Wall clock time and date at job start Mon Mar 30 2020 03:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30681 * 1 3 3 Si 1.86798 * 119.99852 * 2 1 4 4 H 1.48496 * 109.47335 * 274.98129 * 3 2 1 5 5 H 1.48504 * 109.47363 * 34.98327 * 3 2 1 6 6 H 1.48499 * 109.46888 * 154.97972 * 3 2 1 7 7 C 1.40050 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99974 * 186.15380 * 7 2 1 9 9 C 1.46376 * 119.99812 * 6.14983 * 7 2 1 10 10 O 1.21684 * 120.00278 * 353.94244 * 9 7 2 11 11 N 1.34780 * 119.99644 * 173.93742 * 9 7 2 12 12 C 1.46496 * 119.99645 * 180.02562 * 11 9 7 13 13 C 1.53005 * 109.47062 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.47200 * 180.02562 * 13 12 11 15 15 H 1.09004 * 109.51608 * 304.86851 * 14 13 12 16 16 C 1.53174 * 109.57089 * 184.71423 * 14 13 12 17 17 C 1.53179 * 109.04325 * 183.08484 * 16 14 13 18 18 C 1.53092 * 109.16413 * 56.96530 * 17 16 14 19 19 O 1.42906 * 109.42220 * 302.41139 * 18 17 16 20 20 C 1.42898 * 114.10153 * 61.14563 * 19 18 17 21 21 H 0.96999 * 119.99596 * 0.02562 * 1 2 3 22 22 H 0.96993 * 120.00132 * 0.02562 * 11 9 7 23 23 H 1.09003 * 109.47720 * 59.99895 * 12 11 9 24 24 H 1.09001 * 109.47402 * 299.99991 * 12 11 9 25 25 H 1.08990 * 109.47200 * 59.99637 * 13 12 11 26 26 H 1.09001 * 109.46686 * 300.00039 * 13 12 11 27 27 H 1.08999 * 109.54733 * 302.94785 * 16 14 13 28 28 H 1.09005 * 109.54585 * 63.12528 * 16 14 13 29 29 H 1.09001 * 109.51288 * 297.06473 * 17 16 14 30 30 H 1.09000 * 109.53118 * 176.87421 * 17 16 14 31 31 H 1.08994 * 109.48283 * 182.42024 * 18 17 16 32 32 H 1.09000 * 109.47750 * 62.39272 * 18 17 16 33 33 H 1.09003 * 109.47568 * 58.82643 * 20 19 18 34 34 H 1.09000 * 109.48245 * 178.85867 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3830 2.1072 -1.3947 5 1 1.4948 2.6200 0.8027 6 1 3.5870 1.4121 0.5922 7 6 2.0071 -1.2129 0.0005 8 1 3.0823 -1.2155 0.1008 9 6 1.2814 -2.4769 -0.1347 10 8 0.0646 -2.4828 -0.1367 11 7 1.9612 -3.6343 -0.2571 12 6 1.2350 -4.8993 -0.3930 13 6 2.2350 -6.0510 -0.5137 14 6 1.4766 -7.3722 -0.6563 15 1 0.7841 -7.4864 0.1778 16 6 2.4712 -8.5371 -0.6591 17 6 1.7070 -9.8462 -0.8796 18 6 0.9174 -9.7530 -2.1879 19 8 0.0341 -8.6311 -2.1309 20 6 0.6961 -7.3745 -1.9733 21 1 -0.4849 0.8401 -0.0004 22 1 2.9311 -3.6296 -0.2552 23 1 0.6098 -4.8655 -1.2853 24 1 0.6073 -5.0541 0.4846 25 1 2.8597 -6.0848 0.3788 26 1 2.8630 -5.8964 -1.3911 27 1 3.1942 -8.3973 -1.4627 28 1 2.9921 -8.5742 0.2977 29 1 1.0193 -10.0105 -0.0501 30 1 2.4129 -10.6747 -0.9385 31 1 0.3378 -10.6653 -2.3285 32 1 1.6087 -9.6293 -3.0216 33 1 1.3846 -7.2197 -2.8041 34 1 -0.0430 -6.5735 -1.9593 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600166169.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:58 Heat of formation + Delta-G solvation = -137.574281 kcal Electronic energy + Delta-G solvation = -15613.566334 eV Core-core repulsion = 12930.198364 eV Total energy + Delta-G solvation = -2683.367970 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.50128 -39.34680 -36.55873 -34.81426 -34.31523 -32.90127 -29.69835 -27.92656 -26.02171 -24.89500 -22.36350 -21.75244 -20.96052 -19.15331 -17.47148 -17.30294 -17.13920 -16.19915 -16.05271 -15.90803 -15.41579 -15.13253 -14.69708 -14.19107 -14.05451 -13.54859 -13.36403 -13.03440 -12.83173 -12.66586 -12.58504 -12.33706 -12.05550 -11.99984 -11.79116 -11.43540 -11.17636 -10.93349 -10.37992 -9.87740 -9.48320 -8.30319 -6.85933 1.40687 1.42110 1.58324 2.25187 2.46672 2.93482 3.12968 3.60086 3.72764 3.79424 3.92844 4.05616 4.23820 4.29893 4.38325 4.47700 4.59123 4.63647 4.77071 4.84143 4.93155 4.96916 5.08820 5.16493 5.20277 5.28172 5.32114 5.43844 5.87619 6.23696 6.26623 6.29007 6.86290 7.55914 8.48706 8.66929 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.070338 B = 0.004566 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.981936 B = 6130.396008 C = 6354.053698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.027 3.973 3 Si 1.001 2.999 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.247 1.247 7 C -0.575 4.575 8 H 0.090 0.910 9 C 0.533 3.467 10 O -0.636 6.636 11 N -0.756 5.756 12 C 0.131 3.869 13 C -0.104 4.104 14 C -0.114 4.114 15 H 0.067 0.933 16 C -0.113 4.113 17 C -0.152 4.152 18 C 0.049 3.951 19 O -0.408 6.408 20 C 0.062 3.938 21 H 0.275 0.725 22 H 0.397 0.603 23 H 0.032 0.968 24 H 0.025 0.975 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.970 -16.161 -2.912 18.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.188 4.188 3 Si 0.820 3.180 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.170 1.170 7 C -0.612 4.612 8 H 0.108 0.892 9 C 0.337 3.663 10 O -0.524 6.524 11 N -0.410 5.410 12 C 0.006 3.994 13 C -0.141 4.141 14 C -0.133 4.133 15 H 0.085 0.915 16 C -0.150 4.150 17 C -0.190 4.190 18 C -0.027 4.027 19 O -0.327 6.327 20 C -0.015 4.015 21 H 0.084 0.916 22 H 0.231 0.769 23 H 0.050 0.950 24 H 0.043 0.957 25 H 0.101 0.899 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.115 0.885 31 H 0.123 0.877 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.726 -16.138 -2.923 18.129 hybrid contribution 0.408 0.834 0.107 0.935 sum 8.134 -15.304 -2.817 17.558 Atomic orbital electron populations 1.70209 1.09688 1.28987 1.36455 1.27034 0.95508 1.05131 0.91130 0.84962 0.78912 0.74922 0.79187 1.18749 1.19795 1.16968 1.21461 0.95306 0.90252 1.54143 0.89209 1.18700 0.86819 0.84528 0.76232 1.90548 1.16394 1.87695 1.57727 1.45816 1.09384 1.05639 1.80196 1.21048 0.95185 0.84470 0.98681 1.21647 0.97222 0.91573 1.03689 1.21669 0.98083 0.95137 0.98443 0.91477 1.21634 0.97108 0.92911 1.03396 1.22182 0.99989 0.98506 0.98309 1.22832 0.93619 0.89057 0.97178 1.87919 1.35207 1.15561 1.94033 1.22704 0.96784 0.85468 0.96529 0.91557 0.76938 0.94986 0.95651 0.89903 0.90044 0.90620 0.90336 0.91822 0.88535 0.87742 0.92246 0.92076 0.90611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.46 11.85 21.84 0.26 -51.20 16 2 C 0.03 1.52 5.49 85.30 0.47 1.99 16 3 Si 1.00 41.21 29.56 68.60 2.03 43.24 16 4 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 6 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 7 C -0.58 -33.09 9.54 24.83 0.24 -32.85 16 8 H 0.09 4.59 7.85 -2.91 -0.02 4.56 16 9 C 0.53 31.82 7.74 86.36 0.67 32.49 16 10 O -0.64 -44.12 15.04 -4.30 -0.06 -44.19 16 11 N -0.76 -34.54 5.55 -467.40 -2.59 -37.14 16 12 C 0.13 5.14 5.43 86.38 0.47 5.61 16 13 C -0.10 -2.71 4.81 30.60 0.15 -2.57 16 14 C -0.11 -2.71 2.39 -10.71 -0.03 -2.73 16 15 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 16 C -0.11 -1.95 5.32 30.71 0.16 -1.79 16 17 C -0.15 -2.37 6.14 30.68 0.19 -2.19 16 18 C 0.05 0.88 6.84 72.01 0.49 1.38 16 19 O -0.41 -10.82 10.77 -148.98 -1.60 -12.43 16 20 C 0.06 1.62 5.82 72.01 0.42 2.04 16 21 H 0.27 15.47 8.29 -92.71 -0.77 14.70 16 22 H 0.40 15.21 8.45 -92.71 -0.78 14.43 16 23 H 0.03 1.36 6.62 -2.39 -0.02 1.35 16 24 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 34 H 0.08 2.32 6.69 -2.39 -0.02 2.31 16 Total: -1.00 -77.97 281.08 1.55 -76.42 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 0.30 Total: 23.91 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: 3.23 Total: 1.38 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -2.34 Total: -88.33 kcal Atomic # 8 Polarization: -54.94 SS G_CDS: -1.67 Total: -56.61 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -77.97 1.55 -76.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600166169.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.158 kcal (2) G-P(sol) polarization free energy of solvation -77.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds