Wall clock time and date at job start Mon Mar 30 2020 02:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36934 * 120.00092 * 2 1 4 4 H 1.07998 * 119.99708 * 156.84661 * 3 2 1 5 5 C 1.38806 * 120.00196 * 336.85949 * 3 2 1 6 6 N 1.31618 * 120.00291 * 175.87721 * 5 3 2 7 7 Si 1.86808 * 120.00051 * 355.87727 * 5 3 2 8 8 H 1.48493 * 109.47157 * 157.67896 * 7 5 3 9 9 H 1.48500 * 109.47004 * 277.68123 * 7 5 3 10 10 H 1.48504 * 109.46846 * 37.67984 * 7 5 3 11 11 C 1.46498 * 119.99831 * 180.02562 * 2 1 3 12 12 C 1.52458 * 108.70219 * 208.61717 * 11 2 1 13 13 C 1.54741 * 109.28049 * 57.40336 * 12 11 2 14 14 H 1.09000 * 114.65111 * 196.40194 * 13 12 11 15 15 C 1.54971 * 105.19969 * 322.92172 * 13 12 11 16 16 C 1.52458 * 111.72108 * 81.08336 * 15 13 12 17 17 C 1.54967 * 111.71928 * 359.97438 * 16 15 13 18 18 H 1.08998 * 114.36930 * 152.81341 * 17 16 15 19 19 C 1.52459 * 108.79446 * 331.96414 * 11 2 1 20 20 S 1.84393 * 105.03271 * 69.99818 * 13 12 11 21 21 H 1.08993 * 109.47179 * 84.22383 * 1 2 3 22 22 H 1.08998 * 109.46886 * 204.22404 * 1 2 3 23 23 H 1.09003 * 109.47000 * 324.21930 * 1 2 3 24 24 H 0.97001 * 120.00195 * 179.97438 * 6 5 3 25 25 H 1.09007 * 108.75869 * 90.31575 * 11 2 1 26 26 H 1.09004 * 109.50909 * 177.34829 * 12 11 2 27 27 H 1.09003 * 109.50019 * 297.42337 * 12 11 2 28 28 H 1.08999 * 109.04069 * 201.67725 * 15 13 12 29 29 H 1.08993 * 108.94663 * 320.55378 * 15 13 12 30 30 H 1.08997 * 109.03763 * 239.40165 * 16 15 13 31 31 H 1.09005 * 109.03856 * 120.47159 * 16 15 13 32 32 H 1.09000 * 109.50614 * 62.62005 * 19 11 2 33 33 H 1.08998 * 109.50709 * 182.70370 * 19 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1645 1.2235 0.3678 5 6 1.5395 2.3396 -0.4724 6 7 2.1673 3.4940 -0.3976 7 14 -0.1728 2.2540 -1.2143 8 1 -0.8108 3.5930 -1.1427 9 1 -0.0766 1.8267 -2.6333 10 1 -0.9920 1.2741 -0.4567 11 6 2.1975 -1.2687 -0.0006 12 6 3.5398 -1.0586 0.6912 13 6 3.2984 -0.5272 2.1243 14 1 4.1741 -0.0838 2.5983 15 6 2.0839 0.4280 2.0042 16 6 0.7643 -0.3355 1.9960 17 6 0.9860 -1.8650 2.1093 18 1 0.1566 -2.4073 2.5635 19 6 1.3398 -2.3314 0.6773 20 16 2.5724 -1.9497 3.0459 21 1 -0.3633 0.1034 -1.0224 22 1 -0.3633 -0.9372 0.4217 23 1 -0.3633 0.8337 0.6009 24 1 1.7410 4.3003 -0.7281 25 1 2.3777 -1.5690 -1.0329 26 1 4.0764 -2.0061 0.7400 27 1 4.1297 -0.3349 0.1286 28 1 2.0899 1.1185 2.8475 29 1 2.1713 0.9969 1.0787 30 1 0.2352 -0.1209 1.0676 31 1 0.1556 -0.0026 2.8368 32 1 0.4237 -2.4789 0.1055 33 1 1.8933 -3.2691 0.7262 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403779914.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:33 Heat of formation + Delta-G solvation = 356.047558 kcal Electronic energy + Delta-G solvation = -15823.778978 eV Core-core repulsion = 13604.568929 eV Total energy + Delta-G solvation = -2219.210050 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.89008 -35.81843 -35.01022 -32.88386 -32.54556 -29.27402 -26.12322 -24.88636 -24.11641 -21.25751 -20.39417 -18.94242 -18.02320 -17.90631 -16.74148 -16.02144 -15.42560 -14.93489 -14.60795 -14.09570 -13.95993 -13.78165 -13.60634 -13.24093 -12.71926 -12.69774 -12.51805 -12.17636 -12.08125 -11.48721 -11.15256 -11.04102 -10.97620 -9.80634 -9.72849 -9.17541 -8.54046 -8.23294 -7.80837 -5.37521 1.21314 1.38066 1.51487 1.57080 1.64927 2.51103 2.94129 3.08098 3.82190 3.90569 3.96721 4.02605 4.19092 4.24290 4.27123 4.55406 4.65613 4.70582 4.72266 4.92283 5.07807 5.16683 5.19310 5.25841 5.31671 5.46702 5.50863 5.65576 5.85262 6.08493 6.71077 7.38471 7.45082 7.79248 8.89895 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.041677 B = 0.013493 C = 0.012240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.669150 B = 2074.695856 C = 2287.088931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.642 5.642 3 C -0.206 4.206 4 H 0.096 0.904 5 C -0.039 4.039 6 N -0.940 5.940 7 Si 0.834 3.166 8 H -0.330 1.330 9 H -0.292 1.292 10 H -0.095 1.095 11 C 0.176 3.824 12 C -0.107 4.107 13 C -0.002 4.002 14 H 0.084 0.916 15 C -0.288 4.288 16 C -0.223 4.223 17 C -0.009 4.009 18 H 0.127 0.873 19 C -0.117 4.117 20 S -0.423 6.423 21 H 0.030 0.970 22 H 0.108 0.892 23 H 0.074 0.926 24 H 0.266 0.734 25 H 0.051 0.949 26 H 0.078 0.922 27 H 0.066 0.934 28 H -0.041 1.041 29 H 0.274 0.726 30 H 0.221 0.779 31 H -0.007 1.007 32 H 0.104 0.896 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.350 -10.859 -1.051 12.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.373 5.373 3 C -0.330 4.330 4 H 0.112 0.888 5 C -0.237 4.237 6 N -0.583 5.583 7 Si 0.664 3.336 8 H -0.260 1.260 9 H -0.219 1.219 10 H -0.018 1.018 11 C 0.072 3.928 12 C -0.147 4.147 13 C -0.129 4.129 14 H 0.102 0.898 15 C -0.322 4.322 16 C -0.258 4.258 17 C -0.137 4.137 18 H 0.145 0.855 19 C -0.157 4.157 20 S -0.196 6.196 21 H 0.047 0.953 22 H 0.125 0.875 23 H 0.091 0.909 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.096 0.904 27 H 0.084 0.916 28 H -0.022 1.022 29 H 0.284 0.716 30 H 0.234 0.766 31 H 0.011 0.989 32 H 0.122 0.878 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.919 -11.490 -0.113 12.500 hybrid contribution -0.091 1.563 -0.168 1.574 sum -5.010 -9.928 -0.281 11.124 Atomic orbital electron populations 1.20893 0.84223 1.03194 0.96688 1.45759 1.00986 1.02208 1.88343 1.16165 1.00613 0.86244 1.29928 0.88822 1.26078 1.03869 0.95226 0.98562 1.69858 1.40486 0.99472 1.48463 0.88968 0.84130 0.79110 0.81425 1.25978 1.21918 1.01841 1.20322 0.90679 0.84698 0.97147 1.22151 0.98373 1.00701 0.93490 1.24451 1.00498 0.92500 0.95479 0.89759 1.27712 0.90995 1.00134 1.13396 1.26452 1.00923 0.91202 1.07212 1.24664 0.92960 1.00080 0.95957 0.85536 1.22300 1.01500 0.98447 0.93409 1.87615 1.24011 1.48655 1.59312 0.95270 0.87481 0.90914 0.92476 0.93151 0.90376 0.91593 1.02249 0.71586 0.76577 0.98886 0.87783 0.89486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.73 4.99 127.77 0.64 3.37 16 2 N -0.64 -24.31 1.57 ******* -2.22 -26.53 16 3 C -0.21 -9.72 6.07 84.03 0.51 -9.21 16 4 H 0.10 4.95 5.17 -2.91 -0.02 4.94 16 5 C -0.04 -1.99 5.48 84.86 0.47 -1.53 16 6 N -0.94 -53.69 13.97 21.65 0.30 -53.38 16 7 Si 0.83 34.21 24.65 68.60 1.69 35.91 16 8 H -0.33 -15.06 7.11 99.48 0.71 -14.35 16 9 H -0.29 -12.42 7.11 99.48 0.71 -11.72 16 10 H -0.10 -2.89 3.37 73.08 0.25 -2.65 16 11 C 0.18 5.82 3.25 44.63 0.15 5.97 16 12 C -0.11 -3.86 4.79 31.01 0.15 -3.71 16 13 C 0.00 -0.08 4.62 31.86 0.15 0.06 16 14 H 0.08 3.57 8.14 -2.39 -0.02 3.55 16 15 C -0.29 -13.03 4.74 31.09 0.15 -12.88 16 16 C -0.22 -8.43 4.22 31.09 0.13 -8.30 16 17 C -0.01 -0.28 4.53 31.85 0.14 -0.14 16 18 H 0.13 3.45 8.14 -2.39 -0.02 3.43 16 19 C -0.12 -3.17 4.79 30.99 0.15 -3.02 16 20 S -0.42 -16.32 21.98 -56.49 -1.24 -17.56 16 21 H 0.03 0.88 4.93 -2.39 -0.01 0.87 16 22 H 0.11 2.65 4.31 -2.39 -0.01 2.63 16 23 H 0.07 2.47 4.39 -2.39 -0.01 2.46 16 24 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 25 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 26 H 0.08 2.52 8.03 -2.39 -0.02 2.50 16 27 H 0.07 2.53 6.79 -2.39 -0.02 2.51 16 28 H -0.04 -2.18 8.14 -2.39 -0.02 -2.20 16 29 H 0.27 12.89 0.32 -173.20 -0.06 12.84 16 30 H 0.22 7.42 0.09 -171.52 -0.01 7.40 16 31 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 32 H 0.10 2.16 6.73 -2.39 -0.02 2.15 16 33 H 0.09 2.19 8.03 -2.39 -0.02 2.17 16 Total: -1.00 -60.96 225.05 1.76 -59.20 By element: Atomic # 1 Polarization: 31.16 SS G_CDS: 0.60 Total: 31.76 kcal Atomic # 6 Polarization: -32.02 SS G_CDS: 2.62 Total: -29.39 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -1.92 Total: -79.92 kcal Atomic # 14 Polarization: 34.21 SS G_CDS: 1.69 Total: 35.91 kcal Atomic # 16 Polarization: -16.32 SS G_CDS: -1.24 Total: -17.56 kcal Total: -60.96 1.76 -59.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403779914.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 415.251 kcal (2) G-P(sol) polarization free energy of solvation -60.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 354.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 356.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds