C -0.002 4.002
14 H 0.084 0.916
15 C -0.288 4.288
16 C -0.223 4.223
17 C -0.009 4.009
18 H 0.127 0.873
19 C -0.117 4.117
20 S -0.423 6.423
21 H 0.030 0.970
22 H 0.108 0.892
23 H 0.074 0.926
24 H 0.266 0.734
25 H 0.051 0.949
26 H 0.078 0.922
27 H 0.066 0.934
28 H -0.041 1.041
29 H 0.274 0.726
30 H 0.221 0.779
31 H -0.007 1.007
32 H 0.104 0.896
33 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.350 -10.859 -1.051 12.151
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.050 4.050
2 N -0.373 5.373
3 C -0.330 4.330
4 H 0.112 0.888
5 C -0.237 4.237
6 N -0.583 5.583
7 Si 0.664 3.336
8 H -0.260 1.260
9 H -0.219 1.219
10 H -0.018 1.018
11 C 0.072 3.928
12 C -0.147 4.147
13 C -0.129 4.129
14 H 0.102 0.898
15 C -0.322 4.322
16 C -0.258 4.258
17 C -0.137 4.137
18 H 0.145 0.855
19 C -0.157 4.157
20 S -0.196 6.196
21 H 0.047 0.953
22 H 0.125 0.875
23 H 0.091 0.909
24 H 0.075 0.925
25 H 0.068 0.932
26 H 0.096 0.904
27 H 0.084 0.916
28 H -0.022 1.022
29 H 0.284 0.716
30 H 0.234 0.766
31 H 0.011 0.989
32 H 0.122 0.878
33 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges -4.919 -11.490 -0.113 12.500
hybrid contribution -0.091 1.563 -0.168 1.574
sum -5.010 -9.928 -0.281 11.124
Atomic orbital electron populations
1.20893 0.84223 1.03194 0.96688 1.45759 1.00986 1.02208 1.88343
1.16165 1.00613 0.86244 1.29928 0.88822 1.26078 1.03869 0.95226
0.98562 1.69858 1.40486 0.99472 1.48463 0.88968 0.84130 0.79110
0.81425 1.25978 1.21918 1.01841 1.20322 0.90679 0.84698 0.97147
1.22151 0.98373 1.00701 0.93490 1.24451 1.00498 0.92500 0.95479
0.89759 1.27712 0.90995 1.00134 1.13396 1.26452 1.00923 0.91202
1.07212 1.24664 0.92960 1.00080 0.95957 0.85536 1.22300 1.01500
0.98447 0.93409 1.87615 1.24011 1.48655 1.59312 0.95270 0.87481
0.90914 0.92476 0.93151 0.90376 0.91593 1.02249 0.71586 0.76577
0.98886 0.87783 0.89486
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 2.73 4.99 127.77 0.64 3.37 16
2 N -0.64 -24.31 1.57 ******* -2.22 -26.53 16
3 C -0.21 -9.72 6.07 84.03 0.51 -9.21 16
4 H 0.10 4.95 5.17 -2.91 -0.02 4.94 16
5 C -0.04 -1.99 5.48 84.86 0.47 -1.53 16
6 N -0.94 -53.69 13.97 21.65 0.30 -53.38 16
7 Si 0.83 34.21 24.65 68.60 1.69 35.91 16
8 H -0.33 -15.06 7.11 99.48 0.71 -14.35 16
9 H -0.29 -12.42 7.11 99.48 0.71 -11.72 16
10 H -0.10 -2.89 3.37 73.08 0.25 -2.65 16
11 C 0.18 5.82 3.25 44.63 0.15 5.97 16
12 C -0.11 -3.86 4.79 31.01 0.15 -3.71 16
13 C 0.00 -0.08 4.62 31.86 0.15 0.06 16
14 H 0.08 3.57 8.14 -2.39 -0.02 3.55 16
15 C -0.29 -13.03 4.74 31.09 0.15 -12.88 16
16 C -0.22 -8.43 4.22 31.09 0.13 -8.30 16
17 C -0.01 -0.28 4.53 31.85 0.14 -0.14 16
18 H 0.13 3.45 8.14 -2.39 -0.02 3.43 16
19 C -0.12 -3.17 4.79 30.99 0.15 -3.02 16
20 S -0.42 -16.32 21.98 -56.49 -1.24 -17.56 16
21 H 0.03 0.88 4.93 -2.39 -0.01 0.87 16
22 H 0.11 2.65 4.31 -2.39 -0.01 2.63 16
23 H 0.07 2.47 4.39 -2.39 -0.01 2.46 16
24 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16
25 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16
26 H 0.08 2.52 8.03 -2.39 -0.02 2.50 16
27 H 0.07 2.53 6.79 -2.39 -0.02 2.51 16
28 H -0.04 -2.18 8.14 -2.39 -0.02 -2.20 16
29 H 0.27 12.89 0.32 -173.20 -0.06 12.84 16
30 H 0.22 7.42 0.09 -171.52 -0.01 7.40 16
31 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16
32 H 0.10 2.16 6.73 -2.39 -0.02 2.15 16
33 H 0.09 2.19 8.03 -2.39 -0.02 2.17 16
Total: -1.00 -60.96 225.05 1.76 -59.20
By element:
Atomic # 1 Polarization: 31.16 SS G_CDS: 0.60 Total: 31.76 kcal
Atomic # 6 Polarization: -32.02 SS G_CDS: 2.62 Total: -29.39 kcal
Atomic # 7 Polarization: -78.00 SS G_CDS: -1.92 Total: -79.92 kcal
Atomic # 14 Polarization: 34.21 SS G_CDS: 1.69 Total: 35.91 kcal
Atomic # 16 Polarization: -16.32 SS G_CDS: -1.24 Total: -17.56 kcal
Total: -60.96 1.76 -59.20 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000403779914.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 415.251 kcal
(2) G-P(sol) polarization free energy of solvation -60.962 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 354.288 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.759 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.203 kcal
(6) G-S(sol) free energy of system = (1) + (5) 356.048 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds