Wall clock time and date at job start Mon Mar 30 2020 02:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00428 * 2 1 4 4 H 1.48496 * 109.47194 * 240.00251 * 3 2 1 5 5 H 1.48502 * 109.46666 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47379 * 120.00163 * 3 2 1 7 7 C 1.38816 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00200 * 196.89277 * 7 2 1 9 9 N 1.36935 * 119.99849 * 16.89690 * 7 2 1 10 10 C 1.47157 * 120.98838 * 206.20500 * 9 7 2 11 11 C 1.53293 * 108.41883 * 230.53433 * 10 9 7 12 12 O 1.42982 * 109.20947 * 307.66289 * 11 10 9 13 13 C 1.42945 * 114.18956 * 62.45828 * 12 11 10 14 14 C 1.53075 * 109.60886 * 177.56533 * 13 12 11 15 15 C 1.53195 * 109.02606 * 296.75411 * 14 13 12 16 16 C 1.53087 * 109.15157 * 303.12602 * 15 14 13 17 17 O 1.42894 * 109.45567 * 57.62289 * 16 15 14 18 18 C 1.42917 * 114.08801 * 298.82874 * 17 16 15 19 19 C 1.47174 * 120.99179 * 26.17905 * 9 7 2 20 20 H 0.96994 * 119.99397 * 359.97438 * 1 2 3 21 21 H 1.08994 * 109.67426 * 350.26698 * 10 9 7 22 22 H 1.09002 * 109.67308 * 110.76726 * 10 9 7 23 23 H 1.08996 * 109.51490 * 67.58486 * 11 10 9 24 24 H 1.08996 * 109.51354 * 187.74291 * 11 10 9 25 25 H 1.09000 * 109.53994 * 56.62330 * 14 13 12 26 26 H 1.09004 * 109.54445 * 176.88679 * 14 13 12 27 27 H 1.09005 * 109.52546 * 63.03029 * 15 14 13 28 28 H 1.09004 * 109.52513 * 183.15789 * 15 14 13 29 29 H 1.08993 * 109.47513 * 177.61780 * 16 15 14 30 30 H 1.08996 * 109.47291 * 297.62440 * 16 15 14 31 31 H 1.09007 * 109.48760 * 301.06776 * 18 17 16 32 32 H 1.09001 * 109.48908 * 181.02361 * 18 17 16 33 33 H 1.08995 * 109.68321 * 249.33168 * 19 9 7 34 34 H 1.08995 * 109.68454 * 9.85805 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0554 -1.2225 0.2712 9 7 1.3699 -2.3623 -0.3457 10 6 1.8344 -3.6636 0.1605 11 6 1.9814 -4.6210 -1.0277 12 8 0.7642 -4.6303 -1.7778 13 6 0.4205 -3.3672 -2.3522 14 6 -0.8606 -3.5098 -3.1778 15 6 -0.6009 -4.4731 -4.3403 16 6 0.5740 -3.9517 -5.1718 17 8 1.7248 -3.8146 -4.3359 18 6 1.5568 -2.8901 -3.2591 19 6 0.1962 -2.3448 -1.2336 20 1 -0.4849 0.8400 0.0004 21 1 2.7979 -3.5422 0.6553 22 1 1.1069 -4.0635 0.8668 23 1 2.7997 -4.2869 -1.6655 24 1 2.1911 -5.6260 -0.6616 25 1 -1.6580 -3.9044 -2.5481 26 1 -1.1521 -2.5354 -3.5697 27 1 -0.3595 -5.4610 -3.9478 28 1 -1.4912 -4.5374 -4.9660 29 1 0.7906 -4.6550 -5.9758 30 1 0.3160 -2.9819 -5.5970 31 1 1.3135 -1.9059 -3.6594 32 1 2.4806 -2.8304 -2.6836 33 1 -0.6965 -2.6101 -0.6673 34 1 0.0761 -1.3505 -1.6637 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000586772806.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:52 Heat of formation + Delta-G solvation = -87.124990 kcal Electronic energy + Delta-G solvation = -17299.062759 eV Core-core repulsion = 14617.882435 eV Total energy + Delta-G solvation = -2681.180324 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.29278 -38.59615 -36.25436 -34.53728 -33.21540 -32.23460 -29.40828 -27.60188 -26.15881 -24.97253 -23.89917 -21.82343 -20.44091 -18.82387 -17.66317 -17.42522 -16.77173 -16.29069 -16.08012 -15.73204 -15.42689 -15.37182 -14.62009 -14.56380 -13.94383 -13.53499 -13.37477 -13.06607 -12.77565 -12.70169 -12.39864 -12.30979 -12.17243 -12.00848 -11.69040 -11.43291 -11.18562 -10.74668 -10.63670 -10.10801 -8.72450 -7.91111 -5.38365 1.45632 1.47667 1.54530 2.46461 2.80564 3.05171 3.22762 3.49396 3.87857 3.88200 4.01341 4.07003 4.28394 4.38827 4.43771 4.55118 4.59901 4.66983 4.71525 4.83454 4.95415 4.98109 5.02103 5.07825 5.18889 5.25395 5.39184 5.50673 5.59445 6.18619 6.28833 6.47196 7.05377 7.73716 8.28844 9.14349 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.032792 B = 0.009947 C = 0.009111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.672668 B = 2814.131323 C = 3072.417910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.048 4.048 3 Si 0.968 3.032 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.266 4.266 8 H 0.072 0.928 9 N -0.612 5.612 10 C 0.104 3.896 11 C 0.052 3.948 12 O -0.381 6.381 13 C 0.069 3.931 14 C -0.107 4.107 15 C -0.140 4.140 16 C 0.052 3.948 17 O -0.395 6.395 18 C 0.060 3.940 19 C 0.168 3.832 20 H 0.252 0.748 21 H 0.071 0.929 22 H 0.015 0.985 23 H 0.048 0.952 24 H 0.114 0.886 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.099 0.901 29 H 0.115 0.885 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.086 0.914 33 H -0.003 1.003 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.573 -7.360 -8.711 11.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.244 4.244 3 Si 0.795 3.205 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.395 4.395 8 H 0.090 0.910 9 N -0.337 5.337 10 C -0.021 4.021 11 C -0.026 4.026 12 O -0.300 6.300 13 C 0.028 3.972 14 C -0.145 4.145 15 C -0.178 4.178 16 C -0.025 4.025 17 O -0.314 6.314 18 C -0.017 4.017 19 C 0.042 3.958 20 H 0.061 0.939 21 H 0.090 0.910 22 H 0.033 0.967 23 H 0.067 0.933 24 H 0.132 0.868 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.118 0.882 29 H 0.133 0.867 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.105 0.895 33 H 0.015 0.985 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.542 -7.486 -8.741 11.521 hybrid contribution 0.059 1.475 0.706 1.636 sum 0.601 -6.012 -8.035 10.053 Atomic orbital electron populations 1.70176 1.06657 1.26096 1.55162 1.25794 0.96064 1.01467 1.01029 0.85340 0.77601 0.79075 0.78460 1.20188 1.21932 1.20121 1.19506 0.92984 0.85557 1.41477 0.91045 1.44361 1.33613 1.02121 1.53582 1.21792 0.98484 0.86657 0.95170 1.23055 0.86691 1.00497 0.92367 1.87804 1.42076 1.31049 1.69074 1.22667 0.95834 0.85273 0.93406 1.21551 0.95019 1.00950 0.96963 1.22072 0.99772 0.99200 0.96738 1.22835 0.85543 1.01343 0.92737 1.87871 1.38021 1.63936 1.41540 1.22792 0.99694 0.91416 0.87805 1.21112 0.87892 0.97319 0.89464 0.93917 0.91025 0.96658 0.93330 0.86770 0.91310 0.90240 0.91508 0.88215 0.86684 0.92633 0.93331 0.89541 0.98522 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.86 11.14 21.65 0.24 -54.62 16 2 C -0.05 -2.65 4.95 84.86 0.42 -2.24 16 3 Si 0.97 44.30 29.59 68.60 2.03 46.33 16 4 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 6 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 7 C -0.27 -14.52 9.65 84.03 0.81 -13.71 16 8 H 0.07 3.77 7.88 -2.91 -0.02 3.75 16 9 N -0.61 -31.26 2.62 -697.68 -1.83 -33.09 16 10 C 0.10 4.48 6.73 86.35 0.58 5.06 16 11 C 0.05 1.90 6.61 72.08 0.48 2.37 16 12 O -0.38 -15.25 9.67 -142.17 -1.37 -16.62 16 13 C 0.07 2.77 0.71 -10.70 -0.01 2.76 16 14 C -0.11 -3.52 5.04 30.68 0.15 -3.37 16 15 C -0.14 -3.66 5.98 30.69 0.18 -3.48 16 16 C 0.05 1.34 6.84 72.01 0.49 1.84 16 17 O -0.39 -13.71 10.70 -142.17 -1.52 -15.23 16 18 C 0.06 2.32 5.10 71.99 0.37 2.69 16 19 C 0.17 8.30 4.10 86.32 0.35 8.65 16 20 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 21 H 0.07 2.86 7.96 -2.39 -0.02 2.85 16 22 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 23 H 0.05 1.80 6.21 -2.39 -0.01 1.79 16 24 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 25 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 27 H 0.07 1.89 7.84 -2.38 -0.02 1.87 16 28 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 32 H 0.09 3.66 6.06 -2.39 -0.01 3.64 16 33 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 34 H 0.07 3.67 6.14 -2.39 -0.01 3.65 16 Total: -1.00 -63.78 264.42 2.45 -61.34 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: 1.07 Total: 11.32 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 3.83 Total: 0.58 kcal Atomic # 7 Polarization: -86.12 SS G_CDS: -1.59 Total: -87.70 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -2.90 Total: -31.85 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -63.78 2.45 -61.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586772806.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.790 kcal (2) G-P(sol) polarization free energy of solvation -63.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds