Wall clock time and date at job start Mon Mar 30 2020 03:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99846 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99598 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99591 * 3 2 1 7 7 C 1.38811 * 120.00460 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00021 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99586 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99727 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47072 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47548 * 55.00120 * 11 10 9 13 13 C 1.53000 * 109.47115 * 294.99972 * 11 10 9 14 14 C 1.53002 * 109.47580 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.46561 * 60.00113 * 14 13 11 16 16 C 1.53004 * 109.47423 * 300.00274 * 15 14 13 17 17 H 1.09001 * 109.47399 * 180.02562 * 16 15 14 18 18 C 1.50695 * 109.46868 * 300.00108 * 16 15 14 19 19 O 1.20829 * 120.00103 * 119.99702 * 18 16 15 20 20 O 1.34234 * 120.00691 * 300.00007 * 18 16 15 21 21 C 1.52999 * 109.47011 * 60.00055 * 16 15 14 22 22 H 0.97001 * 119.99952 * 179.97438 * 1 2 3 23 23 H 0.96998 * 120.00177 * 0.02562 * 9 7 2 24 24 H 1.09000 * 109.47389 * 300.00077 * 10 9 7 25 25 H 1.09007 * 109.46966 * 60.00169 * 10 9 7 26 26 H 1.09002 * 109.47464 * 300.00286 * 13 11 10 27 27 H 1.09001 * 109.47057 * 59.99877 * 13 11 10 28 28 H 1.08994 * 109.47434 * 179.97438 * 14 13 11 29 29 H 1.08994 * 109.46801 * 300.00615 * 14 13 11 30 30 H 1.09006 * 109.47358 * 60.00380 * 15 14 13 31 31 H 1.09003 * 109.47013 * 180.02562 * 15 14 13 32 32 H 0.96694 * 117.00738 * 180.02562 * 20 18 16 33 33 H 1.09007 * 109.46921 * 180.02562 * 21 16 15 34 34 H 1.08994 * 109.46845 * 59.99998 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1040 1.6964 -1.2125 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 -0.0001 12 1 0.3802 -4.7127 -0.8421 13 6 0.2687 -4.8115 1.3069 14 6 -0.7260 -5.9741 1.3061 15 6 0.0346 -7.2957 1.1802 16 6 0.8299 -7.3039 -0.1269 17 1 1.3714 -8.2457 -0.2168 18 6 -0.1154 -7.1554 -1.2910 19 8 -0.0051 -6.2160 -2.0429 20 8 -1.0802 -8.0666 -1.4928 21 6 1.8245 -6.1413 -0.1260 22 1 -0.4850 -0.8401 -0.0004 23 1 0.3556 -2.3881 -0.0002 24 1 2.6849 -3.7145 -0.8894 25 1 2.6849 -3.7144 0.8906 26 1 0.9525 -4.9185 2.1490 27 1 -0.2734 -3.8701 1.3965 28 1 -1.2922 -5.9685 2.2374 29 1 -1.4096 -5.8666 0.4641 30 1 0.7184 -7.4032 2.0222 31 1 -0.6740 -8.1240 1.1791 32 1 -1.6621 -7.9291 -2.2527 33 1 2.3908 -6.1469 -1.0574 34 1 2.5082 -6.2488 0.7160 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713932713.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:50 Heat of formation + Delta-G solvation = -103.422542 kcal Electronic energy + Delta-G solvation = -16341.241240 eV Core-core repulsion = 13659.354201 eV Total energy + Delta-G solvation = -2681.887039 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.81313 -38.02814 -36.03237 -34.81885 -32.12768 -30.97438 -29.37750 -24.95540 -24.46446 -22.66052 -21.89005 -20.41664 -19.57968 -17.90031 -17.19868 -16.12922 -15.94645 -15.10839 -14.60349 -14.14407 -13.74962 -13.51891 -13.48217 -13.16127 -12.40574 -12.17812 -12.08302 -11.67289 -11.59627 -11.46544 -10.90885 -10.72320 -10.62803 -10.51386 -10.02679 -9.84962 -9.82850 -9.67647 -9.05531 -8.76824 -6.87543 -6.01164 -2.98757 2.24115 3.02494 3.56624 3.61131 3.78324 4.57857 4.69325 4.74858 4.80861 5.17918 5.27933 5.34461 5.52363 5.55298 5.58201 5.71631 5.71927 5.89342 5.99460 6.03693 6.17436 6.26389 6.28108 6.40435 6.47749 6.61197 6.71519 6.91321 7.09918 7.90279 7.92332 8.85726 9.35307 10.21685 10.38144 11.47883 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.046272 B = 0.006071 C = 0.005990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.969931 B = 4610.840515 C = 4673.041076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.049 4.049 3 Si 1.081 2.919 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.327 4.327 8 H 0.063 0.937 9 N -0.742 5.742 10 C 0.166 3.834 11 C -0.109 4.109 12 H 0.093 0.907 13 C -0.112 4.112 14 C -0.124 4.124 15 C -0.109 4.109 16 C -0.076 4.076 17 H 0.105 0.895 18 C 0.478 3.522 19 O -0.498 6.498 20 O -0.522 6.522 21 C -0.097 4.097 22 H 0.254 0.746 23 H 0.366 0.634 24 H 0.017 0.983 25 H 0.016 0.984 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.406 0.594 33 H 0.070 0.930 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.337 -18.382 1.271 18.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.246 4.246 3 Si 0.912 3.088 4 H -0.211 1.211 5 H -0.224 1.224 6 H -0.224 1.224 7 C -0.459 4.459 8 H 0.081 0.919 9 N -0.388 5.388 10 C 0.039 3.961 11 C -0.128 4.128 12 H 0.111 0.889 13 C -0.149 4.149 14 C -0.162 4.162 15 C -0.146 4.146 16 C -0.095 4.095 17 H 0.123 0.877 18 C 0.320 3.680 19 O -0.385 6.385 20 O -0.334 6.334 21 C -0.135 4.135 22 H 0.065 0.935 23 H 0.200 0.800 24 H 0.035 0.965 25 H 0.034 0.966 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.264 0.736 33 H 0.088 0.912 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.048 -16.502 1.401 16.561 hybrid contribution -0.435 -1.628 -0.584 1.784 sum -0.387 -18.130 0.817 18.152 Atomic orbital electron populations 1.70867 1.06014 1.28331 1.54071 1.25763 0.97099 1.00942 1.00789 0.83231 0.74162 0.75633 0.75782 1.21078 1.22361 1.22351 1.20060 0.91995 0.85998 1.47814 0.91902 1.42380 1.04862 1.00964 1.90582 1.20559 0.93062 0.85067 0.97425 1.21603 0.98493 0.93847 0.98834 0.88895 1.21570 0.97666 0.97993 0.97700 1.21629 0.98200 0.94605 1.01738 1.21552 0.99164 0.98604 0.95300 1.21115 0.94841 1.02022 0.91558 0.87750 1.23608 0.79571 0.79005 0.85863 1.90740 1.70546 1.30973 1.46217 1.84528 1.43841 1.52560 1.52481 1.21454 0.96403 0.92880 1.02750 0.93481 0.80022 0.96518 0.96625 0.92146 0.91176 0.91585 0.92640 0.90327 0.91013 0.73562 0.91157 0.90508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -30.56 13.70 55.49 0.76 -29.80 16 2 C -0.05 -1.49 5.50 -17.43 -0.10 -1.58 16 3 Si 1.08 26.97 29.92 -169.99 -5.09 21.89 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.30 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.30 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.33 -9.80 9.99 -15.06 -0.15 -9.95 16 8 H 0.06 1.85 7.83 -52.49 -0.41 1.43 16 9 N -0.74 -20.10 5.33 -59.91 -0.32 -20.42 16 10 C 0.17 3.67 5.65 -4.04 -0.02 3.64 16 11 C -0.11 -1.94 1.93 -90.62 -0.18 -2.11 16 12 H 0.09 1.89 5.52 -51.93 -0.29 1.60 16 13 C -0.11 -1.82 5.08 -26.73 -0.14 -1.96 16 14 C -0.12 -1.61 5.70 -26.73 -0.15 -1.77 16 15 C -0.11 -1.13 5.39 -26.73 -0.14 -1.27 16 16 C -0.08 -0.86 3.11 -91.77 -0.29 -1.15 16 17 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 18 C 0.48 6.23 6.11 36.00 0.22 6.45 16 19 O -0.50 -8.50 14.42 -18.75 -0.27 -8.78 16 20 O -0.52 -5.24 13.33 -39.27 -0.52 -5.76 16 21 C -0.10 -1.33 4.37 -26.73 -0.12 -1.44 16 22 H 0.25 8.12 6.77 -40.82 -0.28 7.84 16 23 H 0.37 10.15 5.68 -40.82 -0.23 9.92 16 24 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.07 1.34 7.18 -51.93 -0.37 0.97 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.78 7.22 -51.93 -0.37 0.41 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.66 8.11 -51.93 -0.42 0.24 16 32 H 0.41 2.58 9.10 45.56 0.41 2.99 16 33 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 273.36 15.07 4.12 4.12 Total: -1.00 -35.45 273.36 -6.51 -41.96 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -4.14 Total: 7.93 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -1.06 Total: -11.14 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: 0.44 Total: -50.22 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.79 Total: -14.54 kcal Atomic # 14 Polarization: 26.97 SS G_CDS: -5.09 Total: 21.89 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -35.45 -6.51 -41.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713932713.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.462 kcal (2) G-P(sol) polarization free energy of solvation -35.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds