Wall clock time and date at job start Mon Mar 30 2020 03:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 110.36575 * 2 1 4 4 C 1.54376 * 110.32129 * 237.81890 * 2 1 3 5 5 N 1.48561 * 104.59375 * 264.95674 * 4 2 1 6 6 C 1.46901 * 110.99891 * 200.96507 * 5 4 2 7 7 C 1.50702 * 109.47011 * 170.00116 * 6 5 4 8 8 H 1.07999 * 120.00061 * 359.97438 * 7 6 5 9 9 C 1.37884 * 119.99826 * 179.97438 * 7 6 5 10 10 N 1.31504 * 120.00082 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99682 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47211 * 60.00229 * 11 9 7 13 13 H 1.48499 * 109.47045 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47409 * 300.00224 * 11 9 7 15 15 C 1.48722 * 104.28863 * 320.57389 * 5 4 2 16 16 C 1.54259 * 110.31898 * 122.18145 * 2 1 3 17 17 H 1.08998 * 110.32794 * 359.89802 * 16 2 1 18 18 C 1.50706 * 110.32030 * 237.78814 * 16 2 1 19 19 O 1.20821 * 120.00292 * 272.77966 * 18 16 2 20 20 O 1.34228 * 119.99449 * 92.77928 * 18 16 2 21 21 H 1.09000 * 109.47216 * 297.82104 * 1 2 3 22 22 H 1.09000 * 109.47164 * 57.81785 * 1 2 3 23 23 H 1.08996 * 109.47527 * 177.81597 * 1 2 3 24 24 H 1.09005 * 109.46673 * 182.68534 * 3 2 1 25 25 H 1.08999 * 109.47389 * 302.68449 * 3 2 1 26 26 H 1.08995 * 109.47322 * 62.68882 * 3 2 1 27 27 H 1.08997 * 110.41882 * 23.73270 * 4 2 1 28 28 H 1.09005 * 110.41113 * 146.06448 * 4 2 1 29 29 H 1.09003 * 109.47168 * 289.99305 * 6 5 4 30 30 H 1.08995 * 109.47793 * 50.00063 * 6 5 4 31 31 H 0.97005 * 119.99938 * 179.97438 * 10 9 7 32 32 H 1.08994 * 110.39238 * 280.64346 * 15 5 4 33 33 H 1.09001 * 110.50987 * 158.14439 * 15 5 4 34 34 H 0.96703 * 116.99408 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0625 1.4343 0.0000 4 6 2.0661 -0.7710 -1.2253 5 7 2.3147 -2.1467 -0.7225 6 6 3.2649 -2.8594 -1.5868 7 6 3.6805 -4.1466 -0.9222 8 1 3.2792 -4.4087 0.0456 9 6 4.5731 -4.9896 -1.5498 10 7 5.0613 -4.6706 -2.7285 11 14 5.0887 -6.5847 -0.7258 12 1 3.8919 -7.4340 -0.4988 13 1 6.0492 -7.3052 -1.5995 14 1 5.7354 -6.2826 0.5764 15 6 2.8800 -1.9437 0.6380 16 6 2.0657 -0.7705 1.2244 17 1 1.2387 -1.1471 1.8262 18 6 2.9539 0.1195 2.0552 19 8 4.1314 0.2064 1.7991 20 8 2.4366 0.8156 3.0797 21 1 -0.3633 0.4796 0.9089 22 1 -0.3633 0.5473 -0.8698 23 1 -0.3634 -1.0269 -0.0392 24 1 3.1513 1.4176 -0.0482 25 1 1.6687 1.9681 -0.8649 26 1 1.7469 1.9391 0.9131 27 1 1.3213 -0.7860 -2.0209 28 1 2.9930 -0.3214 -1.5816 29 1 2.7908 -3.0809 -2.5430 30 1 4.1435 -2.2361 -1.7526 31 1 5.6895 -5.2635 -3.1698 32 1 3.9357 -1.6798 0.5751 33 1 2.7467 -2.8395 1.2446 34 1 3.0454 1.3731 3.5834 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709950236.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:38 Heat of formation + Delta-G solvation = -121.204772 kcal Electronic energy + Delta-G solvation = -16536.638206 eV Core-core repulsion = 13853.980071 eV Total energy + Delta-G solvation = -2682.658135 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.95819 -39.69089 -37.07257 -35.96528 -34.17734 -31.47021 -29.27774 -28.27630 -26.15987 -25.54780 -22.90781 -21.77081 -20.08489 -19.06735 -18.33822 -17.63488 -17.07961 -16.66084 -16.08129 -15.68875 -15.19868 -14.54720 -14.32113 -14.26920 -14.16863 -13.47054 -13.28762 -13.06986 -12.80454 -12.68661 -12.66655 -12.45042 -12.30842 -12.14682 -11.91177 -11.69034 -11.54847 -11.38089 -11.16002 -10.66018 -9.28358 -8.24733 -6.35424 1.16022 1.38657 1.42519 1.50189 2.03859 2.37911 3.08684 3.39410 3.40631 3.49633 3.91947 4.17110 4.30282 4.31361 4.49071 4.64620 4.70409 4.76152 4.85239 4.91032 4.99768 5.04125 5.11805 5.18180 5.23106 5.29032 5.50018 5.56814 5.59883 5.87315 6.11967 6.42491 6.79414 7.00712 7.34383 8.87386 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.034446 B = 0.007575 C = 0.006866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.675058 B = 3695.494720 C = 4077.031749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.045 4.045 3 C -0.150 4.150 4 C 0.033 3.967 5 N -0.507 5.507 6 C 0.198 3.802 7 C -0.533 4.533 8 H 0.067 0.933 9 C 0.001 3.999 10 N -0.934 5.934 11 Si 0.971 3.029 12 H -0.263 1.263 13 H -0.282 1.282 14 H -0.270 1.270 15 C 0.059 3.941 16 C -0.082 4.082 17 H 0.134 0.866 18 C 0.501 3.499 19 O -0.551 6.551 20 O -0.502 6.502 21 H 0.078 0.922 22 H 0.072 0.928 23 H 0.059 0.941 24 H 0.034 0.966 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.019 0.981 29 H 0.010 0.990 30 H -0.041 1.041 31 H 0.265 0.735 32 H 0.026 0.974 33 H 0.079 0.921 34 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.216 11.641 9.766 17.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.046 4.046 3 C -0.207 4.207 4 C -0.095 4.095 5 N -0.230 5.230 6 C 0.071 3.929 7 C -0.571 4.571 8 H 0.085 0.915 9 C -0.198 4.198 10 N -0.574 5.574 11 Si 0.795 3.205 12 H -0.188 1.188 13 H -0.207 1.207 14 H -0.195 1.195 15 C -0.070 4.070 16 C -0.102 4.102 17 H 0.152 0.848 18 C 0.345 3.655 19 O -0.442 6.442 20 O -0.315 6.315 21 H 0.097 0.903 22 H 0.091 0.909 23 H 0.078 0.922 24 H 0.053 0.947 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.037 0.963 29 H 0.028 0.972 30 H -0.024 1.024 31 H 0.074 0.926 32 H 0.045 0.955 33 H 0.098 0.902 34 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -9.541 11.032 9.339 17.319 hybrid contribution 2.135 -0.128 0.084 2.140 sum -7.407 10.904 9.423 16.203 Atomic orbital electron populations 1.21803 0.90187 1.02873 1.03394 1.21245 0.98409 0.94321 0.90591 1.22093 0.99892 0.94661 1.04092 1.23365 0.99164 0.89001 0.97961 1.65443 1.41590 1.13871 1.02109 1.19532 0.87911 0.92864 0.92579 1.21483 1.25598 1.04915 1.05080 0.91497 1.25971 0.95979 1.02283 0.95519 1.70083 1.31951 1.39175 1.16163 0.85413 0.78362 0.78523 0.78223 1.18767 1.20677 1.19466 1.22826 0.95984 0.96352 0.91808 1.22036 0.98137 0.93923 0.96080 0.84787 1.23191 0.86711 0.77586 0.78034 1.90726 1.19837 1.64141 1.69483 1.84510 1.47178 1.57351 1.42471 0.90303 0.90876 0.92156 0.94681 0.89863 0.90237 0.89208 0.96293 0.97171 1.02370 0.92588 0.95544 0.90222 0.71256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 8.23 71.98 0.59 -2.00 16 2 C -0.04 -1.23 1.03 -51.29 -0.05 -1.29 16 3 C -0.15 -3.63 7.28 71.98 0.52 -3.10 16 4 C 0.03 1.22 5.59 86.45 0.48 1.71 16 5 N -0.51 -22.64 5.48 -885.59 -4.85 -27.49 16 6 C 0.20 11.06 4.82 85.56 0.41 11.47 16 7 C -0.53 -31.10 8.58 25.60 0.22 -30.88 16 8 H 0.07 3.76 6.64 -2.91 -0.02 3.74 16 9 C 0.00 0.05 5.46 84.66 0.46 0.51 16 10 N -0.93 -57.84 13.29 21.45 0.28 -57.55 16 11 Si 0.97 45.21 29.54 68.60 2.03 47.23 16 12 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 14 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 15 C 0.06 2.42 5.04 86.42 0.44 2.86 16 16 C -0.08 -2.46 3.20 -10.64 -0.03 -2.49 16 17 H 0.13 3.31 7.71 -2.39 -0.02 3.29 16 18 C 0.50 14.46 5.25 71.24 0.37 14.83 16 19 O -0.55 -20.57 15.73 21.98 0.35 -20.22 16 20 O -0.50 -9.71 13.06 -51.40 -0.67 -10.38 16 21 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 24 H 0.03 1.04 7.00 -2.38 -0.02 1.02 16 25 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.08 1.59 7.23 -2.39 -0.02 1.57 16 27 H 0.09 3.02 7.86 -2.39 -0.02 3.00 16 28 H 0.02 0.77 7.50 -2.38 -0.02 0.75 16 29 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 30 H -0.04 -2.56 7.88 -2.39 -0.02 -2.58 16 31 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 32 H 0.03 1.27 6.73 -2.39 -0.02 1.26 16 33 H 0.08 3.28 7.22 -2.39 -0.02 3.27 16 34 H 0.43 4.52 9.10 -74.06 -0.67 3.85 16 Total: -1.00 -72.23 276.79 0.97 -71.26 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: 0.42 Total: 5.54 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 3.42 Total: -8.39 kcal Atomic # 7 Polarization: -80.48 SS G_CDS: -4.57 Total: -85.04 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -0.33 Total: -30.60 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -72.23 0.97 -71.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709950236.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.947 kcal (2) G-P(sol) polarization free energy of solvation -72.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds