Wall clock time and date at job start Mon Mar 30 2020 02:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86805 * 119.99843 * 2 1 4 4 H 1.48503 * 109.46900 * 270.00007 * 3 2 1 5 5 H 1.48493 * 109.47010 * 30.00041 * 3 2 1 6 6 H 1.48493 * 109.46927 * 150.00057 * 3 2 1 7 7 C 1.40047 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00042 * 180.02562 * 7 2 1 9 9 C 1.46371 * 120.00139 * 359.97438 * 7 2 1 10 10 O 1.21694 * 119.99855 * 0.02562 * 9 7 2 11 11 N 1.34774 * 120.00063 * 180.02562 * 9 7 2 12 12 C 1.46500 * 120.00155 * 185.04189 * 11 9 7 13 13 C 1.52995 * 110.53905 * 296.37998 * 12 11 9 14 14 C 1.53007 * 109.46868 * 306.32104 * 13 12 11 15 15 O 1.42908 * 109.46965 * 175.22133 * 14 13 12 16 16 C 1.54888 * 110.48904 * 173.76287 * 12 11 9 17 17 C 1.54890 * 102.74814 * 279.26582 * 16 12 11 18 18 C 1.54261 * 104.19526 * 322.05486 * 17 16 12 19 19 C 1.53876 * 106.59971 * 23.61145 * 18 17 16 20 20 H 0.97000 * 120.00168 * 0.02562 * 1 2 3 21 21 H 0.97001 * 120.00048 * 5.03868 * 11 9 7 22 22 H 1.09000 * 109.47316 * 66.32376 * 13 12 11 23 23 H 1.09003 * 109.47085 * 186.32546 * 13 12 11 24 24 H 1.08998 * 109.47445 * 295.22506 * 14 13 12 25 25 H 1.09002 * 109.46669 * 55.22621 * 14 13 12 26 26 H 0.96702 * 113.99420 * 180.02562 * 15 14 13 27 27 H 1.08995 * 110.75243 * 37.58119 * 16 12 11 28 28 H 1.08999 * 110.75902 * 160.94760 * 16 12 11 29 29 H 1.09003 * 110.48037 * 203.38015 * 17 16 12 30 30 H 1.08995 * 110.48738 * 80.73820 * 17 16 12 31 31 H 1.09003 * 110.03532 * 264.32569 * 18 17 16 32 32 H 1.08996 * 110.03325 * 142.90096 * 18 17 16 33 33 H 1.09004 * 110.03317 * 240.71280 * 19 18 17 34 34 H 1.08998 * 110.02915 * 119.28448 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4881 2.0465 -1.4001 5 1 1.4381 2.6526 0.7000 6 1 3.5382 1.4402 0.7000 7 6 2.0069 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0017 10 8 0.0582 -2.4805 0.0017 11 7 1.9490 -3.6476 0.0027 12 6 1.2208 -4.9140 -0.1076 13 6 0.3061 -5.1145 1.1022 14 6 1.1241 -4.9782 2.3881 15 8 0.2520 -5.0545 3.5177 16 6 2.2100 -6.0984 -0.2415 17 6 2.5882 -6.0598 -1.7430 18 6 1.2726 -5.6830 -2.4549 19 6 0.4031 -4.9545 -1.4151 20 1 -0.4850 0.8400 -0.0004 21 1 2.9162 -3.6492 0.0765 22 1 -0.4815 -4.3610 1.0911 23 1 -0.1407 -6.1078 1.0594 24 1 1.8568 -5.7835 2.4397 25 1 1.6391 -4.0176 2.3909 26 1 0.7035 -4.9750 4.3691 27 1 3.0894 -5.9395 0.3826 28 1 1.7217 -7.0399 0.0098 29 1 2.9345 -7.0388 -2.0744 30 1 3.3509 -5.3027 -1.9250 31 1 0.7647 -6.5829 -2.8017 32 1 1.4796 -5.0227 -3.2971 33 1 -0.5268 -5.5009 -1.2573 34 1 0.1883 -3.9406 -1.7527 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000586873111.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:35 Heat of formation + Delta-G solvation = -134.094962 kcal Electronic energy + Delta-G solvation = -16673.886232 eV Core-core repulsion = 13990.669137 eV Total energy + Delta-G solvation = -2683.217095 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.76425 -38.01214 -37.55501 -34.66682 -33.78831 -32.00332 -29.64334 -28.45952 -27.16686 -23.42529 -22.52172 -21.27904 -19.84462 -19.08280 -18.31213 -17.35076 -16.81568 -16.25426 -15.87593 -15.64478 -15.03983 -14.83048 -14.56270 -14.21222 -13.80926 -13.18488 -12.95701 -12.81015 -12.57485 -12.41625 -12.24762 -12.01384 -11.98923 -11.88625 -11.87526 -11.40312 -11.25761 -10.89362 -10.84016 -9.59680 -9.28377 -8.22511 -6.79053 1.38553 1.40067 1.54378 2.24957 2.54801 3.14360 3.36561 3.63611 3.74523 3.89165 4.10246 4.24085 4.34477 4.48204 4.60623 4.65676 4.72921 4.84557 4.91134 4.99471 5.11972 5.14432 5.17766 5.30399 5.35138 5.40373 5.48930 5.60425 5.94782 6.31899 6.48742 6.90615 6.92659 7.69212 8.58999 8.78675 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.025287 B = 0.009322 C = 0.007813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.032366 B = 3002.773681 C = 3582.853415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.030 3.970 3 Si 0.990 3.010 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.249 1.249 7 C -0.578 4.578 8 H 0.082 0.918 9 C 0.547 3.453 10 O -0.615 6.615 11 N -0.740 5.740 12 C 0.183 3.817 13 C -0.120 4.120 14 C 0.090 3.910 15 O -0.597 6.597 16 C -0.114 4.114 17 C -0.114 4.114 18 C -0.116 4.116 19 C -0.128 4.128 20 H 0.271 0.729 21 H 0.391 0.609 22 H 0.033 0.967 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.027 0.973 26 H 0.393 0.607 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.406 -10.999 0.454 13.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.184 4.184 3 Si 0.810 3.190 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.172 1.172 7 C -0.614 4.614 8 H 0.100 0.900 9 C 0.350 3.650 10 O -0.501 6.501 11 N -0.394 5.394 12 C 0.096 3.904 13 C -0.159 4.159 14 C 0.013 3.987 15 O -0.405 6.405 16 C -0.152 4.152 17 C -0.151 4.151 18 C -0.154 4.154 19 C -0.166 4.166 20 H 0.080 0.920 21 H 0.224 0.776 22 H 0.052 0.948 23 H 0.095 0.905 24 H 0.092 0.908 25 H 0.045 0.955 26 H 0.242 0.758 27 H 0.103 0.897 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 6.915 -10.996 -0.038 12.990 hybrid contribution 0.532 1.287 0.407 1.450 sum 7.447 -9.710 0.368 12.242 Atomic orbital electron populations 1.70196 1.09358 1.28501 1.37174 1.26870 0.95423 1.04688 0.91454 0.85127 0.78880 0.75703 0.79240 1.18859 1.20118 1.17236 1.21458 0.94528 0.90578 1.54884 0.89969 1.18351 0.86873 0.83992 0.75764 1.90557 1.15881 1.87772 1.55922 1.45828 1.09028 1.04305 1.80234 1.20826 0.92110 0.85337 0.92157 1.21815 0.99024 1.01037 0.93976 1.22058 0.91865 0.99614 0.85186 1.86437 1.39576 1.96731 1.17803 1.22793 0.98334 0.96537 0.97505 1.22311 0.96345 1.02200 0.94246 1.22091 0.96558 0.99638 0.97118 1.22425 0.98638 0.99420 0.96163 0.91954 0.77585 0.94792 0.90526 0.90789 0.95491 0.75819 0.89667 0.88612 0.88845 0.92098 0.90163 0.93302 0.92448 0.95281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.19 11.83 21.84 0.26 -50.93 16 2 C 0.03 1.71 5.50 85.30 0.47 2.18 16 3 Si 0.99 41.74 29.56 68.60 2.03 43.77 16 4 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.28 -11.34 7.11 99.48 0.71 -10.64 16 6 H -0.25 -9.71 7.11 99.48 0.71 -9.01 16 7 C -0.58 -32.75 9.54 24.83 0.24 -32.52 16 8 H 0.08 4.20 7.85 -2.91 -0.02 4.17 16 9 C 0.55 31.07 6.85 86.36 0.59 31.66 16 10 O -0.62 -40.39 11.99 -4.33 -0.05 -40.44 16 11 N -0.74 -31.89 4.07 -422.30 -1.72 -33.60 16 12 C 0.18 6.73 0.43 4.68 0.00 6.73 16 13 C -0.12 -4.76 4.29 30.60 0.13 -4.63 16 14 C 0.09 3.15 6.72 71.98 0.48 3.63 16 15 O -0.60 -20.85 13.66 -148.98 -2.04 -22.89 16 16 C -0.11 -2.83 5.21 31.88 0.17 -2.67 16 17 C -0.11 -2.68 6.79 31.67 0.22 -2.46 16 18 C -0.12 -3.39 6.80 31.32 0.21 -3.17 16 19 C -0.13 -5.00 5.66 31.32 0.18 -4.82 16 20 H 0.27 15.41 8.29 -92.71 -0.77 14.64 16 21 H 0.39 14.59 8.46 -92.71 -0.78 13.80 16 22 H 0.03 1.75 6.54 -2.39 -0.02 1.74 16 23 H 0.08 2.65 8.05 -2.39 -0.02 2.63 16 24 H 0.07 1.96 7.72 -2.39 -0.02 1.94 16 25 H 0.03 1.08 7.29 -2.39 -0.02 1.06 16 26 H 0.39 9.23 9.12 -74.06 -0.68 8.55 16 27 H 0.08 1.83 8.05 -2.39 -0.02 1.82 16 28 H 0.10 2.00 7.99 -2.39 -0.02 1.98 16 29 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 2.17 7.84 -2.38 -0.02 2.15 16 34 H 0.03 1.45 6.38 -2.39 -0.02 1.43 16 Total: -1.00 -78.15 276.35 0.82 -77.34 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: -0.35 Total: 32.83 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: 2.69 Total: -6.06 kcal Atomic # 7 Polarization: -83.08 SS G_CDS: -1.46 Total: -84.54 kcal Atomic # 8 Polarization: -61.24 SS G_CDS: -2.09 Total: -63.33 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -78.15 0.82 -77.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586873111.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.760 kcal (2) G-P(sol) polarization free energy of solvation -78.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds