Wall clock time and date at job start Mon Mar 30 2020 03:14:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86801 * 119.99948 * 2 1
4 4 H 1.48506 * 109.46953 * 269.99247 * 3 2 1
5 5 H 1.48496 * 109.47305 * 29.99553 * 3 2 1
6 6 H 1.48499 * 109.47314 * 149.99972 * 3 2 1
7 7 C 1.37882 * 119.99953 * 179.97438 * 2 1 3
8 8 H 1.07993 * 119.99995 * 180.02562 * 7 2 1
9 9 C 1.50702 * 119.99698 * 0.02562 * 7 2 1
10 10 C 1.53002 * 109.46980 * 180.02562 * 9 7 2
11 11 N 1.46895 * 109.47029 * 180.02562 * 10 9 7
12 12 C 1.50315 * 111.87126 * 46.20621 * 11 10 9
13 13 C 1.53161 * 109.42329 * 181.78967 * 12 11 10
14 14 H 1.09001 * 109.69379 * 182.06290 * 13 12 11
15 15 C 1.53206 * 109.19787 * 61.82871 * 13 12 11
16 16 O 1.43066 * 109.12958 * 296.88846 * 15 13 12
17 17 C 1.43067 * 113.67521 * 302.29289 * 16 15 13
18 18 C 1.53200 * 109.12398 * 57.71222 * 17 16 15
19 19 H 1.09000 * 109.69195 * 184.16010 * 18 17 16
20 20 C 1.47007 * 110.99703 * 170.00075 * 11 10 9
21 21 O 1.43253 * 108.96562 * 302.98553 * 13 12 11
22 22 H 0.96998 * 119.99696 * 0.02562 * 1 2 3
23 23 H 1.08988 * 109.47232 * 59.99801 * 9 7 2
24 24 H 1.09003 * 109.46946 * 299.99800 * 9 7 2
25 25 H 1.09000 * 109.47502 * 59.99321 * 10 9 7
26 26 H 1.09004 * 109.46690 * 300.00076 * 10 9 7
27 27 H 1.09005 * 109.08505 * 62.01051 * 12 11 10
28 28 H 1.08996 * 109.75275 * 301.98459 * 12 11 10
29 29 H 1.08999 * 109.52562 * 56.78445 * 15 13 12
30 30 H 1.08997 * 109.52374 * 176.91917 * 15 13 12
31 31 H 1.08995 * 109.52971 * 177.60692 * 17 16 15
32 32 H 1.08995 * 109.53079 * 297.82156 * 17 16 15
33 33 H 1.08994 * 109.51291 * 57.89752 * 20 11 10
34 34 H 1.09005 * 109.54367 * 297.77597 * 20 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4968 2.0463 -1.4001
5 1 1.4466 2.6527 0.6999
6 1 3.5467 1.4403 0.7000
7 6 2.0046 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2510 -2.4992 0.0005
10 6 2.2452 -3.6621 0.0018
11 7 1.5107 -4.9342 0.0012
12 6 0.3957 -4.9366 -1.0070
13 6 -0.3583 -6.2674 -0.9293
14 1 -1.1449 -6.2885 -1.6837
15 6 -0.9760 -6.4159 0.4648
16 8 0.0709 -6.4654 1.4386
17 6 1.0081 -7.5242 1.2212
18 6 1.6213 -7.3730 -0.1746
19 1 2.2817 -8.2158 -0.3789
20 6 2.4180 -6.0663 -0.2359
21 8 0.5668 -7.3399 -1.1437
22 1 -0.4849 0.8401 -0.0004
23 1 0.6247 -2.5571 -0.8896
24 1 0.6240 -2.5567 0.8903
25 1 2.8713 -3.6040 0.8922
26 1 2.8725 -3.6047 -0.8877
27 1 0.8173 -4.8147 -2.0048
28 1 -0.2911 -4.1163 -0.7986
29 1 -1.6237 -5.5633 0.6690
30 1 -1.5596 -7.3354 0.5086
31 1 1.7960 -7.4734 1.9727
32 1 0.4966 -8.4840 1.2924
33 1 3.1944 -6.0770 0.5290
34 1 2.8772 -5.9658 -1.2194
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000619784457.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:14:59
Heat of formation + Delta-G solvation = -98.326384 kcal
Electronic energy + Delta-G solvation = -16742.129665 eV
Core-core repulsion = 14060.463612 eV
Total energy + Delta-G solvation = -2681.666053 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 227.131 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-41.65881 -37.76365 -36.70400 -35.00855 -33.87976 -31.82515 -29.11991 -27.64933
-26.70021 -24.79059 -24.06713 -21.89234 -19.86002 -18.68202 -17.77451 -17.60513
-16.69342 -16.65560 -16.32557 -16.18446 -15.60249 -15.39663 -14.72698 -14.29990
-14.12683 -13.91972 -13.30381 -13.12719 -12.91751 -12.87228 -12.61834 -12.36827
-12.14207 -11.92417 -11.45885 -11.29578 -11.22870 -10.91036 -10.55713 -10.07273
-9.04758 -8.21620 -6.32962 1.38942 1.40541 1.51759 2.38747 2.65527
2.87527 3.11543 3.15207 3.66362 3.80986 3.93220 4.02344 4.07605
4.36734 4.38614 4.47021 4.57078 4.65402 4.65956 4.70084 4.78563
4.79187 4.85021 5.01105 5.06569 5.42444 5.62503 5.75627 5.96610
6.02399 6.20960 6.29107 6.36004 6.83009 7.35948 8.90278
Molecular weight = 227.13amu
Principal moments of inertia in cm(-1)
A = 0.049819 B = 0.006552 C = 0.006310
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 561.897049 B = 4272.210981 C = 4436.454870
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.929 5.929
2 C 0.003 3.997
3 Si 0.966 3.034
4 H -0.272 1.272
5 H -0.280 1.280
6 H -0.264 1.264
7 C -0.548 4.548
8 H 0.058 0.942
9 C 0.036 3.964
10 C 0.080 3.920
11 N -0.526 5.526
12 C 0.028 3.972
13 C 0.059 3.941
14 H 0.136 0.864
15 C 0.043 3.957
16 O -0.375 6.375
17 C 0.040 3.960
18 C 0.054 3.946
19 H 0.144 0.856
20 C 0.025 3.975
21 O -0.381 6.381
22 H 0.264 0.736
23 H -0.002 1.002
24 H -0.007 1.007
25 H 0.064 0.936
26 H 0.014 0.986
27 H 0.027 0.973
28 H 0.073 0.927
29 H 0.095 0.905
30 H 0.074 0.926
31 H 0.111 0.889
32 H 0.069 0.931
33 H 0.095 0.905
34 H 0.029 0.971
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.304 -15.738 -0.412 15.797
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.569 5.569
2 C -0.195 4.195
3 Si 0.791 3.209
4 H -0.197 1.197
5 H -0.206 1.206
6 H -0.188 1.188
7 C -0.586 4.586
8 H 0.076 0.924
9 C -0.001 4.001
10 C -0.048 4.048
11 N -0.251 5.251
12 C -0.100 4.100
13 C 0.001 3.999
14 H 0.154 0.846
15 C -0.034 4.034
16 O -0.294 6.294
17 C -0.037 4.037
18 C -0.004 4.004
19 H 0.161 0.839
20 C -0.104 4.104
21 O -0.300 6.300
22 H 0.073 0.927
23 H 0.016 0.984
24 H 0.011 0.989
25 H 0.082 0.918
26 H 0.032 0.968
27 H 0.045 0.955
28 H 0.092 0.908
29 H 0.113 0.887
30 H 0.092 0.908
31 H 0.129 0.871
32 H 0.087 0.913
33 H 0.113 0.887
34 H 0.047 0.953
Dipole moment (debyes) X Y Z Total
from point charges 0.958 -15.692 0.068 15.722
hybrid contribution 0.609 1.372 -0.933 1.767
sum 1.567 -14.321 -0.865 14.432
Atomic orbital electron populations
1.70097 1.07731 1.27803 1.51270 1.25948 0.95791 1.03252 0.94533
0.85432 0.78659 0.78362 0.78490 1.19746 1.20558 1.18826 1.21623
0.93479 0.92382 1.51140 0.92388 1.18960 0.94158 0.91920 0.95060
1.21986 0.95699 0.88505 0.98586 1.63046 1.11405 1.02589 1.48063
1.23240 0.95088 0.98650 0.93024 1.23106 0.92183 0.85070 0.99564
0.84645 1.23082 0.89907 1.02757 0.87697 1.88177 1.38986 1.52914
1.49275 1.23197 0.93526 0.90501 0.96515 1.23218 0.89199 0.97900
0.90041 0.83870 1.22806 0.95734 0.91480 1.00338 1.88160 1.39081
1.50192 1.52551 0.92707 0.98399 0.98883 0.91797 0.96828 0.95514
0.90824 0.88712 0.90832 0.87141 0.91267 0.88665 0.95264
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16
2 C 0.00 0.17 5.46 84.66 0.46 0.63 16
3 Si 0.97 44.80 29.54 68.60 2.03 46.82 16
4 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16
5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16
6 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16
7 C -0.55 -31.98 9.11 25.60 0.23 -31.74 16
8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16
9 C 0.04 1.98 4.29 29.85 0.13 2.11 16
10 C 0.08 3.55 5.26 86.30 0.45 4.01 16
11 N -0.53 -19.99 3.38 -885.72 -2.99 -22.98 16
12 C 0.03 1.02 4.50 85.69 0.39 1.40 16
13 C 0.06 1.68 4.04 30.72 0.12 1.80 16
14 H 0.14 3.18 8.14 -2.39 -0.02 3.16 16
15 C 0.04 1.18 6.45 72.05 0.46 1.64 16
16 O -0.38 -11.91 9.32 -136.04 -1.27 -13.18 16
17 C 0.04 0.93 6.44 72.05 0.46 1.40 16
18 C 0.05 1.31 3.98 30.72 0.12 1.44 16
19 H 0.14 2.48 8.14 -2.39 -0.02 2.46 16
20 C 0.02 0.74 5.07 86.34 0.44 1.18 16
21 O -0.38 -10.67 10.60 -136.04 -1.44 -12.11 16
22 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16
23 H 0.00 -0.13 6.33 -2.39 -0.02 -0.14 16
24 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16
25 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16
26 H 0.01 0.60 8.08 -2.39 -0.02 0.58 16
27 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16
28 H 0.07 3.08 6.25 -2.39 -0.01 3.06 16
29 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16
30 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16
31 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16
32 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16
33 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16
34 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16
Total: -1.00 -68.33 268.31 0.95 -67.38
By element:
Atomic # 1 Polarization: 5.90 SS G_CDS: 1.06 Total: 6.97 kcal
Atomic # 6 Polarization: -19.41 SS G_CDS: 3.28 Total: -16.13 kcal
Atomic # 7 Polarization: -77.04 SS G_CDS: -2.71 Total: -79.75 kcal
Atomic # 8 Polarization: -22.58 SS G_CDS: -2.71 Total: -25.29 kcal
Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal
Total: -68.33 0.95 -67.38 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000619784457.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -30.943 kcal
(2) G-P(sol) polarization free energy of solvation -68.330 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.272 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.946 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.383 kcal
(6) G-S(sol) free energy of system = (1) + (5) -98.326 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds