Wall clock time and date at job start Mon Mar 30 2020 03:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48496 * 109.47191 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47055 * 299.99664 * 3 2 1 6 6 H 1.48498 * 109.47283 * 59.99740 * 3 2 1 7 7 C 1.40050 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.46373 * 119.99716 * 0.28083 * 7 2 1 10 10 O 1.21683 * 120.00158 * 359.71943 * 9 7 2 11 11 N 1.34775 * 119.99634 * 179.71971 * 9 7 2 12 12 C 1.46507 * 119.99876 * 179.97438 * 11 9 7 13 13 C 1.53003 * 109.46968 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.46511 * 180.02562 * 13 12 11 15 15 H 1.08995 * 109.52678 * 54.99912 * 14 13 12 16 16 C 1.53181 * 109.51804 * 175.12780 * 14 13 12 17 17 C 1.53190 * 109.03380 * 176.81953 * 16 14 13 18 18 C 1.53084 * 109.21236 * 303.11226 * 17 16 14 19 19 O 1.42905 * 109.41770 * 57.57514 * 18 17 16 20 20 C 1.42908 * 114.09604 * 298.84132 * 19 18 17 21 21 H 0.97005 * 120.00029 * 0.02562 * 1 2 3 22 22 H 0.97000 * 120.00523 * 0.02562 * 11 9 7 23 23 H 1.09004 * 109.47205 * 300.00465 * 12 11 9 24 24 H 1.08994 * 109.46660 * 60.00264 * 12 11 9 25 25 H 1.08998 * 109.46943 * 299.99694 * 13 12 11 26 26 H 1.08994 * 109.47116 * 60.00083 * 13 12 11 27 27 H 1.09003 * 109.54501 * 296.74585 * 16 14 13 28 28 H 1.09000 * 109.55073 * 57.01186 * 16 14 13 29 29 H 1.08994 * 109.52862 * 183.17134 * 17 16 14 30 30 H 1.09001 * 109.51618 * 63.04431 * 17 16 14 31 31 H 1.08998 * 109.48510 * 297.59275 * 18 17 16 32 32 H 1.09002 * 109.48144 * 177.55518 * 18 17 16 33 33 H 1.09004 * 109.47626 * 301.17494 * 20 19 18 34 34 H 1.08994 * 109.49191 * 181.14930 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3465 -0.0006 5 1 1.8820 2.3965 -1.2126 6 1 1.8820 2.3965 1.2124 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2751 -2.4805 -0.0051 10 8 0.0583 -2.4805 -0.0051 11 7 1.9491 -3.6476 -0.0103 12 6 1.2166 -4.9164 -0.0154 13 6 2.2109 -6.0793 -0.0200 14 6 1.4458 -7.4042 -0.0260 15 1 0.7537 -7.4215 -0.8678 16 6 2.4358 -8.5662 -0.1532 17 6 1.6662 -9.8887 -0.0781 18 6 0.8759 -9.9379 1.2321 19 8 -0.0031 -8.8131 1.2992 20 6 0.6641 -7.5495 1.2823 21 1 -0.4850 0.8401 -0.0004 22 1 2.9191 -3.6476 -0.0099 23 1 0.5902 -4.9779 0.8746 24 1 0.5897 -4.9703 -0.9054 25 1 2.8375 -6.0179 -0.9098 26 1 2.8375 -6.0251 0.8702 27 1 2.9554 -8.4996 -1.1091 28 1 3.1594 -8.5198 0.6606 29 1 2.3686 -10.7214 -0.1113 30 1 0.9786 -9.9583 -0.9210 31 1 1.5668 -9.9100 2.0747 32 1 0.2925 -10.8579 1.2704 33 1 1.3523 -7.4905 2.1255 34 1 -0.0716 -6.7488 1.3569 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600166167.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:56 Heat of formation + Delta-G solvation = -111.586667 kcal Electronic energy + Delta-G solvation = -15610.817127 eV Core-core repulsion = 12928.576064 eV Total energy + Delta-G solvation = -2682.241062 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.51402 -37.31068 -35.14755 -33.25117 -32.40140 -31.57381 -28.15043 -26.04601 -25.08783 -23.61615 -21.17819 -20.17010 -19.54496 -17.10591 -16.32531 -16.17211 -15.28452 -15.00963 -14.67665 -14.35215 -13.96765 -13.77690 -13.47309 -12.70931 -12.47645 -12.31202 -11.96902 -11.39192 -11.35723 -11.20253 -11.09057 -10.98837 -10.57261 -10.52264 -10.37306 -10.20056 -10.13515 -9.45271 -8.83743 -7.58294 -7.45999 -6.16170 -4.61606 3.14319 3.22271 3.26819 3.85640 4.12296 4.58308 4.61827 4.69120 4.74060 4.85677 4.98153 5.18127 5.34117 5.43509 5.50136 5.59374 5.62893 5.73863 5.77361 5.84118 5.87083 5.96974 6.04179 6.15377 6.29574 6.61598 6.63920 7.17841 7.45636 7.96409 8.13842 8.35953 9.04936 9.57321 10.62956 10.81798 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.071894 B = 0.004555 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.368670 B = 6145.460090 C = 6381.580591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.553 3.447 10 O -0.581 6.581 11 N -0.769 5.769 12 C 0.131 3.869 13 C -0.122 4.122 14 C -0.119 4.119 15 H 0.081 0.919 16 C -0.117 4.117 17 C -0.156 4.156 18 C 0.059 3.941 19 O -0.383 6.383 20 C 0.062 3.938 21 H 0.267 0.733 22 H 0.379 0.621 23 H 0.048 0.952 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.089 0.911 33 H 0.050 0.950 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.172 -15.930 0.925 17.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.086 0.914 9 C 0.357 3.643 10 O -0.464 6.464 11 N -0.425 5.425 12 C 0.005 3.995 13 C -0.160 4.160 14 C -0.138 4.138 15 H 0.100 0.900 16 C -0.154 4.154 17 C -0.194 4.194 18 C -0.018 4.018 19 O -0.302 6.302 20 C -0.015 4.015 21 H 0.078 0.922 22 H 0.210 0.790 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.107 0.893 33 H 0.068 0.932 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.876 -15.845 0.937 16.604 hybrid contribution 1.287 0.801 -0.082 1.518 sum 6.163 -15.043 0.856 16.279 Atomic orbital electron populations 1.70038 1.07062 1.27104 1.35534 1.25716 0.94606 1.00291 0.92635 0.86325 0.80461 0.81801 0.78196 1.18812 1.20183 1.20167 1.20933 0.93587 0.89463 1.54365 0.91427 1.18238 0.87230 0.82531 0.76342 1.90596 1.14116 1.86920 1.54793 1.46143 1.08500 1.05046 1.82808 1.20927 0.94076 0.83817 1.00636 1.21776 0.98497 0.93317 1.02368 1.21735 0.97807 0.94669 0.99577 0.90050 1.21646 0.97653 0.93812 1.02330 1.22194 0.99813 0.98121 0.99257 1.22551 0.93405 0.89715 0.96151 1.87956 1.33620 1.14073 1.94552 1.22795 0.97184 0.85592 0.95883 0.92189 0.78960 0.93381 0.93444 0.91408 0.91682 0.91419 0.91860 0.91163 0.91073 0.93438 0.89256 0.93174 0.88030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.42 11.83 55.55 0.66 -22.76 16 2 C 0.09 2.46 5.50 -17.36 -0.10 2.37 16 3 Si 0.91 20.31 29.56 -169.99 -5.02 15.29 16 4 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 7 C -0.55 -15.68 9.54 -35.63 -0.34 -16.02 16 8 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 9 C 0.55 16.08 7.75 -12.99 -0.10 15.98 16 10 O -0.58 -19.28 15.02 5.20 0.08 -19.20 16 11 N -0.77 -17.45 5.55 -61.72 -0.34 -17.80 16 12 C 0.13 2.51 5.43 -4.04 -0.02 2.48 16 13 C -0.12 -1.68 4.80 -26.73 -0.13 -1.81 16 14 C -0.12 -1.47 2.39 -90.48 -0.22 -1.68 16 15 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 16 C -0.12 -1.18 5.32 -26.54 -0.14 -1.32 16 17 C -0.16 -1.43 6.13 -26.59 -0.16 -1.59 16 18 C 0.06 0.59 6.84 37.20 0.25 0.84 16 19 O -0.38 -5.16 10.77 -35.23 -0.38 -5.54 16 20 C 0.06 0.81 5.82 37.21 0.22 1.03 16 21 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 22 H 0.38 7.48 8.45 -40.82 -0.35 7.14 16 23 H 0.05 0.97 6.63 -51.93 -0.34 0.63 16 24 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 1.46 6.70 -51.93 -0.35 1.11 16 LS Contribution 281.05 15.07 4.24 4.24 Total: -1.00 -34.71 281.05 -6.74 -41.46 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -5.23 Total: 4.03 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -0.74 Total: 0.29 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.31 Total: -40.56 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.30 Total: -24.74 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -34.71 -6.74 -41.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600166167.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.130 kcal (2) G-P(sol) polarization free energy of solvation -34.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds