Wall clock time and date at job start Mon Mar 30 2020 03:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47014 * 2 1 4 4 C 1.52999 * 109.47187 * 120.00083 * 2 1 3 5 5 H 1.08999 * 110.45500 * 297.39629 * 4 2 1 6 6 C 1.54484 * 110.50950 * 174.64271 * 4 2 1 7 7 O 1.44528 * 104.87482 * 217.45166 * 6 4 2 8 8 C 1.44428 * 105.22541 * 40.35897 * 7 6 4 9 9 C 1.54483 * 104.89902 * 319.63499 * 8 7 6 10 10 H 1.08996 * 110.50829 * 142.57036 * 9 8 7 11 11 N 1.46503 * 110.50949 * 265.27933 * 9 8 7 12 12 C 1.34774 * 119.99923 * 273.54902 * 11 9 8 13 13 O 1.21689 * 120.00058 * 359.97438 * 12 11 9 14 14 C 1.46379 * 120.00043 * 180.02562 * 12 11 9 15 15 H 1.07996 * 119.99503 * 359.97438 * 14 12 11 16 16 C 1.40038 * 120.00072 * 179.97438 * 14 12 11 17 17 N 1.30672 * 120.00406 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99896 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47233 * 60.00083 * 18 16 14 20 20 H 1.48506 * 109.47142 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47117 * 299.99870 * 18 16 14 22 22 H 1.09004 * 109.47161 * 299.99598 * 1 2 3 23 23 H 1.08994 * 109.47400 * 59.99767 * 1 2 3 24 24 H 1.08999 * 109.47116 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47161 * 240.00401 * 2 1 3 26 26 H 1.09001 * 109.47117 * 180.02562 * 3 2 1 27 27 H 1.08994 * 109.47227 * 300.00339 * 3 2 1 28 28 H 1.09004 * 109.46829 * 60.00198 * 3 2 1 29 29 H 1.08997 * 110.37066 * 336.20583 * 6 4 2 30 30 H 1.08996 * 110.37396 * 98.44028 * 6 4 2 31 31 H 1.09002 * 110.37130 * 200.74856 * 8 7 6 32 32 H 1.08999 * 110.37385 * 78.52259 * 8 7 6 33 33 H 0.96999 * 119.99485 * 93.54990 * 11 9 8 34 34 H 0.97003 * 120.00257 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7240 -0.1939 2.1493 6 6 3.5787 -0.8533 1.2077 7 8 3.8549 -2.1533 1.7756 8 6 2.8331 -3.0245 1.2437 9 6 1.5383 -2.1824 1.2735 10 1 0.9270 -2.3909 0.3955 11 7 0.7830 -2.4455 2.5009 12 6 -0.0860 -3.4745 2.5498 13 8 -0.2436 -4.1848 1.5743 14 6 -0.8412 -3.7371 3.7760 15 1 -0.7016 -3.1065 4.6415 16 6 -1.7445 -4.8060 3.8267 17 7 -1.9138 -5.5687 2.7792 18 14 -2.7076 -5.1415 5.3917 19 1 -3.5360 -3.9555 5.7270 20 1 -3.5895 -6.3188 5.1875 21 1 -1.7636 -5.4165 6.5045 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.9358 -0.8069 0.1790 30 1 4.0431 -0.0692 1.8057 31 1 2.7248 -3.9094 1.8709 32 1 3.0749 -3.3127 0.2207 33 1 0.9083 -1.8791 3.2783 34 1 -2.5398 -6.3088 2.8142 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699815752.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:34 Heat of formation + Delta-G solvation = -102.263807 kcal Electronic energy + Delta-G solvation = -16374.891104 eV Core-core repulsion = 13693.054311 eV Total energy + Delta-G solvation = -2681.836793 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.66386 -36.82363 -35.52085 -33.01175 -32.16605 -29.16105 -28.30984 -26.88134 -25.92764 -22.69202 -21.69122 -19.71940 -19.36586 -17.19027 -15.99701 -15.73345 -15.24470 -15.21520 -14.35872 -14.00184 -13.58637 -13.25942 -12.85154 -12.58521 -12.27644 -12.10706 -11.99282 -11.62542 -11.22282 -11.08891 -11.00883 -10.64941 -10.62128 -10.43912 -10.36776 -10.28036 -10.19127 -9.49937 -8.84332 -7.62802 -7.48821 -6.18743 -4.64248 3.16091 3.20974 3.22852 4.10309 4.31152 4.57018 4.65592 4.80368 5.00092 5.09686 5.28471 5.39974 5.49294 5.58712 5.74845 5.75718 5.84662 5.90596 5.94300 5.98058 6.03279 6.11603 6.20294 6.32556 6.49154 6.52529 6.63542 7.15022 7.43390 7.92453 8.10386 8.33395 9.02496 9.52904 10.59504 10.77890 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.036796 B = 0.007046 C = 0.006575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.770230 B = 3972.927915 C = 4257.334855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.084 4.084 3 C -0.146 4.146 4 C -0.125 4.125 5 H 0.086 0.914 6 C 0.050 3.950 7 O -0.379 6.379 8 C 0.033 3.967 9 C 0.133 3.867 10 H 0.092 0.908 11 N -0.754 5.754 12 C 0.555 3.445 13 O -0.581 6.581 14 C -0.545 4.545 15 H 0.067 0.933 16 C 0.088 3.912 17 N -0.768 5.768 18 Si 0.907 3.093 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.268 1.268 22 H 0.054 0.946 23 H 0.050 0.950 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.054 0.946 33 H 0.381 0.619 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.338 10.890 -3.066 12.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 C -0.204 4.204 4 C -0.144 4.144 5 H 0.104 0.896 6 C -0.027 4.027 7 O -0.298 6.298 8 C -0.045 4.045 9 C 0.025 3.975 10 H 0.110 0.890 11 N -0.409 5.409 12 C 0.360 3.640 13 O -0.465 6.465 14 C -0.582 4.582 15 H 0.085 0.915 16 C -0.131 4.131 17 N -0.397 5.397 18 Si 0.732 3.268 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.193 1.193 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.213 0.787 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.281 10.129 -3.733 12.490 hybrid contribution -0.572 0.153 1.022 1.182 sum 5.709 10.282 -2.711 12.069 Atomic orbital electron populations 1.21877 0.94538 1.02995 1.01218 1.21089 0.96454 0.95650 0.97100 1.21863 1.00705 0.96077 1.01719 1.22902 0.95486 0.96752 0.99292 0.89572 1.23434 0.94361 0.86686 0.98203 1.89118 1.51650 1.19333 1.69720 1.24025 0.87189 0.94764 0.98560 1.21870 0.92475 0.91095 0.92014 0.89049 1.46179 1.46098 1.35719 1.12878 1.18211 0.78144 0.78442 0.89249 1.90597 1.68563 1.49179 1.38114 1.20855 1.24330 1.14917 0.98142 0.91522 1.25690 0.95886 0.94831 0.96742 1.70006 1.28388 1.12872 1.28421 0.86446 0.79697 0.78286 0.82389 1.19324 1.20564 1.19275 0.92665 0.93140 0.91521 0.91166 0.92812 0.92791 0.92638 0.92652 0.89713 0.88563 0.92758 0.78718 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 8.94 37.16 0.33 -1.74 16 2 C -0.08 -1.06 2.25 -90.62 -0.20 -1.26 16 3 C -0.15 -1.47 9.03 37.16 0.34 -1.14 16 4 C -0.13 -1.81 2.45 -89.05 -0.22 -2.03 16 5 H 0.09 1.24 7.66 -51.93 -0.40 0.85 16 6 C 0.05 0.69 6.27 37.94 0.24 0.93 16 7 O -0.38 -6.70 11.66 -35.23 -0.41 -7.11 16 8 C 0.03 0.62 7.34 37.94 0.28 0.89 16 9 C 0.13 2.53 2.52 -66.36 -0.17 2.36 16 10 H 0.09 1.91 5.97 -51.93 -0.31 1.60 16 11 N -0.75 -16.74 5.11 -53.69 -0.27 -17.02 16 12 C 0.56 15.56 7.74 -12.99 -0.10 15.46 16 13 O -0.58 -18.43 14.73 5.20 0.08 -18.35 16 14 C -0.55 -15.38 9.54 -35.63 -0.34 -15.72 16 15 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 16 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16 17 N -0.77 -22.98 11.83 55.55 0.66 -22.32 16 18 Si 0.91 20.20 29.56 -169.99 -5.02 15.17 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 1.13 6.52 -51.93 -0.34 0.79 16 25 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 26 H 0.05 0.49 7.45 -51.93 -0.39 0.10 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.68 7.83 -51.93 -0.41 0.27 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.10 2.06 8.06 -51.93 -0.42 1.65 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.38 7.68 8.29 -40.82 -0.34 7.34 16 34 H 0.27 7.31 8.29 -40.82 -0.34 6.98 16 LS Contribution 280.64 15.07 4.23 4.23 Total: -1.00 -32.86 280.64 -5.79 -38.65 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -5.10 Total: 6.63 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 0.06 Total: 0.11 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.38 Total: -39.34 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.33 Total: -25.46 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.86 -5.79 -38.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699815752.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.613 kcal (2) G-P(sol) polarization free energy of solvation -32.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds