Wall clock time and date at job start Mon Mar 30 2020 03:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48496 * 109.47191 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47055 * 299.99664 * 3 2 1 6 6 H 1.48498 * 109.47283 * 59.99740 * 3 2 1 7 7 C 1.40050 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.46373 * 119.99716 * 0.28083 * 7 2 1 10 10 O 1.21683 * 120.00158 * 359.71943 * 9 7 2 11 11 N 1.34775 * 119.99634 * 179.71971 * 9 7 2 12 12 C 1.46507 * 119.99876 * 179.97438 * 11 9 7 13 13 C 1.53003 * 109.46968 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.46511 * 180.02562 * 13 12 11 15 15 H 1.08995 * 109.52678 * 54.99912 * 14 13 12 16 16 C 1.53181 * 109.51804 * 175.12780 * 14 13 12 17 17 C 1.53190 * 109.03380 * 176.81953 * 16 14 13 18 18 C 1.53084 * 109.21236 * 303.11226 * 17 16 14 19 19 O 1.42905 * 109.41770 * 57.57514 * 18 17 16 20 20 C 1.42908 * 114.09604 * 298.84132 * 19 18 17 21 21 H 0.97005 * 120.00029 * 0.02562 * 1 2 3 22 22 H 0.97000 * 120.00523 * 0.02562 * 11 9 7 23 23 H 1.09004 * 109.47205 * 300.00465 * 12 11 9 24 24 H 1.08994 * 109.46660 * 60.00264 * 12 11 9 25 25 H 1.08998 * 109.46943 * 299.99694 * 13 12 11 26 26 H 1.08994 * 109.47116 * 60.00083 * 13 12 11 27 27 H 1.09003 * 109.54501 * 296.74585 * 16 14 13 28 28 H 1.09000 * 109.55073 * 57.01186 * 16 14 13 29 29 H 1.08994 * 109.52862 * 183.17134 * 17 16 14 30 30 H 1.09001 * 109.51618 * 63.04431 * 17 16 14 31 31 H 1.08998 * 109.48510 * 297.59275 * 18 17 16 32 32 H 1.09002 * 109.48144 * 177.55518 * 18 17 16 33 33 H 1.09004 * 109.47626 * 301.17494 * 20 19 18 34 34 H 1.08994 * 109.49191 * 181.14930 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3465 -0.0006 5 1 1.8820 2.3965 -1.2126 6 1 1.8820 2.3965 1.2124 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2751 -2.4805 -0.0051 10 8 0.0583 -2.4805 -0.0051 11 7 1.9491 -3.6476 -0.0103 12 6 1.2166 -4.9164 -0.0154 13 6 2.2109 -6.0793 -0.0200 14 6 1.4458 -7.4042 -0.0260 15 1 0.7537 -7.4215 -0.8678 16 6 2.4358 -8.5662 -0.1532 17 6 1.6662 -9.8887 -0.0781 18 6 0.8759 -9.9379 1.2321 19 8 -0.0031 -8.8131 1.2992 20 6 0.6641 -7.5495 1.2823 21 1 -0.4850 0.8401 -0.0004 22 1 2.9191 -3.6476 -0.0099 23 1 0.5902 -4.9779 0.8746 24 1 0.5897 -4.9703 -0.9054 25 1 2.8375 -6.0179 -0.9098 26 1 2.8375 -6.0251 0.8702 27 1 2.9554 -8.4996 -1.1091 28 1 3.1594 -8.5198 0.6606 29 1 2.3686 -10.7214 -0.1113 30 1 0.9786 -9.9583 -0.9210 31 1 1.5668 -9.9100 2.0747 32 1 0.2925 -10.8579 1.2704 33 1 1.3523 -7.4905 2.1255 34 1 -0.0716 -6.7488 1.3569 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600166167.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:55 Heat of formation + Delta-G solvation = -137.549946 kcal Electronic energy + Delta-G solvation = -15611.942979 eV Core-core repulsion = 12928.576064 eV Total energy + Delta-G solvation = -2683.366914 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.49887 -39.34525 -36.55890 -34.81386 -34.31150 -32.90007 -29.69801 -27.92647 -26.02306 -24.89490 -22.36273 -21.75175 -20.95876 -19.15198 -17.47678 -17.30271 -17.13766 -16.19883 -16.05214 -15.89976 -15.41325 -15.13509 -14.69774 -14.19226 -14.04623 -13.54777 -13.37028 -13.02220 -12.80922 -12.68829 -12.59604 -12.34037 -12.05598 -11.97299 -11.79235 -11.43305 -11.17577 -10.94925 -10.38002 -9.87626 -9.48174 -8.29493 -6.86362 1.40773 1.41046 1.59369 2.25146 2.46790 2.93482 3.13153 3.61024 3.72776 3.79585 3.92815 4.05730 4.23843 4.29958 4.38328 4.47776 4.59114 4.63705 4.77105 4.84177 4.93199 4.96973 5.08865 5.16527 5.20346 5.28218 5.31915 5.43873 5.87582 6.23764 6.26601 6.29043 6.86314 7.56064 8.49024 8.67325 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.071894 B = 0.004555 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.368670 B = 6145.460090 C = 6381.580591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.026 3.974 3 Si 1.001 2.999 4 H -0.245 1.245 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.574 4.574 8 H 0.090 0.910 9 C 0.533 3.467 10 O -0.636 6.636 11 N -0.756 5.756 12 C 0.131 3.869 13 C -0.104 4.104 14 C -0.114 4.114 15 H 0.067 0.933 16 C -0.113 4.113 17 C -0.152 4.152 18 C 0.049 3.951 19 O -0.408 6.408 20 C 0.062 3.938 21 H 0.274 0.726 22 H 0.397 0.603 23 H 0.032 0.968 24 H 0.025 0.975 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.061 0.939 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.890 -16.402 0.964 18.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.189 4.189 3 Si 0.820 3.180 4 H -0.168 1.168 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.610 4.610 8 H 0.108 0.892 9 C 0.337 3.663 10 O -0.523 6.523 11 N -0.411 5.411 12 C 0.006 3.994 13 C -0.141 4.141 14 C -0.133 4.133 15 H 0.085 0.915 16 C -0.150 4.150 17 C -0.190 4.190 18 C -0.027 4.027 19 O -0.327 6.327 20 C -0.015 4.015 21 H 0.084 0.916 22 H 0.231 0.769 23 H 0.050 0.950 24 H 0.043 0.957 25 H 0.101 0.899 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.115 0.885 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.123 0.877 33 H 0.079 0.921 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.649 -16.377 0.975 18.101 hybrid contribution 0.402 0.846 -0.083 0.941 sum 8.051 -15.530 0.892 17.516 Atomic orbital electron populations 1.70210 1.09668 1.28911 1.36585 1.27037 0.95533 1.05142 0.91150 0.84925 0.79357 0.75169 0.78511 1.16805 1.19379 1.19339 1.21493 0.94823 0.90046 1.54659 0.89211 1.18704 0.86881 0.84618 0.76121 1.90549 1.16384 1.88094 1.57295 1.45819 1.09374 1.04793 1.81072 1.21048 0.95123 0.84362 0.98845 1.21648 0.97243 0.91403 1.03839 1.21670 0.98061 0.95021 0.98584 0.91487 1.21638 0.97129 0.92837 1.03435 1.22181 0.99967 0.98512 0.98342 1.22830 0.93700 0.88958 0.97189 1.87920 1.35206 1.14825 1.94768 1.22705 0.96712 0.85286 0.96778 0.91574 0.76949 0.94980 0.95666 0.89919 0.90029 0.90335 0.90608 0.88547 0.91838 0.92239 0.87742 0.92063 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.48 11.83 21.84 0.26 -51.22 16 2 C 0.03 1.48 5.50 85.30 0.47 1.95 16 3 Si 1.00 41.23 29.56 68.60 2.03 43.25 16 4 H -0.25 -9.24 7.11 99.48 0.71 -8.53 16 5 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 6 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.57 -33.00 9.54 24.83 0.24 -32.76 16 8 H 0.09 4.59 7.85 -2.91 -0.02 4.56 16 9 C 0.53 31.79 7.75 86.36 0.67 32.46 16 10 O -0.64 -44.10 15.02 -4.29 -0.06 -44.16 16 11 N -0.76 -34.56 5.55 -467.40 -2.59 -37.16 16 12 C 0.13 5.15 5.43 86.38 0.47 5.61 16 13 C -0.10 -2.71 4.80 30.60 0.15 -2.57 16 14 C -0.11 -2.71 2.39 -10.70 -0.03 -2.73 16 15 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 16 C -0.11 -1.95 5.32 30.72 0.16 -1.79 16 17 C -0.15 -2.38 6.13 30.69 0.19 -2.19 16 18 C 0.05 0.89 6.84 72.01 0.49 1.38 16 19 O -0.41 -10.82 10.77 -148.98 -1.60 -12.42 16 20 C 0.06 1.62 5.82 72.01 0.42 2.04 16 21 H 0.27 15.44 8.29 -92.70 -0.77 14.67 16 22 H 0.40 15.22 8.45 -92.71 -0.78 14.44 16 23 H 0.03 1.36 6.63 -2.38 -0.02 1.35 16 24 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 34 H 0.08 2.32 6.70 -2.39 -0.02 2.31 16 Total: -1.00 -78.01 281.05 1.55 -76.45 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.30 Total: 23.85 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 3.23 Total: 1.40 kcal Atomic # 7 Polarization: -86.04 SS G_CDS: -2.34 Total: -88.38 kcal Atomic # 8 Polarization: -54.92 SS G_CDS: -1.67 Total: -56.58 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.25 kcal Total: -78.01 1.55 -76.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600166167.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.095 kcal (2) G-P(sol) polarization free energy of solvation -78.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds