Wall clock time and date at job start Mon Mar 30 2020 02:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00428 * 2 1 4 4 H 1.48496 * 109.47194 * 240.00251 * 3 2 1 5 5 H 1.48502 * 109.46666 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47379 * 120.00163 * 3 2 1 7 7 C 1.38816 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00200 * 196.89277 * 7 2 1 9 9 N 1.36935 * 119.99849 * 16.89690 * 7 2 1 10 10 C 1.47157 * 120.98838 * 206.20500 * 9 7 2 11 11 C 1.53293 * 108.41883 * 230.53433 * 10 9 7 12 12 O 1.42982 * 109.20947 * 307.66289 * 11 10 9 13 13 C 1.42945 * 114.18956 * 62.45828 * 12 11 10 14 14 C 1.53075 * 109.60886 * 177.56533 * 13 12 11 15 15 C 1.53195 * 109.02606 * 296.75411 * 14 13 12 16 16 C 1.53087 * 109.15157 * 303.12602 * 15 14 13 17 17 O 1.42894 * 109.45567 * 57.62289 * 16 15 14 18 18 C 1.42917 * 114.08801 * 298.82874 * 17 16 15 19 19 C 1.47174 * 120.99179 * 26.17905 * 9 7 2 20 20 H 0.96994 * 119.99397 * 359.97438 * 1 2 3 21 21 H 1.08994 * 109.67426 * 350.26698 * 10 9 7 22 22 H 1.09002 * 109.67308 * 110.76726 * 10 9 7 23 23 H 1.08996 * 109.51490 * 67.58486 * 11 10 9 24 24 H 1.08996 * 109.51354 * 187.74291 * 11 10 9 25 25 H 1.09000 * 109.53994 * 56.62330 * 14 13 12 26 26 H 1.09004 * 109.54445 * 176.88679 * 14 13 12 27 27 H 1.09005 * 109.52546 * 63.03029 * 15 14 13 28 28 H 1.09004 * 109.52513 * 183.15789 * 15 14 13 29 29 H 1.08993 * 109.47513 * 177.61780 * 16 15 14 30 30 H 1.08996 * 109.47291 * 297.62440 * 16 15 14 31 31 H 1.09007 * 109.48760 * 301.06776 * 18 17 16 32 32 H 1.09001 * 109.48908 * 181.02361 * 18 17 16 33 33 H 1.08995 * 109.68321 * 249.33168 * 19 9 7 34 34 H 1.08995 * 109.68454 * 9.85805 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0554 -1.2225 0.2712 9 7 1.3699 -2.3623 -0.3457 10 6 1.8344 -3.6636 0.1605 11 6 1.9814 -4.6210 -1.0277 12 8 0.7642 -4.6303 -1.7778 13 6 0.4205 -3.3672 -2.3522 14 6 -0.8606 -3.5098 -3.1778 15 6 -0.6009 -4.4731 -4.3403 16 6 0.5740 -3.9517 -5.1718 17 8 1.7248 -3.8146 -4.3359 18 6 1.5568 -2.8901 -3.2591 19 6 0.1962 -2.3448 -1.2336 20 1 -0.4849 0.8400 0.0004 21 1 2.7979 -3.5422 0.6553 22 1 1.1069 -4.0635 0.8668 23 1 2.7997 -4.2869 -1.6655 24 1 2.1911 -5.6260 -0.6616 25 1 -1.6580 -3.9044 -2.5481 26 1 -1.1521 -2.5354 -3.5697 27 1 -0.3595 -5.4610 -3.9478 28 1 -1.4912 -4.5374 -4.9660 29 1 0.7906 -4.6550 -5.9758 30 1 0.3160 -2.9819 -5.5970 31 1 1.3135 -1.9059 -3.6594 32 1 2.4806 -2.8304 -2.6836 33 1 -0.6965 -2.6101 -0.6673 34 1 0.0761 -1.3505 -1.6637 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586772806.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:52 Heat of formation + Delta-G solvation = -67.710257 kcal Electronic energy + Delta-G solvation = -17298.220873 eV Core-core repulsion = 14617.882435 eV Total energy + Delta-G solvation = -2680.338438 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.74428 -37.07087 -34.37844 -33.11166 -31.23239 -30.77067 -27.67521 -25.77210 -24.74231 -23.14714 -22.36938 -20.27305 -18.82858 -16.85239 -16.20257 -15.81268 -15.18795 -14.69601 -14.43309 -14.16849 -13.78883 -13.57069 -13.06420 -12.84816 -12.31826 -12.17125 -11.87372 -11.27932 -11.03953 -10.91410 -10.70843 -10.64020 -10.48848 -10.27847 -10.06983 -9.89508 -9.65539 -9.08756 -8.71637 -8.44183 -6.71921 -5.84441 -3.27728 3.34366 3.40333 3.41390 4.25259 4.42410 4.51050 5.13999 5.19947 5.26751 5.35294 5.45707 5.51020 5.67718 5.82678 5.98149 5.99171 6.02926 6.05982 6.08630 6.28799 6.35793 6.47072 6.50308 6.67574 6.74995 6.86667 7.09506 7.47744 7.57520 7.71334 8.05762 8.33204 9.11272 9.74365 10.32333 11.23272 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.032792 B = 0.009947 C = 0.009111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.672668 B = 2814.131323 C = 3072.417910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.254 4.254 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.109 3.891 11 C 0.046 3.954 12 O -0.375 6.375 13 C 0.064 3.936 14 C -0.104 4.104 15 C -0.150 4.150 16 C 0.061 3.939 17 O -0.384 6.384 18 C 0.048 3.952 19 C 0.158 3.842 20 H 0.255 0.745 21 H 0.061 0.939 22 H 0.025 0.975 23 H 0.048 0.952 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.043 0.957 31 H 0.053 0.947 32 H 0.106 0.894 33 H 0.029 0.971 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.012 -6.591 -7.344 9.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.384 4.384 8 H 0.086 0.914 9 N -0.319 5.319 10 C -0.018 4.018 11 C -0.033 4.033 12 O -0.294 6.294 13 C 0.022 3.978 14 C -0.142 4.142 15 C -0.188 4.188 16 C -0.016 4.016 17 O -0.302 6.302 18 C -0.029 4.029 19 C 0.032 3.968 20 H 0.065 0.935 21 H 0.079 0.921 22 H 0.043 0.957 23 H 0.066 0.934 24 H 0.098 0.902 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.124 0.876 33 H 0.047 0.953 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.034 -6.686 -7.368 9.950 hybrid contribution 0.244 1.291 0.255 1.338 sum 0.210 -5.395 -7.113 8.930 Atomic orbital electron populations 1.70018 1.05246 1.25729 1.53801 1.25041 0.95330 0.98423 1.00844 0.86353 0.78920 0.83213 0.78232 1.20930 1.21559 1.20806 1.19170 0.92621 0.84515 1.42058 0.91368 1.44097 1.33578 1.01286 1.52941 1.21627 0.98461 0.87611 0.94070 1.23017 0.87173 0.99396 0.93671 1.87805 1.41424 1.31177 1.68997 1.22786 0.93934 0.86541 0.94501 1.21490 0.96833 0.99660 0.96245 1.22114 0.98282 1.00826 0.97558 1.22491 0.86671 0.99732 0.92689 1.87891 1.36041 1.64502 1.41790 1.23106 1.01071 0.91240 0.87455 1.21329 0.89247 0.97443 0.88811 0.93468 0.92071 0.95744 0.93375 0.90245 0.91021 0.90787 0.90635 0.91680 0.89728 0.93832 0.92874 0.87630 0.95290 0.88830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.84 11.14 55.49 0.62 -25.22 16 2 C 0.00 0.06 4.95 -17.43 -0.09 -0.02 16 3 Si 0.90 21.39 29.59 -169.99 -5.03 16.36 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.25 -6.88 9.65 -15.06 -0.15 -7.03 16 8 H 0.07 1.80 7.88 -52.48 -0.41 1.39 16 9 N -0.60 -14.95 2.62 -171.87 -0.45 -15.40 16 10 C 0.11 2.34 6.73 -3.53 -0.02 2.31 16 11 C 0.05 0.87 6.61 37.31 0.25 1.12 16 12 O -0.37 -7.71 9.67 -42.35 -0.41 -8.12 16 13 C 0.06 1.28 0.71 -90.47 -0.06 1.22 16 14 C -0.10 -1.78 5.04 -26.59 -0.13 -1.91 16 15 C -0.15 -2.19 5.98 -26.59 -0.16 -2.34 16 16 C 0.06 0.90 6.84 37.20 0.25 1.15 16 17 O -0.38 -7.06 10.70 -42.35 -0.45 -7.51 16 18 C 0.05 0.94 5.10 37.16 0.19 1.13 16 19 C 0.16 3.79 4.10 -3.57 -0.01 3.77 16 20 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 21 H 0.06 1.24 7.96 -51.93 -0.41 0.83 16 22 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.93 6.21 -51.93 -0.32 0.60 16 24 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 25 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.07 1.18 7.84 -51.93 -0.41 0.78 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.11 2.24 6.06 -51.93 -0.31 1.93 16 33 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.09 2.44 6.14 -51.93 -0.32 2.12 16 LS Contribution 264.42 15.07 3.98 3.98 Total: -1.00 -29.63 264.42 -6.81 -36.43 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -5.13 Total: 0.09 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 0.06 Total: -0.61 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.17 Total: -40.62 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.86 Total: -15.63 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.63 -6.81 -36.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586772806.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.279 kcal (2) G-P(sol) polarization free energy of solvation -29.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds