Wall clock time and date at job start Mon Mar 30 2020 03:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47088 * 2 1 4 4 C 1.53007 * 109.46878 * 240.00164 * 2 1 3 5 5 H 1.09002 * 110.27297 * 59.29979 * 4 2 1 6 6 C 1.54946 * 110.30933 * 181.38875 * 4 2 1 7 7 C 1.55409 * 100.89317 * 155.28523 * 6 4 2 8 8 H 1.09001 * 110.93108 * 84.25290 * 7 6 4 9 9 N 1.46499 * 110.88501 * 207.75441 * 7 6 4 10 10 C 1.34773 * 120.00242 * 199.37486 * 9 7 6 11 11 O 1.21690 * 120.00135 * 0.02562 * 10 9 7 12 12 C 1.46375 * 120.00301 * 179.97438 * 10 9 7 13 13 H 1.08000 * 119.99839 * 353.94805 * 12 10 9 14 14 C 1.40044 * 120.00002 * 173.93820 * 12 10 9 15 15 N 1.30669 * 120.00219 * 6.15889 * 14 12 10 16 16 Si 1.86806 * 119.99933 * 186.15506 * 14 12 10 17 17 H 1.48498 * 109.46915 * 94.98498 * 16 14 12 18 18 H 1.48494 * 109.47264 * 214.98562 * 16 14 12 19 19 H 1.48502 * 109.47158 * 334.98666 * 16 14 12 20 20 C 1.54382 * 102.31219 * 325.99333 * 7 6 4 21 21 O 1.43238 * 107.58825 * 21.28083 * 20 7 6 22 22 H 1.09002 * 109.47478 * 59.99695 * 1 2 3 23 23 H 1.09003 * 109.47180 * 300.00191 * 1 2 3 24 24 H 1.08999 * 109.47170 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47490 * 120.00313 * 2 1 3 26 26 H 1.09002 * 109.47164 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.46937 * 299.99993 * 3 2 1 28 28 H 1.08994 * 109.47162 * 60.00026 * 3 2 1 29 29 H 1.08997 * 111.12685 * 273.28380 * 6 4 2 30 30 H 1.09006 * 111.12218 * 37.43990 * 6 4 2 31 31 H 0.97006 * 119.99637 * 19.37698 * 9 7 6 32 32 H 0.97001 * 120.00328 * 179.97438 * 15 14 12 33 33 H 1.09001 * 109.83103 * 261.77409 * 20 7 6 34 34 H 1.08999 * 109.90829 * 140.83985 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 1 1.6736 -0.2249 -2.1480 6 6 3.5888 -0.7632 -1.2515 7 6 3.8476 -2.0091 -2.1437 8 1 3.8268 -1.7424 -3.2004 9 7 5.1195 -2.6466 -1.7943 10 6 5.7188 -3.4788 -2.6687 11 8 5.2038 -3.7003 -3.7487 12 6 6.9899 -4.1154 -2.3197 13 1 7.4964 -3.8444 -1.4052 14 6 7.5491 -5.0759 -3.1717 15 7 7.0013 -5.3173 -4.3332 16 14 9.0783 -6.0122 -2.6477 17 1 8.6811 -7.3039 -2.0320 18 1 9.9312 -6.2715 -3.8352 19 1 9.8381 -5.2056 -1.6591 20 6 2.6573 -2.9242 -1.7845 21 8 1.6254 -2.0965 -1.2351 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 0.8899 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 4.0056 0.1378 -1.7017 30 1 3.9791 -0.9138 -0.2450 31 1 5.5302 -2.4698 -0.9334 32 1 7.3888 -5.9823 -4.9235 33 1 2.9691 -3.6643 -1.0476 34 1 2.2913 -3.4259 -2.6803 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691468874.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:23 Heat of formation + Delta-G solvation = -128.518465 kcal Electronic energy + Delta-G solvation = -15962.393404 eV Core-core repulsion = 13279.418124 eV Total energy + Delta-G solvation = -2682.975280 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.95268 -39.05756 -36.11799 -35.19023 -34.45769 -31.48368 -29.27164 -28.06284 -27.75638 -24.05149 -22.91940 -21.69519 -20.67053 -19.29853 -17.87597 -17.38884 -17.19938 -16.19517 -15.92916 -15.32978 -15.09824 -14.61000 -14.46170 -14.26975 -13.87582 -13.45565 -13.13192 -12.98730 -12.94284 -12.78639 -12.63588 -12.39774 -12.30055 -12.00825 -11.81643 -11.67128 -11.38197 -10.94508 -10.50503 -9.90773 -9.55502 -8.31914 -6.87563 1.40610 1.41449 1.57642 2.23338 2.43835 2.67829 3.09946 3.43557 3.63396 3.78367 4.00379 4.06878 4.14042 4.20203 4.40286 4.45115 4.71369 4.74393 4.85371 4.86244 4.94602 5.02461 5.05174 5.14968 5.26629 5.31306 5.47300 5.47918 5.84817 5.99144 6.19350 6.24235 6.85344 7.50023 8.45755 8.64682 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.061954 B = 0.005371 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.838918 B = 5211.792820 C = 5384.473478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 C -0.143 4.143 4 C 0.080 3.920 5 H 0.072 0.928 6 C -0.139 4.139 7 C 0.122 3.878 8 H 0.060 0.940 9 N -0.741 5.741 10 C 0.538 3.462 11 O -0.630 6.630 12 C -0.573 4.573 13 H 0.090 0.910 14 C 0.030 3.970 15 N -0.821 5.821 16 Si 0.999 3.001 17 H -0.264 1.264 18 H -0.273 1.273 19 H -0.247 1.247 20 C 0.049 3.951 21 O -0.389 6.389 22 H 0.056 0.944 23 H 0.070 0.930 24 H 0.043 0.957 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.398 0.602 32 H 0.275 0.725 33 H 0.062 0.938 34 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.235 10.769 10.450 16.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 C -0.201 4.201 4 C 0.023 3.977 5 H 0.090 0.910 6 C -0.177 4.177 7 C 0.015 3.985 8 H 0.078 0.922 9 N -0.396 5.396 10 C 0.342 3.658 11 O -0.517 6.517 12 C -0.610 4.610 13 H 0.108 0.892 14 C -0.186 4.186 15 N -0.451 5.451 16 Si 0.818 3.182 17 H -0.189 1.189 18 H -0.198 1.198 19 H -0.170 1.170 20 C -0.030 4.030 21 O -0.308 6.308 22 H 0.075 0.925 23 H 0.089 0.911 24 H 0.062 0.938 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.120 0.880 30 H 0.114 0.886 31 H 0.233 0.767 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.824 10.471 9.582 15.749 hybrid contribution 0.798 -0.674 -0.089 1.048 sum -6.027 9.797 9.492 14.913 Atomic orbital electron populations 1.21755 0.94373 1.01509 1.02310 1.21237 0.96866 0.96747 0.95975 1.21816 1.01571 0.93738 1.02925 1.23199 0.92696 0.82457 0.99347 0.90969 1.23508 0.96235 0.97150 1.00773 1.22081 0.84620 0.92666 0.99125 0.92169 1.45736 1.22868 1.50479 1.20526 1.18657 0.86024 0.78188 0.82915 1.90562 1.68916 1.66295 1.25950 1.21435 1.05971 1.24500 1.09067 0.89237 1.26974 1.01479 0.96762 0.93361 1.70186 1.38940 1.27445 1.08502 0.84994 0.76124 0.78336 0.78762 1.18901 1.19789 1.16999 1.23388 0.88285 0.93971 0.97308 1.88362 1.40557 1.18122 1.83808 0.92481 0.91145 0.93751 0.90877 0.91936 0.92058 0.90847 0.87950 0.88640 0.76735 0.91524 0.91964 0.93595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.08 71.98 0.65 -2.08 16 2 C -0.09 -1.82 2.70 -10.79 -0.03 -1.85 16 3 C -0.14 -2.18 8.98 71.98 0.65 -1.54 16 4 C 0.08 2.12 2.96 31.26 0.09 2.21 16 5 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 6 C -0.14 -3.76 5.12 32.09 0.16 -3.60 16 7 C 0.12 4.76 3.28 46.29 0.15 4.91 16 8 H 0.06 2.69 7.71 -2.39 -0.02 2.67 16 9 N -0.74 -32.87 5.14 -440.68 -2.26 -35.13 16 10 C 0.54 30.99 7.74 86.36 0.67 31.66 16 11 O -0.63 -42.16 14.78 -4.32 -0.06 -42.23 16 12 C -0.57 -32.20 9.53 24.83 0.24 -31.97 16 13 H 0.09 4.48 7.85 -2.91 -0.02 4.45 16 14 C 0.03 1.64 5.49 85.30 0.47 2.11 16 15 N -0.82 -50.27 11.85 21.83 0.26 -50.01 16 16 Si 1.00 40.62 29.56 68.60 2.03 42.64 16 17 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 18 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 19 H -0.25 -9.24 7.11 99.48 0.71 -8.54 16 20 C 0.05 1.92 7.56 72.45 0.55 2.46 16 21 O -0.39 -13.20 10.54 -148.98 -1.57 -14.77 16 22 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 23 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.04 1.01 7.80 -2.39 -0.02 0.99 16 25 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.06 0.93 7.23 -2.39 -0.02 0.91 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.10 2.40 8.05 -2.39 -0.02 2.39 16 30 H 0.10 2.32 7.91 -2.38 -0.02 2.30 16 31 H 0.40 15.00 8.49 -92.70 -0.79 14.22 16 32 H 0.27 15.22 8.29 -92.71 -0.77 14.45 16 33 H 0.06 2.51 8.02 -2.39 -0.02 2.49 16 34 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -73.63 283.97 2.29 -71.35 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.29 Total: 25.82 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: 3.60 Total: 2.32 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -2.00 Total: -85.14 kcal Atomic # 8 Polarization: -55.36 SS G_CDS: -1.63 Total: -57.00 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.64 kcal Total: -73.63 2.29 -71.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691468874.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.171 kcal (2) G-P(sol) polarization free energy of solvation -73.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds