Wall clock time and date at job start Mon Mar 30 2020 03:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99948 * 2 1 4 4 H 1.48506 * 109.46953 * 269.99247 * 3 2 1 5 5 H 1.48496 * 109.47305 * 29.99553 * 3 2 1 6 6 H 1.48499 * 109.47314 * 149.99972 * 3 2 1 7 7 C 1.37882 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99995 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99698 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46980 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47029 * 180.02562 * 10 9 7 12 12 C 1.50315 * 111.87126 * 46.20621 * 11 10 9 13 13 C 1.53161 * 109.42329 * 181.78967 * 12 11 10 14 14 H 1.09001 * 109.69379 * 182.06290 * 13 12 11 15 15 C 1.53206 * 109.19787 * 61.82871 * 13 12 11 16 16 O 1.43066 * 109.12958 * 296.88846 * 15 13 12 17 17 C 1.43067 * 113.67521 * 302.29289 * 16 15 13 18 18 C 1.53200 * 109.12398 * 57.71222 * 17 16 15 19 19 H 1.09000 * 109.69195 * 184.16010 * 18 17 16 20 20 C 1.47007 * 110.99703 * 170.00075 * 11 10 9 21 21 O 1.43253 * 108.96562 * 302.98553 * 13 12 11 22 22 H 0.96998 * 119.99696 * 0.02562 * 1 2 3 23 23 H 1.08988 * 109.47232 * 59.99801 * 9 7 2 24 24 H 1.09003 * 109.46946 * 299.99800 * 9 7 2 25 25 H 1.09000 * 109.47502 * 59.99321 * 10 9 7 26 26 H 1.09004 * 109.46690 * 300.00076 * 10 9 7 27 27 H 1.09005 * 109.08505 * 62.01051 * 12 11 10 28 28 H 1.08996 * 109.75275 * 301.98459 * 12 11 10 29 29 H 1.08999 * 109.52562 * 56.78445 * 15 13 12 30 30 H 1.08997 * 109.52374 * 176.91917 * 15 13 12 31 31 H 1.08995 * 109.52971 * 177.60692 * 17 16 15 32 32 H 1.08995 * 109.53079 * 297.82156 * 17 16 15 33 33 H 1.08994 * 109.51291 * 57.89752 * 20 11 10 34 34 H 1.09005 * 109.54367 * 297.77597 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5107 -4.9342 0.0012 12 6 0.3957 -4.9366 -1.0070 13 6 -0.3583 -6.2674 -0.9293 14 1 -1.1449 -6.2885 -1.6837 15 6 -0.9760 -6.4159 0.4648 16 8 0.0709 -6.4654 1.4386 17 6 1.0081 -7.5242 1.2212 18 6 1.6213 -7.3730 -0.1746 19 1 2.2817 -8.2158 -0.3789 20 6 2.4180 -6.0663 -0.2359 21 8 0.5668 -7.3399 -1.1437 22 1 -0.4849 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 2.8713 -3.6040 0.8922 26 1 2.8725 -3.6047 -0.8877 27 1 0.8173 -4.8147 -2.0048 28 1 -0.2911 -4.1163 -0.7986 29 1 -1.6237 -5.5633 0.6690 30 1 -1.5596 -7.3354 0.5086 31 1 1.7960 -7.4734 1.9727 32 1 0.4966 -8.4840 1.2924 33 1 3.1944 -6.0770 0.5290 34 1 2.8772 -5.9658 -1.2194 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619784457.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:59 Heat of formation + Delta-G solvation = -76.249615 kcal Electronic energy + Delta-G solvation = -16741.172344 eV Core-core repulsion = 14060.463612 eV Total energy + Delta-G solvation = -2680.708733 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.46196 -36.31916 -35.38600 -33.00840 -32.62939 -29.98421 -27.68374 -26.40224 -24.98068 -23.29134 -22.67854 -20.08904 -18.64974 -16.85522 -16.46053 -16.23049 -15.43806 -15.19506 -14.98553 -14.43946 -14.18710 -13.95910 -13.23400 -12.78266 -12.48359 -12.25690 -11.91115 -11.77986 -11.48817 -11.01325 -10.94578 -10.85415 -10.49795 -10.20713 -9.94650 -9.87351 -9.29624 -9.10614 -8.85828 -8.33845 -7.55240 -6.00013 -4.02004 3.32075 3.38320 3.41885 3.79971 4.04931 4.38513 4.52889 4.77990 4.96195 5.10700 5.14668 5.24745 5.36220 5.44468 5.64174 5.66759 5.72782 5.77208 5.93569 6.00593 6.15030 6.28138 6.41309 6.47277 6.93883 7.15846 7.42068 7.47637 7.54132 7.75720 7.87391 8.06464 8.43648 9.04572 9.61568 11.11418 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.049819 B = 0.006552 C = 0.006310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.897049 B = 4272.210981 C = 4436.454870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.024 3.976 10 C 0.064 3.936 11 N -0.518 5.518 12 C 0.027 3.973 13 C 0.052 3.948 14 H 0.112 0.888 15 C 0.043 3.957 16 O -0.342 6.342 17 C 0.043 3.957 18 C 0.054 3.946 19 H 0.107 0.893 20 C 0.029 3.971 21 O -0.375 6.375 22 H 0.260 0.740 23 H 0.017 0.983 24 H 0.026 0.974 25 H 0.064 0.936 26 H 0.016 0.984 27 H 0.038 0.962 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.047 0.953 31 H 0.098 0.902 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.373 -14.676 -0.414 14.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.062 4.062 11 N -0.243 5.243 12 C -0.101 4.101 13 C -0.006 4.006 14 H 0.130 0.870 15 C -0.034 4.034 16 O -0.259 6.259 17 C -0.034 4.034 18 C -0.004 4.004 19 H 0.125 0.875 20 C -0.100 4.100 21 O -0.295 6.295 22 H 0.070 0.930 23 H 0.035 0.965 24 H 0.045 0.955 25 H 0.082 0.918 26 H 0.034 0.966 27 H 0.056 0.944 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.065 0.935 31 H 0.116 0.884 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 0.019 -14.605 0.069 14.605 hybrid contribution 0.909 1.084 -0.937 1.697 sum 0.928 -13.521 -0.868 13.580 Atomic orbital electron populations 1.69964 1.06008 1.26576 1.50747 1.24989 0.94847 0.99173 0.95286 0.86589 0.79870 0.83472 0.78030 1.20745 1.21175 1.19888 1.21193 0.93003 0.91054 1.50777 0.92806 1.19182 0.94077 0.90383 0.97691 1.22325 0.96912 0.88203 0.98785 1.63100 1.10823 1.03005 1.47411 1.23274 0.95542 0.97235 0.94005 1.23088 0.92150 0.87067 0.98257 0.86999 1.23029 0.90080 1.01762 0.88536 1.88228 1.37980 1.51321 1.48420 1.22985 0.93503 0.90417 0.96522 1.22989 0.89366 0.98190 0.89884 0.87483 1.22635 0.95562 0.91750 1.00078 1.88161 1.38752 1.50701 1.51843 0.93008 0.96478 0.95528 0.91792 0.96587 0.94414 0.88038 0.87871 0.93491 0.88423 0.93492 0.90125 0.94871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.86 13.29 55.43 0.74 -26.13 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.63 4.29 -27.88 -0.12 0.51 16 10 C 0.06 1.41 5.26 -3.83 -0.02 1.39 16 11 N -0.52 -9.82 3.38 -231.31 -0.78 -10.60 16 12 C 0.03 0.49 4.50 -1.82 -0.01 0.48 16 13 C 0.05 0.78 4.04 -26.54 -0.11 0.67 16 14 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 15 C 0.04 0.62 6.45 37.26 0.24 0.87 16 16 O -0.34 -5.65 9.32 -48.77 -0.45 -6.10 16 17 C 0.04 0.57 6.44 37.26 0.24 0.81 16 18 C 0.05 0.73 3.98 -26.54 -0.11 0.63 16 19 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 20 C 0.03 0.45 5.07 -3.68 -0.02 0.43 16 21 O -0.38 -5.74 10.60 -48.77 -0.52 -6.25 16 22 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 23 H 0.02 0.46 6.33 -51.94 -0.33 0.13 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 26 H 0.02 0.35 8.08 -51.93 -0.42 -0.07 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.10 1.99 6.25 -51.93 -0.32 1.67 16 29 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 268.31 15.07 4.04 4.04 Total: -1.00 -31.55 268.31 -7.57 -39.12 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -5.26 Total: -2.99 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -0.31 Total: -7.88 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: -0.05 Total: -36.73 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -0.97 Total: -12.36 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.55 -7.57 -39.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619784457.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.131 kcal (2) G-P(sol) polarization free energy of solvation -31.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds