Wall clock time and date at job start Mon Mar 30 2020 03:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 110.36575 * 2 1 4 4 C 1.54376 * 110.32129 * 237.81890 * 2 1 3 5 5 N 1.48561 * 104.59375 * 264.95674 * 4 2 1 6 6 C 1.46901 * 110.99891 * 200.96507 * 5 4 2 7 7 C 1.50702 * 109.47011 * 170.00116 * 6 5 4 8 8 H 1.07999 * 120.00061 * 359.97438 * 7 6 5 9 9 C 1.37884 * 119.99826 * 179.97438 * 7 6 5 10 10 N 1.31504 * 120.00082 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99682 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47211 * 60.00229 * 11 9 7 13 13 H 1.48499 * 109.47045 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47409 * 300.00224 * 11 9 7 15 15 C 1.48722 * 104.28863 * 320.57389 * 5 4 2 16 16 C 1.54259 * 110.31898 * 122.18145 * 2 1 3 17 17 H 1.08998 * 110.32794 * 359.89802 * 16 2 1 18 18 C 1.50706 * 110.32030 * 237.78814 * 16 2 1 19 19 O 1.20821 * 120.00292 * 272.77966 * 18 16 2 20 20 O 1.34228 * 119.99449 * 92.77928 * 18 16 2 21 21 H 1.09000 * 109.47216 * 297.82104 * 1 2 3 22 22 H 1.09000 * 109.47164 * 57.81785 * 1 2 3 23 23 H 1.08996 * 109.47527 * 177.81597 * 1 2 3 24 24 H 1.09005 * 109.46673 * 182.68534 * 3 2 1 25 25 H 1.08999 * 109.47389 * 302.68449 * 3 2 1 26 26 H 1.08995 * 109.47322 * 62.68882 * 3 2 1 27 27 H 1.08997 * 110.41882 * 23.73270 * 4 2 1 28 28 H 1.09005 * 110.41113 * 146.06448 * 4 2 1 29 29 H 1.09003 * 109.47168 * 289.99305 * 6 5 4 30 30 H 1.08995 * 109.47793 * 50.00063 * 6 5 4 31 31 H 0.97005 * 119.99938 * 179.97438 * 10 9 7 32 32 H 1.08994 * 110.39238 * 280.64346 * 15 5 4 33 33 H 1.09001 * 110.50987 * 158.14439 * 15 5 4 34 34 H 0.96703 * 116.99408 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0625 1.4343 0.0000 4 6 2.0661 -0.7710 -1.2253 5 7 2.3147 -2.1467 -0.7225 6 6 3.2649 -2.8594 -1.5868 7 6 3.6805 -4.1466 -0.9222 8 1 3.2792 -4.4087 0.0456 9 6 4.5731 -4.9896 -1.5498 10 7 5.0613 -4.6706 -2.7285 11 14 5.0887 -6.5847 -0.7258 12 1 3.8919 -7.4340 -0.4988 13 1 6.0492 -7.3052 -1.5995 14 1 5.7354 -6.2826 0.5764 15 6 2.8800 -1.9437 0.6380 16 6 2.0657 -0.7705 1.2244 17 1 1.2387 -1.1471 1.8262 18 6 2.9539 0.1195 2.0552 19 8 4.1314 0.2064 1.7991 20 8 2.4366 0.8156 3.0797 21 1 -0.3633 0.4796 0.9089 22 1 -0.3633 0.5473 -0.8698 23 1 -0.3634 -1.0269 -0.0392 24 1 3.1513 1.4176 -0.0482 25 1 1.6687 1.9681 -0.8649 26 1 1.7469 1.9391 0.9131 27 1 1.3213 -0.7860 -2.0209 28 1 2.9930 -0.3214 -1.5816 29 1 2.7908 -3.0809 -2.5430 30 1 4.1435 -2.2361 -1.7526 31 1 5.6895 -5.2635 -3.1698 32 1 3.9357 -1.6798 0.5751 33 1 2.7467 -2.8395 1.2446 34 1 3.0454 1.3731 3.5834 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709950236.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:39 Heat of formation + Delta-G solvation = -97.085059 kcal Electronic energy + Delta-G solvation = -16535.592297 eV Core-core repulsion = 13853.980071 eV Total energy + Delta-G solvation = -2681.612225 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.68431 -38.31815 -35.92587 -34.22992 -32.19906 -30.03043 -27.43018 -27.16672 -24.67946 -23.75168 -21.37354 -20.15059 -18.79784 -17.89596 -16.36879 -16.16741 -15.76463 -14.92728 -14.49539 -14.11662 -13.68310 -13.21379 -13.04347 -12.79307 -12.56761 -12.00929 -11.74910 -11.58405 -11.45534 -11.20644 -11.01398 -10.87056 -10.70655 -10.52134 -10.41638 -10.33869 -10.14802 -9.78725 -9.11175 -8.45755 -7.42397 -6.03157 -4.05031 2.37410 3.16652 3.34272 3.37958 3.40750 4.42835 4.67835 4.78897 4.91141 5.26074 5.32536 5.36291 5.54281 5.61742 5.62995 5.70791 5.87155 6.00324 6.09033 6.21867 6.27514 6.38643 6.49534 6.50902 6.56922 6.71134 7.13326 7.35250 7.70693 7.93581 8.05607 8.15025 8.46562 9.01281 9.59289 11.08174 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.034446 B = 0.007575 C = 0.006866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.675058 B = 3695.494720 C = 4077.031749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.052 4.052 3 C -0.156 4.156 4 C 0.038 3.962 5 N -0.505 5.505 6 C 0.182 3.818 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.057 3.943 10 N -0.896 5.896 11 Si 0.898 3.102 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.059 3.941 16 C -0.086 4.086 17 H 0.106 0.894 18 C 0.490 3.510 19 O -0.511 6.511 20 O -0.521 6.521 21 H 0.053 0.947 22 H 0.056 0.944 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.041 0.959 29 H 0.035 0.965 30 H -0.004 1.004 31 H 0.262 0.738 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.506 11.101 7.909 15.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.053 4.053 3 C -0.213 4.213 4 C -0.090 4.090 5 N -0.229 5.229 6 C 0.057 3.943 7 C -0.554 4.554 8 H 0.081 0.919 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.726 3.274 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.203 1.203 15 C -0.069 4.069 16 C -0.106 4.106 17 H 0.124 0.876 18 C 0.332 3.668 19 O -0.398 6.398 20 O -0.332 6.332 21 H 0.072 0.928 22 H 0.075 0.925 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.013 0.987 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -7.801 10.458 7.447 15.023 hybrid contribution 1.618 -0.040 0.648 1.743 sum -6.183 10.418 8.095 14.570 Atomic orbital electron populations 1.21828 0.92976 1.02791 1.01292 1.21223 0.96413 0.94252 0.93420 1.22141 1.01647 0.95457 1.02079 1.23223 0.99589 0.90602 0.95609 1.65567 1.43701 1.11730 1.01879 1.19902 0.88635 0.93075 0.92696 1.21136 1.25249 1.04178 1.04788 0.91930 1.24984 0.96126 0.98393 0.94948 1.69944 1.31347 1.37660 1.14603 0.86561 0.78385 0.83262 0.79231 1.20113 1.21290 1.20255 1.22944 0.97139 0.94392 0.92439 1.22110 0.98231 0.95165 0.95102 0.87572 1.23470 0.87719 0.77844 0.77744 1.90719 1.18107 1.62768 1.68183 1.84591 1.47117 1.57743 1.43772 0.92831 0.92462 0.91247 0.91979 0.91749 0.92413 0.90459 0.94108 0.94666 0.98669 0.92815 0.91960 0.89716 0.73942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 8.23 37.16 0.31 -1.30 16 2 C -0.05 -0.77 1.03 -153.13 -0.16 -0.93 16 3 C -0.16 -2.06 7.28 37.16 0.27 -1.79 16 4 C 0.04 0.70 5.59 -2.18 -0.01 0.68 16 5 N -0.50 -10.96 5.48 -231.27 -1.27 -12.23 16 6 C 0.18 4.83 4.82 -4.97 -0.02 4.81 16 7 C -0.52 -14.59 8.58 -34.44 -0.30 -14.89 16 8 H 0.06 1.73 6.64 -52.49 -0.35 1.38 16 9 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 10 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 11 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 C 0.06 1.19 5.04 -2.09 -0.01 1.18 16 16 C -0.09 -1.36 3.20 -90.38 -0.29 -1.65 16 17 H 0.11 1.49 7.71 -51.93 -0.40 1.09 16 18 C 0.49 7.49 5.25 36.01 0.19 7.68 16 19 O -0.51 -9.51 15.73 -18.75 -0.29 -9.81 16 20 O -0.52 -5.98 13.06 -39.25 -0.51 -6.49 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.06 0.95 7.00 -51.93 -0.36 0.58 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.69 7.23 -51.93 -0.38 0.31 16 27 H 0.08 1.31 7.86 -51.93 -0.41 0.90 16 28 H 0.04 0.79 7.50 -51.93 -0.39 0.40 16 29 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.00 -0.13 7.88 -51.93 -0.41 -0.54 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.06 1.43 6.73 -51.93 -0.35 1.08 16 33 H 0.08 1.72 7.22 -51.93 -0.37 1.34 16 34 H 0.40 2.88 9.10 45.56 0.41 3.29 16 LS Contribution 276.79 15.07 4.17 4.17 Total: -1.00 -32.09 276.79 -6.56 -38.65 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -4.25 Total: -0.26 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -0.12 Total: -4.65 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: -0.53 Total: -38.45 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.81 Total: -16.30 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -32.09 -6.56 -38.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709950236.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.438 kcal (2) G-P(sol) polarization free energy of solvation -32.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds