Wall clock time and date at job start Mon Mar 30 2020 03:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47014 * 2 1 4 4 C 1.52999 * 109.47187 * 120.00083 * 2 1 3 5 5 H 1.08999 * 110.45500 * 297.39629 * 4 2 1 6 6 C 1.54484 * 110.50950 * 174.64271 * 4 2 1 7 7 O 1.44528 * 104.87482 * 217.45166 * 6 4 2 8 8 C 1.44428 * 105.22541 * 40.35897 * 7 6 4 9 9 C 1.54483 * 104.89902 * 319.63499 * 8 7 6 10 10 H 1.08996 * 110.50829 * 142.57036 * 9 8 7 11 11 N 1.46503 * 110.50949 * 265.27933 * 9 8 7 12 12 C 1.34774 * 119.99923 * 273.54902 * 11 9 8 13 13 O 1.21689 * 120.00058 * 359.97438 * 12 11 9 14 14 C 1.46379 * 120.00043 * 180.02562 * 12 11 9 15 15 H 1.07996 * 119.99503 * 359.97438 * 14 12 11 16 16 C 1.40038 * 120.00072 * 179.97438 * 14 12 11 17 17 N 1.30672 * 120.00406 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99896 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47233 * 60.00083 * 18 16 14 20 20 H 1.48506 * 109.47142 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47117 * 299.99870 * 18 16 14 22 22 H 1.09004 * 109.47161 * 299.99598 * 1 2 3 23 23 H 1.08994 * 109.47400 * 59.99767 * 1 2 3 24 24 H 1.08999 * 109.47116 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47161 * 240.00401 * 2 1 3 26 26 H 1.09001 * 109.47117 * 180.02562 * 3 2 1 27 27 H 1.08994 * 109.47227 * 300.00339 * 3 2 1 28 28 H 1.09004 * 109.46829 * 60.00198 * 3 2 1 29 29 H 1.08997 * 110.37066 * 336.20583 * 6 4 2 30 30 H 1.08996 * 110.37396 * 98.44028 * 6 4 2 31 31 H 1.09002 * 110.37130 * 200.74856 * 8 7 6 32 32 H 1.08999 * 110.37385 * 78.52259 * 8 7 6 33 33 H 0.96999 * 119.99485 * 93.54990 * 11 9 8 34 34 H 0.97003 * 120.00257 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7240 -0.1939 2.1493 6 6 3.5787 -0.8533 1.2077 7 8 3.8549 -2.1533 1.7756 8 6 2.8331 -3.0245 1.2437 9 6 1.5383 -2.1824 1.2735 10 1 0.9270 -2.3909 0.3955 11 7 0.7830 -2.4455 2.5009 12 6 -0.0860 -3.4745 2.5498 13 8 -0.2436 -4.1848 1.5743 14 6 -0.8412 -3.7371 3.7760 15 1 -0.7016 -3.1065 4.6415 16 6 -1.7445 -4.8060 3.8267 17 7 -1.9138 -5.5687 2.7792 18 14 -2.7076 -5.1415 5.3917 19 1 -3.5360 -3.9555 5.7270 20 1 -3.5895 -6.3188 5.1875 21 1 -1.7636 -5.4165 6.5045 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.9358 -0.8069 0.1790 30 1 4.0431 -0.0692 1.8057 31 1 2.7248 -3.9094 1.8709 32 1 3.0749 -3.3127 0.2207 33 1 0.9083 -1.8791 3.2783 34 1 -2.5398 -6.3088 2.8142 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699815752.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:34 Heat of formation + Delta-G solvation = -126.758131 kcal Electronic energy + Delta-G solvation = -16375.953258 eV Core-core repulsion = 13693.054311 eV Total energy + Delta-G solvation = -2682.898946 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.08083 -38.85167 -36.68578 -34.94456 -34.23220 -30.64025 -29.71937 -28.02848 -27.84311 -23.98367 -23.20367 -21.31405 -20.90751 -19.12028 -17.52509 -17.42761 -16.95969 -16.56171 -15.88483 -15.72066 -14.92071 -14.67844 -14.28179 -14.15182 -13.93626 -13.45308 -13.23070 -13.01755 -12.80855 -12.68145 -12.56299 -12.36735 -12.24692 -12.06271 -11.65248 -11.53592 -11.38197 -10.94358 -10.83284 -9.85570 -9.41738 -8.29390 -6.85982 1.39122 1.42465 1.53979 2.23968 2.46256 3.01022 3.05079 3.49223 3.64182 3.81350 3.94967 4.14736 4.19129 4.38078 4.39820 4.52405 4.66938 4.75703 4.82287 4.84544 4.88575 4.94337 5.06548 5.17412 5.26526 5.31098 5.44496 5.49488 5.76555 5.90404 6.21599 6.30873 6.86509 7.53634 8.49161 8.67099 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.036796 B = 0.007046 C = 0.006575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.770230 B = 3972.927915 C = 4257.334855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.140 4.140 4 C -0.113 4.113 5 H 0.091 0.909 6 C 0.050 3.950 7 O -0.393 6.393 8 C 0.039 3.961 9 C 0.126 3.874 10 H 0.067 0.933 11 N -0.743 5.743 12 C 0.542 3.458 13 O -0.629 6.629 14 C -0.576 4.576 15 H 0.084 0.916 16 C 0.030 3.970 17 N -0.821 5.821 18 Si 0.996 3.004 19 H -0.254 1.254 20 H -0.274 1.274 21 H -0.256 1.256 22 H 0.053 0.947 23 H 0.069 0.931 24 H 0.025 0.975 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.115 0.885 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.392 0.608 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.971 12.957 -2.110 14.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.099 4.099 3 C -0.197 4.197 4 C -0.132 4.132 5 H 0.109 0.891 6 C -0.027 4.027 7 O -0.312 6.312 8 C -0.039 4.039 9 C 0.020 3.980 10 H 0.085 0.915 11 N -0.396 5.396 12 C 0.346 3.654 13 O -0.516 6.516 14 C -0.613 4.613 15 H 0.103 0.897 16 C -0.185 4.185 17 N -0.450 5.450 18 Si 0.815 3.185 19 H -0.178 1.178 20 H -0.198 1.198 21 H -0.180 1.180 22 H 0.072 0.928 23 H 0.088 0.912 24 H 0.044 0.956 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.133 0.867 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.226 0.774 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.957 12.256 -2.771 14.363 hybrid contribution -0.716 -0.436 0.667 1.071 sum 6.242 11.820 -2.103 13.531 Atomic orbital electron populations 1.21845 0.95936 1.00486 1.02118 1.21087 0.95186 0.97551 0.96068 1.21813 1.01715 0.93616 1.02558 1.22860 0.96233 0.93454 1.00673 0.89111 1.23721 0.93452 0.85459 1.00032 1.89100 1.50936 1.20869 1.70294 1.23777 0.87632 0.93925 0.98576 1.22030 0.91796 0.94691 0.89512 0.91524 1.45852 1.45058 1.34237 1.14439 1.18525 0.78875 0.79102 0.88897 1.90549 1.70300 1.51197 1.39574 1.21411 1.25075 1.15944 0.98849 0.89741 1.26933 0.96672 0.93980 1.00921 1.70173 1.29549 1.13767 1.31556 0.85102 0.77955 0.78613 0.76817 1.17828 1.19826 1.17998 0.92818 0.91217 0.95627 0.90848 0.91135 0.91561 0.92295 0.90450 0.86728 0.92100 0.91267 0.77421 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.01 8.94 71.98 0.64 -3.37 16 2 C -0.08 -1.85 2.25 -10.79 -0.02 -1.88 16 3 C -0.14 -2.28 9.03 71.98 0.65 -1.63 16 4 C -0.11 -3.09 2.45 -9.78 -0.02 -3.11 16 5 H 0.09 2.42 7.66 -2.39 -0.02 2.40 16 6 C 0.05 1.20 6.27 72.49 0.45 1.66 16 7 O -0.39 -13.32 11.66 -148.98 -1.74 -15.06 16 8 C 0.04 1.50 7.34 72.49 0.53 2.03 16 9 C 0.13 4.90 2.52 46.01 0.12 5.01 16 10 H 0.07 2.94 5.97 -2.39 -0.01 2.93 16 11 N -0.74 -33.85 5.11 -442.00 -2.26 -36.11 16 12 C 0.54 31.58 7.74 86.36 0.67 32.25 16 13 O -0.63 -42.03 14.73 -4.31 -0.06 -42.09 16 14 C -0.58 -33.08 9.54 24.83 0.24 -32.84 16 15 H 0.08 4.37 7.85 -2.91 -0.02 4.35 16 16 C 0.03 1.70 5.50 85.30 0.47 2.16 16 17 N -0.82 -50.67 11.83 21.83 0.26 -50.41 16 18 Si 1.00 41.42 29.56 68.60 2.03 43.45 16 19 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 20 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 21 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 22 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.02 0.89 6.52 -2.39 -0.02 0.88 16 25 H 0.07 1.67 8.08 -2.39 -0.02 1.65 16 26 H 0.07 0.94 7.45 -2.39 -0.02 0.93 16 27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.08 1.59 7.83 -2.39 -0.02 1.57 16 30 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.06 2.75 8.06 -2.39 -0.02 2.73 16 32 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.39 15.89 8.29 -92.71 -0.77 15.12 16 34 H 0.27 15.37 8.29 -92.71 -0.77 14.60 16 Total: -1.00 -74.49 280.64 2.27 -72.22 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.32 Total: 27.72 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 3.72 Total: 0.28 kcal Atomic # 7 Polarization: -84.52 SS G_CDS: -2.00 Total: -86.52 kcal Atomic # 8 Polarization: -55.35 SS G_CDS: -1.80 Total: -57.15 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -74.49 2.27 -72.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699815752.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.538 kcal (2) G-P(sol) polarization free energy of solvation -74.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds