Wall clock time and date at job start Mon Mar 30 2020 03:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99948 * 2 1 4 4 H 1.48506 * 109.46953 * 269.99247 * 3 2 1 5 5 H 1.48496 * 109.47305 * 29.99553 * 3 2 1 6 6 H 1.48499 * 109.47314 * 149.99972 * 3 2 1 7 7 C 1.37882 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99995 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99698 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46980 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47029 * 180.02562 * 10 9 7 12 12 C 1.50315 * 111.87126 * 46.20621 * 11 10 9 13 13 C 1.53161 * 109.42329 * 181.78967 * 12 11 10 14 14 H 1.09001 * 109.69379 * 182.06290 * 13 12 11 15 15 C 1.53206 * 109.19787 * 61.82871 * 13 12 11 16 16 O 1.43066 * 109.12958 * 296.88846 * 15 13 12 17 17 C 1.43067 * 113.67521 * 302.29289 * 16 15 13 18 18 C 1.53200 * 109.12398 * 57.71222 * 17 16 15 19 19 H 1.09000 * 109.69195 * 184.16010 * 18 17 16 20 20 C 1.47007 * 110.99703 * 170.00075 * 11 10 9 21 21 O 1.43253 * 108.96562 * 302.98553 * 13 12 11 22 22 H 0.96998 * 119.99696 * 0.02562 * 1 2 3 23 23 H 1.08988 * 109.47232 * 59.99801 * 9 7 2 24 24 H 1.09003 * 109.46946 * 299.99800 * 9 7 2 25 25 H 1.09000 * 109.47502 * 59.99321 * 10 9 7 26 26 H 1.09004 * 109.46690 * 300.00076 * 10 9 7 27 27 H 1.09005 * 109.08505 * 62.01051 * 12 11 10 28 28 H 1.08996 * 109.75275 * 301.98459 * 12 11 10 29 29 H 1.08999 * 109.52562 * 56.78445 * 15 13 12 30 30 H 1.08997 * 109.52374 * 176.91917 * 15 13 12 31 31 H 1.08995 * 109.52971 * 177.60692 * 17 16 15 32 32 H 1.08995 * 109.53079 * 297.82156 * 17 16 15 33 33 H 1.08994 * 109.51291 * 57.89752 * 20 11 10 34 34 H 1.09005 * 109.54367 * 297.77597 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5107 -4.9342 0.0012 12 6 0.3957 -4.9366 -1.0070 13 6 -0.3583 -6.2674 -0.9293 14 1 -1.1449 -6.2885 -1.6837 15 6 -0.9760 -6.4159 0.4648 16 8 0.0709 -6.4654 1.4386 17 6 1.0081 -7.5242 1.2212 18 6 1.6213 -7.3730 -0.1746 19 1 2.2817 -8.2158 -0.3789 20 6 2.4180 -6.0663 -0.2359 21 8 0.5668 -7.3399 -1.1437 22 1 -0.4849 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 2.8713 -3.6040 0.8922 26 1 2.8725 -3.6047 -0.8877 27 1 0.8173 -4.8147 -2.0048 28 1 -0.2911 -4.1163 -0.7986 29 1 -1.6237 -5.5633 0.6690 30 1 -1.5596 -7.3354 0.5086 31 1 1.7960 -7.4734 1.9727 32 1 0.4966 -8.4840 1.2924 33 1 3.1944 -6.0770 0.5290 34 1 2.8772 -5.9658 -1.2194 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619784457.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:59 Heat of formation + Delta-G solvation = -98.326384 kcal Electronic energy + Delta-G solvation = -16742.129665 eV Core-core repulsion = 14060.463612 eV Total energy + Delta-G solvation = -2681.666053 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.65881 -37.76365 -36.70400 -35.00855 -33.87976 -31.82515 -29.11991 -27.64933 -26.70021 -24.79059 -24.06713 -21.89234 -19.86002 -18.68202 -17.77451 -17.60513 -16.69342 -16.65560 -16.32557 -16.18446 -15.60249 -15.39663 -14.72698 -14.29990 -14.12683 -13.91972 -13.30381 -13.12719 -12.91751 -12.87228 -12.61834 -12.36827 -12.14207 -11.92417 -11.45885 -11.29578 -11.22870 -10.91036 -10.55713 -10.07273 -9.04758 -8.21620 -6.32962 1.38942 1.40541 1.51759 2.38747 2.65527 2.87527 3.11543 3.15207 3.66362 3.80986 3.93220 4.02344 4.07605 4.36734 4.38614 4.47021 4.57078 4.65402 4.65956 4.70084 4.78563 4.79187 4.85021 5.01105 5.06569 5.42444 5.62503 5.75627 5.96610 6.02399 6.20960 6.29107 6.36004 6.83009 7.35948 8.90278 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.049819 B = 0.006552 C = 0.006310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.897049 B = 4272.210981 C = 4436.454870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.036 3.964 10 C 0.080 3.920 11 N -0.526 5.526 12 C 0.028 3.972 13 C 0.059 3.941 14 H 0.136 0.864 15 C 0.043 3.957 16 O -0.375 6.375 17 C 0.040 3.960 18 C 0.054 3.946 19 H 0.144 0.856 20 C 0.025 3.975 21 O -0.381 6.381 22 H 0.264 0.736 23 H -0.002 1.002 24 H -0.007 1.007 25 H 0.064 0.936 26 H 0.014 0.986 27 H 0.027 0.973 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.304 -15.738 -0.412 15.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.586 4.586 8 H 0.076 0.924 9 C -0.001 4.001 10 C -0.048 4.048 11 N -0.251 5.251 12 C -0.100 4.100 13 C 0.001 3.999 14 H 0.154 0.846 15 C -0.034 4.034 16 O -0.294 6.294 17 C -0.037 4.037 18 C -0.004 4.004 19 H 0.161 0.839 20 C -0.104 4.104 21 O -0.300 6.300 22 H 0.073 0.927 23 H 0.016 0.984 24 H 0.011 0.989 25 H 0.082 0.918 26 H 0.032 0.968 27 H 0.045 0.955 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.092 0.908 31 H 0.129 0.871 32 H 0.087 0.913 33 H 0.113 0.887 34 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 0.958 -15.692 0.068 15.722 hybrid contribution 0.609 1.372 -0.933 1.767 sum 1.567 -14.321 -0.865 14.432 Atomic orbital electron populations 1.70097 1.07731 1.27803 1.51270 1.25948 0.95791 1.03252 0.94533 0.85432 0.78659 0.78362 0.78490 1.19746 1.20558 1.18826 1.21623 0.93479 0.92382 1.51140 0.92388 1.18960 0.94158 0.91920 0.95060 1.21986 0.95699 0.88505 0.98586 1.63046 1.11405 1.02589 1.48063 1.23240 0.95088 0.98650 0.93024 1.23106 0.92183 0.85070 0.99564 0.84645 1.23082 0.89907 1.02757 0.87697 1.88177 1.38986 1.52914 1.49275 1.23197 0.93526 0.90501 0.96515 1.23218 0.89199 0.97900 0.90041 0.83870 1.22806 0.95734 0.91480 1.00338 1.88160 1.39081 1.50192 1.52551 0.92707 0.98399 0.98883 0.91797 0.96828 0.95514 0.90824 0.88712 0.90832 0.87141 0.91267 0.88665 0.95264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 2 C 0.00 0.17 5.46 84.66 0.46 0.63 16 3 Si 0.97 44.80 29.54 68.60 2.03 46.82 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.55 -31.98 9.11 25.60 0.23 -31.74 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.04 1.98 4.29 29.85 0.13 2.11 16 10 C 0.08 3.55 5.26 86.30 0.45 4.01 16 11 N -0.53 -19.99 3.38 -885.72 -2.99 -22.98 16 12 C 0.03 1.02 4.50 85.69 0.39 1.40 16 13 C 0.06 1.68 4.04 30.72 0.12 1.80 16 14 H 0.14 3.18 8.14 -2.39 -0.02 3.16 16 15 C 0.04 1.18 6.45 72.05 0.46 1.64 16 16 O -0.38 -11.91 9.32 -136.04 -1.27 -13.18 16 17 C 0.04 0.93 6.44 72.05 0.46 1.40 16 18 C 0.05 1.31 3.98 30.72 0.12 1.44 16 19 H 0.14 2.48 8.14 -2.39 -0.02 2.46 16 20 C 0.02 0.74 5.07 86.34 0.44 1.18 16 21 O -0.38 -10.67 10.60 -136.04 -1.44 -12.11 16 22 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 23 H 0.00 -0.13 6.33 -2.39 -0.02 -0.14 16 24 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 25 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 26 H 0.01 0.60 8.08 -2.39 -0.02 0.58 16 27 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.07 3.08 6.25 -2.39 -0.01 3.06 16 29 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 30 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 33 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 Total: -1.00 -68.33 268.31 0.95 -67.38 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: 1.06 Total: 6.97 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: 3.28 Total: -16.13 kcal Atomic # 7 Polarization: -77.04 SS G_CDS: -2.71 Total: -79.75 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -2.71 Total: -25.29 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -68.33 0.95 -67.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619784457.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.943 kcal (2) G-P(sol) polarization free energy of solvation -68.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds