Wall clock time and date at job start Mon Mar 30 2020 03:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47088 * 2 1 4 4 C 1.53007 * 109.46878 * 240.00164 * 2 1 3 5 5 H 1.09002 * 110.27297 * 59.29979 * 4 2 1 6 6 C 1.54946 * 110.30933 * 181.38875 * 4 2 1 7 7 C 1.55409 * 100.89317 * 155.28523 * 6 4 2 8 8 H 1.09001 * 110.93108 * 84.25290 * 7 6 4 9 9 N 1.46499 * 110.88501 * 207.75441 * 7 6 4 10 10 C 1.34773 * 120.00242 * 199.37486 * 9 7 6 11 11 O 1.21690 * 120.00135 * 0.02562 * 10 9 7 12 12 C 1.46375 * 120.00301 * 179.97438 * 10 9 7 13 13 H 1.08000 * 119.99839 * 353.94805 * 12 10 9 14 14 C 1.40044 * 120.00002 * 173.93820 * 12 10 9 15 15 N 1.30669 * 120.00219 * 6.15889 * 14 12 10 16 16 Si 1.86806 * 119.99933 * 186.15506 * 14 12 10 17 17 H 1.48498 * 109.46915 * 94.98498 * 16 14 12 18 18 H 1.48494 * 109.47264 * 214.98562 * 16 14 12 19 19 H 1.48502 * 109.47158 * 334.98666 * 16 14 12 20 20 C 1.54382 * 102.31219 * 325.99333 * 7 6 4 21 21 O 1.43238 * 107.58825 * 21.28083 * 20 7 6 22 22 H 1.09002 * 109.47478 * 59.99695 * 1 2 3 23 23 H 1.09003 * 109.47180 * 300.00191 * 1 2 3 24 24 H 1.08999 * 109.47170 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47490 * 120.00313 * 2 1 3 26 26 H 1.09002 * 109.47164 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.46937 * 299.99993 * 3 2 1 28 28 H 1.08994 * 109.47162 * 60.00026 * 3 2 1 29 29 H 1.08997 * 111.12685 * 273.28380 * 6 4 2 30 30 H 1.09006 * 111.12218 * 37.43990 * 6 4 2 31 31 H 0.97006 * 119.99637 * 19.37698 * 9 7 6 32 32 H 0.97001 * 120.00328 * 179.97438 * 15 14 12 33 33 H 1.09001 * 109.83103 * 261.77409 * 20 7 6 34 34 H 1.08999 * 109.90829 * 140.83985 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 1 1.6736 -0.2249 -2.1480 6 6 3.5888 -0.7632 -1.2515 7 6 3.8476 -2.0091 -2.1437 8 1 3.8268 -1.7424 -3.2004 9 7 5.1195 -2.6466 -1.7943 10 6 5.7188 -3.4788 -2.6687 11 8 5.2038 -3.7003 -3.7487 12 6 6.9899 -4.1154 -2.3197 13 1 7.4964 -3.8444 -1.4052 14 6 7.5491 -5.0759 -3.1717 15 7 7.0013 -5.3173 -4.3332 16 14 9.0783 -6.0122 -2.6477 17 1 8.6811 -7.3039 -2.0320 18 1 9.9312 -6.2715 -3.8352 19 1 9.8381 -5.2056 -1.6591 20 6 2.6573 -2.9242 -1.7845 21 8 1.6254 -2.0965 -1.2351 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 0.8899 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 4.0056 0.1378 -1.7017 30 1 3.9791 -0.9138 -0.2450 31 1 5.5302 -2.4698 -0.9334 32 1 7.3888 -5.9823 -4.9235 33 1 2.9691 -3.6643 -1.0476 34 1 2.2913 -3.4259 -2.6803 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691468874.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:23 Heat of formation + Delta-G solvation = -104.538127 kcal Electronic energy + Delta-G solvation = -15961.353539 eV Core-core repulsion = 13279.418124 eV Total energy + Delta-G solvation = -2681.935415 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.54437 -37.07756 -35.02751 -33.38073 -32.34724 -29.92085 -27.77752 -27.09744 -25.92410 -22.81397 -21.25131 -20.27602 -19.18503 -17.33937 -16.45028 -15.77888 -15.35937 -14.76710 -14.28826 -13.89223 -13.80313 -13.20096 -12.97845 -12.63151 -12.32833 -12.27887 -12.06070 -11.84839 -11.25378 -11.13888 -11.09210 -10.93473 -10.69736 -10.65186 -10.50156 -10.29312 -10.18889 -9.12972 -8.88330 -7.69179 -7.59737 -6.23406 -4.68157 3.12218 3.19521 3.22903 3.99661 4.10714 4.51161 4.60760 4.82150 4.92420 5.07736 5.21660 5.25510 5.42666 5.55443 5.62058 5.71231 5.76534 5.80974 5.83464 5.89419 6.02957 6.09462 6.13935 6.27762 6.36386 6.46183 6.61496 7.34987 7.40431 7.86339 8.02713 8.28623 8.98838 9.46236 10.54947 10.72859 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.061954 B = 0.005371 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.838918 B = 5211.792820 C = 5384.473478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 C -0.147 4.147 4 C 0.086 3.914 5 H 0.067 0.933 6 C -0.157 4.157 7 C 0.129 3.871 8 H 0.088 0.912 9 N -0.755 5.755 10 C 0.553 3.447 11 O -0.579 6.579 12 C -0.546 4.546 13 H 0.068 0.932 14 C 0.088 3.912 15 N -0.767 5.767 16 Si 0.908 3.092 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.265 1.265 20 C 0.039 3.961 21 O -0.384 6.384 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.382 0.618 32 H 0.269 0.731 33 H 0.070 0.930 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.100 9.637 8.361 14.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 C -0.204 4.204 4 C 0.029 3.971 5 H 0.085 0.915 6 C -0.195 4.195 7 C 0.022 3.978 8 H 0.106 0.894 9 N -0.411 5.411 10 C 0.358 3.642 11 O -0.462 6.462 12 C -0.583 4.583 13 H 0.087 0.913 14 C -0.132 4.132 15 N -0.395 5.395 16 Si 0.733 3.267 17 H -0.198 1.198 18 H -0.204 1.204 19 H -0.189 1.189 20 C -0.039 4.039 21 O -0.303 6.303 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.214 0.786 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.667 9.290 7.436 14.155 hybrid contribution 1.161 -0.392 0.555 1.345 sum -6.506 8.897 7.991 13.614 Atomic orbital electron populations 1.21759 0.94875 1.02322 1.01063 1.21230 0.96430 0.95750 0.97841 1.21826 1.01379 0.95388 1.01802 1.22897 0.92977 0.83907 0.97367 0.91471 1.23549 0.95775 0.99102 1.01088 1.21988 0.85913 0.90463 0.99447 0.89385 1.46127 1.22294 1.51799 1.20864 1.18284 0.85429 0.77615 0.82912 1.90604 1.67585 1.64353 1.23652 1.20877 1.05494 1.23876 1.08027 0.91334 1.25703 0.97562 0.96083 0.93841 1.70020 1.36465 1.26326 1.06708 0.86351 0.81431 0.80090 0.78845 1.19768 1.20428 1.18877 1.23697 0.87938 0.93776 0.98482 1.88357 1.41165 1.16586 1.84173 0.92950 0.93104 0.91914 0.90682 0.92245 0.92589 0.92475 0.89953 0.90254 0.78568 0.92050 0.91189 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.08 37.16 0.34 -1.19 16 2 C -0.09 -1.07 2.70 -90.62 -0.24 -1.32 16 3 C -0.15 -1.37 8.98 37.16 0.33 -1.04 16 4 C 0.09 1.21 2.96 -25.70 -0.08 1.13 16 5 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 6 C -0.16 -2.27 5.12 -24.43 -0.12 -2.40 16 7 C 0.13 2.49 3.28 -65.93 -0.22 2.28 16 8 H 0.09 1.89 7.71 -51.93 -0.40 1.49 16 9 N -0.76 -16.65 5.14 -53.27 -0.27 -16.93 16 10 C 0.55 15.56 7.74 -12.99 -0.10 15.46 16 11 O -0.58 -18.55 14.78 5.20 0.08 -18.47 16 12 C -0.55 -15.29 9.53 -35.63 -0.34 -15.63 16 13 H 0.07 1.76 7.85 -52.49 -0.41 1.34 16 14 C 0.09 2.44 5.49 -17.37 -0.10 2.35 16 15 N -0.77 -22.89 11.85 55.55 0.66 -22.23 16 16 Si 0.91 20.00 29.56 -169.99 -5.03 14.98 16 17 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 18 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 20 C 0.04 0.74 7.56 37.88 0.29 1.03 16 21 O -0.38 -6.55 10.54 -35.23 -0.37 -6.93 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.75 7.80 -51.93 -0.40 0.35 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.06 0.55 7.23 -51.93 -0.38 0.17 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.08 1.08 8.05 -51.93 -0.42 0.66 16 30 H 0.08 1.08 7.91 -51.93 -0.41 0.67 16 31 H 0.38 7.40 8.49 -40.82 -0.35 7.05 16 32 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 33 H 0.07 1.38 8.02 -51.93 -0.42 0.96 16 34 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 283.97 15.07 4.28 4.28 Total: -1.00 -32.94 283.97 -6.17 -39.11 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -5.28 Total: 5.51 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -0.24 Total: 0.67 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.38 Total: -39.16 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.29 Total: -25.40 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.03 Total: 14.98 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.94 -6.17 -39.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691468874.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.428 kcal (2) G-P(sol) polarization free energy of solvation -32.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds