Wall clock time and date at job start Mon Mar 30 2020 02:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86805 * 119.99843 * 2 1 4 4 H 1.48503 * 109.46900 * 270.00007 * 3 2 1 5 5 H 1.48493 * 109.47010 * 30.00041 * 3 2 1 6 6 H 1.48493 * 109.46927 * 150.00057 * 3 2 1 7 7 C 1.40047 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00042 * 180.02562 * 7 2 1 9 9 C 1.46371 * 120.00139 * 359.97438 * 7 2 1 10 10 O 1.21694 * 119.99855 * 0.02562 * 9 7 2 11 11 N 1.34774 * 120.00063 * 180.02562 * 9 7 2 12 12 C 1.46500 * 120.00155 * 185.04189 * 11 9 7 13 13 C 1.52995 * 110.53905 * 296.37998 * 12 11 9 14 14 C 1.53007 * 109.46868 * 306.32104 * 13 12 11 15 15 O 1.42908 * 109.46965 * 175.22133 * 14 13 12 16 16 C 1.54888 * 110.48904 * 173.76287 * 12 11 9 17 17 C 1.54890 * 102.74814 * 279.26582 * 16 12 11 18 18 C 1.54261 * 104.19526 * 322.05486 * 17 16 12 19 19 C 1.53876 * 106.59971 * 23.61145 * 18 17 16 20 20 H 0.97000 * 120.00168 * 0.02562 * 1 2 3 21 21 H 0.97001 * 120.00048 * 5.03868 * 11 9 7 22 22 H 1.09000 * 109.47316 * 66.32376 * 13 12 11 23 23 H 1.09003 * 109.47085 * 186.32546 * 13 12 11 24 24 H 1.08998 * 109.47445 * 295.22506 * 14 13 12 25 25 H 1.09002 * 109.46669 * 55.22621 * 14 13 12 26 26 H 0.96702 * 113.99420 * 180.02562 * 15 14 13 27 27 H 1.08995 * 110.75243 * 37.58119 * 16 12 11 28 28 H 1.08999 * 110.75902 * 160.94760 * 16 12 11 29 29 H 1.09003 * 110.48037 * 203.38015 * 17 16 12 30 30 H 1.08995 * 110.48738 * 80.73820 * 17 16 12 31 31 H 1.09003 * 110.03532 * 264.32569 * 18 17 16 32 32 H 1.08996 * 110.03325 * 142.90096 * 18 17 16 33 33 H 1.09004 * 110.03317 * 240.71280 * 19 18 17 34 34 H 1.08998 * 110.02915 * 119.28448 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4881 2.0465 -1.4001 5 1 1.4381 2.6526 0.7000 6 1 3.5382 1.4402 0.7000 7 6 2.0069 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0017 10 8 0.0582 -2.4805 0.0017 11 7 1.9490 -3.6476 0.0027 12 6 1.2208 -4.9140 -0.1076 13 6 0.3061 -5.1145 1.1022 14 6 1.1241 -4.9782 2.3881 15 8 0.2520 -5.0545 3.5177 16 6 2.2100 -6.0984 -0.2415 17 6 2.5882 -6.0598 -1.7430 18 6 1.2726 -5.6830 -2.4549 19 6 0.4031 -4.9545 -1.4151 20 1 -0.4850 0.8400 -0.0004 21 1 2.9162 -3.6492 0.0765 22 1 -0.4815 -4.3610 1.0911 23 1 -0.1407 -6.1078 1.0594 24 1 1.8568 -5.7835 2.4397 25 1 1.6391 -4.0176 2.3909 26 1 0.7035 -4.9750 4.3691 27 1 3.0894 -5.9395 0.3826 28 1 1.7217 -7.0399 0.0098 29 1 2.9345 -7.0388 -2.0744 30 1 3.3509 -5.3027 -1.9250 31 1 0.7647 -6.5829 -2.8017 32 1 1.4796 -5.0227 -3.2971 33 1 -0.5268 -5.5009 -1.2573 34 1 0.1883 -3.9406 -1.7527 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586873111.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:36 Heat of formation + Delta-G solvation = -107.600662 kcal Electronic energy + Delta-G solvation = -16672.737353 eV Core-core repulsion = 13990.669137 eV Total energy + Delta-G solvation = -2682.068216 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.17519 -36.26248 -36.01071 -32.69326 -31.99633 -30.29686 -28.33115 -26.59836 -25.53183 -21.99339 -20.62914 -20.01712 -18.15933 -17.13066 -16.88350 -15.35000 -15.29424 -14.79375 -14.40254 -13.99012 -13.54906 -13.27630 -12.87462 -12.39169 -12.17859 -11.46728 -11.31388 -11.12464 -10.87338 -10.82738 -10.76120 -10.60349 -10.46313 -10.36238 -10.17393 -9.98186 -9.91303 -9.41084 -8.82039 -7.45362 -7.41130 -6.14106 -4.60483 3.14654 3.21822 3.24614 4.12054 4.61024 4.65096 4.86570 5.03049 5.06024 5.30613 5.65071 5.76467 5.77394 5.87380 5.92754 5.98826 6.10034 6.11784 6.14149 6.23308 6.34927 6.54269 6.58084 6.67429 6.75530 7.07231 7.14218 7.46052 7.96486 8.05103 8.20393 8.37871 9.06113 9.60568 10.64208 10.84832 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.025287 B = 0.009322 C = 0.007813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.032366 B = 3002.773681 C = 3582.853415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.089 3.911 3 Si 0.904 3.096 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.548 4.548 8 H 0.064 0.936 9 C 0.558 3.442 10 O -0.571 6.571 11 N -0.755 5.755 12 C 0.192 3.808 13 C -0.121 4.121 14 C 0.083 3.917 15 O -0.578 6.578 16 C -0.127 4.127 17 C -0.120 4.120 18 C -0.121 4.121 19 C -0.125 4.125 20 H 0.267 0.733 21 H 0.377 0.623 22 H 0.094 0.906 23 H 0.055 0.945 24 H 0.031 0.969 25 H 0.055 0.945 26 H 0.370 0.630 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.720 -9.503 0.315 11.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.131 4.131 3 Si 0.729 3.271 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.585 4.585 8 H 0.083 0.917 9 C 0.362 3.638 10 O -0.453 6.453 11 N -0.410 5.410 12 C 0.104 3.896 13 C -0.160 4.160 14 C 0.006 3.994 15 O -0.382 6.382 16 C -0.165 4.165 17 C -0.158 4.158 18 C -0.159 4.159 19 C -0.163 4.163 20 H 0.078 0.922 21 H 0.209 0.791 22 H 0.113 0.887 23 H 0.073 0.927 24 H 0.049 0.951 25 H 0.073 0.927 26 H 0.215 0.785 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.176 -9.455 -0.192 10.338 hybrid contribution 1.435 0.896 0.429 1.745 sum 5.611 -8.559 0.238 10.237 Atomic orbital electron populations 1.70013 1.06925 1.27102 1.35479 1.25666 0.94567 1.00101 0.92724 0.86442 0.80175 0.81773 0.78752 1.19846 1.20537 1.19038 1.20898 0.93472 0.89617 1.54520 0.91735 1.18094 0.87269 0.82210 0.76202 1.90583 1.13864 1.86695 1.54172 1.46212 1.08500 1.04511 1.81823 1.20558 0.91077 0.84898 0.93046 1.21864 0.99990 1.02011 0.92095 1.22166 0.91831 0.99549 0.85875 1.86490 1.38461 1.96765 1.16474 1.22814 0.98989 0.98203 0.96518 1.22308 0.97852 1.00427 0.95178 1.22107 0.95875 0.99348 0.98539 1.22461 0.97328 1.02177 0.94371 0.92219 0.79112 0.88747 0.92658 0.95122 0.92682 0.78492 0.91664 0.91042 0.92444 0.91588 0.92743 0.92328 0.92388 0.89608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.82 11.83 55.55 0.66 -22.17 16 2 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 3 Si 0.90 20.16 29.56 -169.99 -5.02 15.13 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.55 -15.21 9.54 -35.63 -0.34 -15.55 16 8 H 0.06 1.65 7.85 -52.48 -0.41 1.24 16 9 C 0.56 15.21 6.85 -12.99 -0.09 15.12 16 10 O -0.57 -17.55 11.99 5.19 0.06 -17.48 16 11 N -0.76 -16.12 4.07 -47.46 -0.19 -16.32 16 12 C 0.19 3.58 0.43 -130.16 -0.06 3.53 16 13 C -0.12 -2.39 4.29 -26.73 -0.11 -2.50 16 14 C 0.08 1.50 6.72 37.16 0.25 1.75 16 15 O -0.58 -10.32 13.66 -35.23 -0.48 -10.80 16 16 C -0.13 -1.83 5.21 -24.74 -0.13 -1.96 16 17 C -0.12 -1.65 6.79 -25.07 -0.17 -1.82 16 18 C -0.12 -1.86 6.80 -25.62 -0.17 -2.04 16 19 C -0.12 -2.39 5.66 -25.61 -0.15 -2.53 16 20 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 21 H 0.38 7.22 8.46 -40.82 -0.35 6.88 16 22 H 0.09 2.32 6.54 -51.93 -0.34 1.98 16 23 H 0.05 0.98 8.05 -51.93 -0.42 0.57 16 24 H 0.03 0.46 7.72 -51.93 -0.40 0.06 16 25 H 0.05 1.11 7.29 -51.93 -0.38 0.73 16 26 H 0.37 4.62 9.12 45.56 0.42 5.03 16 27 H 0.06 0.87 8.05 -51.93 -0.42 0.45 16 28 H 0.07 0.94 7.99 -51.93 -0.41 0.53 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.06 1.06 7.84 -51.93 -0.41 0.65 16 34 H 0.09 2.02 6.38 -51.93 -0.33 1.69 16 LS Contribution 276.35 15.07 4.16 4.16 Total: -1.00 -33.32 276.35 -6.15 -39.47 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -4.27 Total: 11.63 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -1.06 Total: -3.63 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.46 Total: -38.48 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.42 Total: -28.28 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -33.32 -6.15 -39.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586873111.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.132 kcal (2) G-P(sol) polarization free energy of solvation -33.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds