Wall clock time and date at job start Mon Mar 30 2020 03:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30681 * 1 3 3 Si 1.86798 * 119.99852 * 2 1 4 4 H 1.48496 * 109.47335 * 274.98129 * 3 2 1 5 5 H 1.48504 * 109.47363 * 34.98327 * 3 2 1 6 6 H 1.48499 * 109.46888 * 154.97972 * 3 2 1 7 7 C 1.40050 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99974 * 186.15380 * 7 2 1 9 9 C 1.46376 * 119.99812 * 6.14983 * 7 2 1 10 10 O 1.21684 * 120.00278 * 353.94244 * 9 7 2 11 11 N 1.34780 * 119.99644 * 173.93742 * 9 7 2 12 12 C 1.46496 * 119.99645 * 180.02562 * 11 9 7 13 13 C 1.53005 * 109.47062 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.47200 * 180.02562 * 13 12 11 15 15 H 1.09004 * 109.51608 * 304.86851 * 14 13 12 16 16 C 1.53174 * 109.57089 * 184.71423 * 14 13 12 17 17 C 1.53179 * 109.04325 * 183.08484 * 16 14 13 18 18 C 1.53092 * 109.16413 * 56.96530 * 17 16 14 19 19 O 1.42906 * 109.42220 * 302.41139 * 18 17 16 20 20 C 1.42898 * 114.10153 * 61.14563 * 19 18 17 21 21 H 0.96999 * 119.99596 * 0.02562 * 1 2 3 22 22 H 0.96993 * 120.00132 * 0.02562 * 11 9 7 23 23 H 1.09003 * 109.47720 * 59.99895 * 12 11 9 24 24 H 1.09001 * 109.47402 * 299.99991 * 12 11 9 25 25 H 1.08990 * 109.47200 * 59.99637 * 13 12 11 26 26 H 1.09001 * 109.46686 * 300.00039 * 13 12 11 27 27 H 1.08999 * 109.54733 * 302.94785 * 16 14 13 28 28 H 1.09005 * 109.54585 * 63.12528 * 16 14 13 29 29 H 1.09001 * 109.51288 * 297.06473 * 17 16 14 30 30 H 1.09000 * 109.53118 * 176.87421 * 17 16 14 31 31 H 1.08994 * 109.48283 * 182.42024 * 18 17 16 32 32 H 1.09000 * 109.47750 * 62.39272 * 18 17 16 33 33 H 1.09003 * 109.47568 * 58.82643 * 20 19 18 34 34 H 1.09000 * 109.48245 * 178.85867 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3830 2.1072 -1.3947 5 1 1.4948 2.6200 0.8027 6 1 3.5870 1.4121 0.5922 7 6 2.0071 -1.2129 0.0005 8 1 3.0823 -1.2155 0.1008 9 6 1.2814 -2.4769 -0.1347 10 8 0.0646 -2.4828 -0.1367 11 7 1.9612 -3.6343 -0.2571 12 6 1.2350 -4.8993 -0.3930 13 6 2.2350 -6.0510 -0.5137 14 6 1.4766 -7.3722 -0.6563 15 1 0.7841 -7.4864 0.1778 16 6 2.4712 -8.5371 -0.6591 17 6 1.7070 -9.8462 -0.8796 18 6 0.9174 -9.7530 -2.1879 19 8 0.0341 -8.6311 -2.1309 20 6 0.6961 -7.3745 -1.9733 21 1 -0.4849 0.8401 -0.0004 22 1 2.9311 -3.6296 -0.2552 23 1 0.6098 -4.8655 -1.2853 24 1 0.6073 -5.0541 0.4846 25 1 2.8597 -6.0848 0.3788 26 1 2.8630 -5.8964 -1.3911 27 1 3.1942 -8.3973 -1.4627 28 1 2.9921 -8.5742 0.2977 29 1 1.0193 -10.0105 -0.0501 30 1 2.4129 -10.6747 -0.9385 31 1 0.3378 -10.6653 -2.3285 32 1 1.6087 -9.6293 -3.0216 33 1 1.3846 -7.2197 -2.8041 34 1 -0.0430 -6.5735 -1.9593 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600166169.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:58 Heat of formation + Delta-G solvation = -111.629156 kcal Electronic energy + Delta-G solvation = -15612.441269 eV Core-core repulsion = 12930.198364 eV Total energy + Delta-G solvation = -2682.242905 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.51629 -37.31253 -35.14725 -33.25194 -32.40437 -31.57612 -28.15122 -26.04658 -25.08595 -23.61653 -21.17983 -20.17104 -19.54628 -17.10756 -16.32554 -16.17249 -15.27960 -15.00984 -14.67742 -14.35443 -13.97082 -13.78082 -13.47289 -12.71064 -12.48339 -12.30624 -11.96599 -11.39430 -11.36802 -11.20607 -11.09799 -10.97938 -10.57736 -10.51849 -10.36111 -10.21204 -10.14765 -9.45231 -8.82600 -7.58374 -7.46221 -6.17039 -4.61234 3.15253 3.22225 3.25856 3.85636 4.12335 4.57812 4.61943 4.69110 4.73973 4.85626 4.98155 5.18151 5.34189 5.43486 5.50070 5.59319 5.62648 5.73676 5.77445 5.83430 5.87062 5.96797 6.03999 6.15333 6.29464 6.61496 6.63729 7.17891 7.45886 7.96392 8.13685 8.36041 9.04894 9.57123 10.62654 10.81409 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.070338 B = 0.004566 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.981936 B = 6130.396008 C = 6354.053698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.548 4.548 8 H 0.067 0.933 9 C 0.553 3.447 10 O -0.582 6.582 11 N -0.769 5.769 12 C 0.131 3.869 13 C -0.122 4.122 14 C -0.119 4.119 15 H 0.081 0.919 16 C -0.117 4.117 17 C -0.156 4.156 18 C 0.059 3.941 19 O -0.383 6.383 20 C 0.062 3.938 21 H 0.268 0.732 22 H 0.379 0.621 23 H 0.048 0.952 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.243 -15.712 -2.723 17.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.086 0.914 9 C 0.357 3.643 10 O -0.465 6.465 11 N -0.425 5.425 12 C 0.005 3.995 13 C -0.160 4.160 14 C -0.138 4.138 15 H 0.099 0.901 16 C -0.155 4.155 17 C -0.194 4.194 18 C -0.018 4.018 19 O -0.302 6.302 20 C -0.015 4.015 21 H 0.079 0.921 22 H 0.210 0.790 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.944 -15.630 -2.732 16.619 hybrid contribution 1.296 0.796 0.060 1.522 sum 6.240 -14.834 -2.673 16.313 Atomic orbital electron populations 1.70037 1.07086 1.27212 1.35376 1.25710 0.94587 1.00285 0.92623 0.86366 0.80217 0.81541 0.78651 1.19822 1.20462 1.18918 1.20897 0.94079 0.89665 1.53823 0.91433 1.18235 0.87165 0.82480 0.76416 1.90595 1.14119 1.86510 1.55235 1.46140 1.08525 1.05899 1.81915 1.20927 0.94106 0.83980 1.00448 1.21775 0.98506 0.93417 1.02256 1.21734 0.97812 0.94785 0.99455 0.90053 1.21642 0.97648 0.93896 1.02263 1.22194 0.99826 0.98139 0.99214 1.22552 0.93336 0.89796 0.96144 1.87954 1.33610 1.14799 1.93835 1.22795 0.97267 0.85770 0.95628 0.92142 0.78952 0.93365 0.93455 0.91405 0.91686 0.91865 0.91429 0.91063 0.91154 0.89256 0.93440 0.93175 0.88029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.41 11.85 55.55 0.66 -22.75 16 2 C 0.09 2.48 5.49 -17.36 -0.10 2.38 16 3 Si 0.91 20.32 29.56 -169.99 -5.03 15.29 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.55 -15.71 9.54 -35.63 -0.34 -16.05 16 8 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 9 C 0.55 16.09 7.74 -12.99 -0.10 15.99 16 10 O -0.58 -19.29 15.04 5.20 0.08 -19.21 16 11 N -0.77 -17.44 5.55 -61.72 -0.34 -17.79 16 12 C 0.13 2.51 5.43 -4.04 -0.02 2.48 16 13 C -0.12 -1.68 4.81 -26.73 -0.13 -1.80 16 14 C -0.12 -1.47 2.39 -90.48 -0.22 -1.68 16 15 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 16 C -0.12 -1.18 5.32 -26.55 -0.14 -1.32 16 17 C -0.16 -1.42 6.14 -26.59 -0.16 -1.59 16 18 C 0.06 0.59 6.84 37.21 0.25 0.84 16 19 O -0.38 -5.16 10.77 -35.23 -0.38 -5.54 16 20 C 0.06 0.81 5.82 37.20 0.22 1.03 16 21 H 0.27 7.38 8.29 -40.82 -0.34 7.04 16 22 H 0.38 7.48 8.45 -40.82 -0.35 7.13 16 23 H 0.05 0.98 6.62 -51.93 -0.34 0.63 16 24 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 1.46 6.69 -51.93 -0.35 1.11 16 LS Contribution 281.08 15.07 4.24 4.24 Total: -1.00 -34.69 281.08 -6.74 -41.43 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -5.23 Total: 4.05 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -0.74 Total: 0.28 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: 0.32 Total: -40.54 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.30 Total: -24.75 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.03 Total: 15.29 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -34.69 -6.74 -41.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600166169.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.198 kcal (2) G-P(sol) polarization free energy of solvation -34.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds