Wall clock time and date at job start Mon Mar 30 2020 03:14:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86801 * 119.99948 * 2 1
4 4 H 1.48506 * 109.46953 * 269.99247 * 3 2 1
5 5 H 1.48496 * 109.47305 * 29.99553 * 3 2 1
6 6 H 1.48499 * 109.47314 * 149.99972 * 3 2 1
7 7 C 1.37882 * 119.99953 * 179.97438 * 2 1 3
8 8 H 1.07993 * 119.99995 * 180.02562 * 7 2 1
9 9 C 1.50702 * 119.99698 * 0.02562 * 7 2 1
10 10 C 1.53002 * 109.46980 * 180.02562 * 9 7 2
11 11 N 1.46895 * 109.47029 * 180.02562 * 10 9 7
12 12 C 1.50315 * 111.87126 * 46.20621 * 11 10 9
13 13 C 1.53161 * 109.42329 * 181.78967 * 12 11 10
14 14 H 1.09001 * 109.69379 * 182.06290 * 13 12 11
15 15 C 1.53206 * 109.19787 * 61.82871 * 13 12 11
16 16 O 1.43066 * 109.12958 * 296.88846 * 15 13 12
17 17 C 1.43067 * 113.67521 * 302.29289 * 16 15 13
18 18 C 1.53200 * 109.12398 * 57.71222 * 17 16 15
19 19 H 1.09000 * 109.69195 * 184.16010 * 18 17 16
20 20 C 1.47007 * 110.99703 * 170.00075 * 11 10 9
21 21 O 1.43253 * 108.96562 * 302.98553 * 13 12 11
22 22 H 0.96998 * 119.99696 * 0.02562 * 1 2 3
23 23 H 1.08988 * 109.47232 * 59.99801 * 9 7 2
24 24 H 1.09003 * 109.46946 * 299.99800 * 9 7 2
25 25 H 1.09000 * 109.47502 * 59.99321 * 10 9 7
26 26 H 1.09004 * 109.46690 * 300.00076 * 10 9 7
27 27 H 1.09005 * 109.08505 * 62.01051 * 12 11 10
28 28 H 1.08996 * 109.75275 * 301.98459 * 12 11 10
29 29 H 1.08999 * 109.52562 * 56.78445 * 15 13 12
30 30 H 1.08997 * 109.52374 * 176.91917 * 15 13 12
31 31 H 1.08995 * 109.52971 * 177.60692 * 17 16 15
32 32 H 1.08995 * 109.53079 * 297.82156 * 17 16 15
33 33 H 1.08994 * 109.51291 * 57.89752 * 20 11 10
34 34 H 1.09005 * 109.54367 * 297.77597 * 20 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4968 2.0463 -1.4001
5 1 1.4466 2.6527 0.6999
6 1 3.5467 1.4403 0.7000
7 6 2.0046 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2510 -2.4992 0.0005
10 6 2.2452 -3.6621 0.0018
11 7 1.5107 -4.9342 0.0012
12 6 0.3957 -4.9366 -1.0070
13 6 -0.3583 -6.2674 -0.9293
14 1 -1.1449 -6.2885 -1.6837
15 6 -0.9760 -6.4159 0.4648
16 8 0.0709 -6.4654 1.4386
17 6 1.0081 -7.5242 1.2212
18 6 1.6213 -7.3730 -0.1746
19 1 2.2817 -8.2158 -0.3789
20 6 2.4180 -6.0663 -0.2359
21 8 0.5668 -7.3399 -1.1437
22 1 -0.4849 0.8401 -0.0004
23 1 0.6247 -2.5571 -0.8896
24 1 0.6240 -2.5567 0.8903
25 1 2.8713 -3.6040 0.8922
26 1 2.8725 -3.6047 -0.8877
27 1 0.8173 -4.8147 -2.0048
28 1 -0.2911 -4.1163 -0.7986
29 1 -1.6237 -5.5633 0.6690
30 1 -1.5596 -7.3354 0.5086
31 1 1.7960 -7.4734 1.9727
32 1 0.4966 -8.4840 1.2924
33 1 3.1944 -6.0770 0.5290
34 1 2.8772 -5.9658 -1.2194
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000619784457.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:14:59
Heat of formation + Delta-G solvation = -76.249615 kcal
Electronic energy + Delta-G solvation = -16741.172344 eV
Core-core repulsion = 14060.463612 eV
Total energy + Delta-G solvation = -2680.708733 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 227.131 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-40.46196 -36.31916 -35.38600 -33.00840 -32.62939 -29.98421 -27.68374 -26.40224
-24.98068 -23.29134 -22.67854 -20.08904 -18.64974 -16.85522 -16.46053 -16.23049
-15.43806 -15.19506 -14.98553 -14.43946 -14.18710 -13.95910 -13.23400 -12.78266
-12.48359 -12.25690 -11.91115 -11.77986 -11.48817 -11.01325 -10.94578 -10.85415
-10.49795 -10.20713 -9.94650 -9.87351 -9.29624 -9.10614 -8.85828 -8.33845
-7.55240 -6.00013 -4.02004 3.32075 3.38320 3.41885 3.79971 4.04931
4.38513 4.52889 4.77990 4.96195 5.10700 5.14668 5.24745 5.36220
5.44468 5.64174 5.66759 5.72782 5.77208 5.93569 6.00593 6.15030
6.28138 6.41309 6.47277 6.93883 7.15846 7.42068 7.47637 7.54132
7.75720 7.87391 8.06464 8.43648 9.04572 9.61568 11.11418
Molecular weight = 227.13amu
Principal moments of inertia in cm(-1)
A = 0.049819 B = 0.006552 C = 0.006310
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 561.897049 B = 4272.210981 C = 4436.454870
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.894 5.894
2 C 0.058 3.942
3 Si 0.892 3.108
4 H -0.281 1.281
5 H -0.286 1.286
6 H -0.274 1.274
7 C -0.521 4.521
8 H 0.054 0.946
9 C 0.024 3.976
10 C 0.064 3.936
11 N -0.518 5.518
12 C 0.027 3.973
13 C 0.052 3.948
14 H 0.112 0.888
15 C 0.043 3.957
16 O -0.342 6.342
17 C 0.043 3.957
18 C 0.054 3.946
19 H 0.107 0.893
20 C 0.029 3.971
21 O -0.375 6.375
22 H 0.260 0.740
23 H 0.017 0.983
24 H 0.026 0.974
25 H 0.064 0.936
26 H 0.016 0.984
27 H 0.038 0.962
28 H 0.101 0.899
29 H 0.103 0.897
30 H 0.047 0.953
31 H 0.098 0.902
32 H 0.047 0.953
33 H 0.080 0.920
34 H 0.033 0.967
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.373 -14.676 -0.414 14.687
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.533 5.533
2 C -0.143 4.143
3 Si 0.720 3.280
4 H -0.207 1.207
5 H -0.212 1.212
6 H -0.199 1.199
7 C -0.560 4.560
8 H 0.072 0.928
9 C -0.013 4.013
10 C -0.062 4.062
11 N -0.243 5.243
12 C -0.101 4.101
13 C -0.006 4.006
14 H 0.130 0.870
15 C -0.034 4.034
16 O -0.259 6.259
17 C -0.034 4.034
18 C -0.004 4.004
19 H 0.125 0.875
20 C -0.100 4.100
21 O -0.295 6.295
22 H 0.070 0.930
23 H 0.035 0.965
24 H 0.045 0.955
25 H 0.082 0.918
26 H 0.034 0.966
27 H 0.056 0.944
28 H 0.120 0.880
29 H 0.121 0.879
30 H 0.065 0.935
31 H 0.116 0.884
32 H 0.065 0.935
33 H 0.099 0.901
34 H 0.051 0.949
Dipole moment (debyes) X Y Z Total
from point charges 0.019 -14.605 0.069 14.605
hybrid contribution 0.909 1.084 -0.937 1.697
sum 0.928 -13.521 -0.868 13.580
Atomic orbital electron populations
1.69964 1.06008 1.26576 1.50747 1.24989 0.94847 0.99173 0.95286
0.86589 0.79870 0.83472 0.78030 1.20745 1.21175 1.19888 1.21193
0.93003 0.91054 1.50777 0.92806 1.19182 0.94077 0.90383 0.97691
1.22325 0.96912 0.88203 0.98785 1.63100 1.10823 1.03005 1.47411
1.23274 0.95542 0.97235 0.94005 1.23088 0.92150 0.87067 0.98257
0.86999 1.23029 0.90080 1.01762 0.88536 1.88228 1.37980 1.51321
1.48420 1.22985 0.93503 0.90417 0.96522 1.22989 0.89366 0.98190
0.89884 0.87483 1.22635 0.95562 0.91750 1.00078 1.88161 1.38752
1.50701 1.51843 0.93008 0.96478 0.95528 0.91792 0.96587 0.94414
0.88038 0.87871 0.93491 0.88423 0.93492 0.90125 0.94871
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.86 13.29 55.43 0.74 -26.13 16
2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16
3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16
4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16
7 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16
8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16
9 C 0.02 0.63 4.29 -27.88 -0.12 0.51 16
10 C 0.06 1.41 5.26 -3.83 -0.02 1.39 16
11 N -0.52 -9.82 3.38 -231.31 -0.78 -10.60 16
12 C 0.03 0.49 4.50 -1.82 -0.01 0.48 16
13 C 0.05 0.78 4.04 -26.54 -0.11 0.67 16
14 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16
15 C 0.04 0.62 6.45 37.26 0.24 0.87 16
16 O -0.34 -5.65 9.32 -48.77 -0.45 -6.10 16
17 C 0.04 0.57 6.44 37.26 0.24 0.81 16
18 C 0.05 0.73 3.98 -26.54 -0.11 0.63 16
19 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16
20 C 0.03 0.45 5.07 -3.68 -0.02 0.43 16
21 O -0.38 -5.74 10.60 -48.77 -0.52 -6.25 16
22 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16
23 H 0.02 0.46 6.33 -51.94 -0.33 0.13 16
24 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16
25 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16
26 H 0.02 0.35 8.08 -51.93 -0.42 -0.07 16
27 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16
28 H 0.10 1.99 6.25 -51.93 -0.32 1.67 16
29 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16
30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16
31 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16
32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16
33 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16
34 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16
LS Contribution 268.31 15.07 4.04 4.04
Total: -1.00 -31.55 268.31 -7.57 -39.12
By element:
Atomic # 1 Polarization: 2.28 SS G_CDS: -5.26 Total: -2.99 kcal
Atomic # 6 Polarization: -7.57 SS G_CDS: -0.31 Total: -7.88 kcal
Atomic # 7 Polarization: -36.68 SS G_CDS: -0.05 Total: -36.73 kcal
Atomic # 8 Polarization: -11.38 SS G_CDS: -0.97 Total: -12.36 kcal
Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal
Total LS contribution 4.04 Total: 4.04 kcal
Total: -31.55 -7.57 -39.12 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000619784457.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -37.131 kcal
(2) G-P(sol) polarization free energy of solvation -31.548 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.680 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.118 kcal
(6) G-S(sol) free energy of system = (1) + (5) -76.250 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds