Wall clock time and date at job start Mon Mar 30 2020 02:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30680 * 1 3 3 Si 1.86797 * 120.00019 * 2 1 4 4 H 1.48493 * 109.47472 * 274.98307 * 3 2 1 5 5 H 1.48507 * 109.47176 * 34.98439 * 3 2 1 6 6 H 1.48507 * 109.46937 * 154.98074 * 3 2 1 7 7 C 1.40045 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99994 * 186.15139 * 7 2 1 9 9 C 1.46378 * 120.00019 * 6.14917 * 7 2 1 10 10 O 1.21689 * 119.99770 * 353.94016 * 9 7 2 11 11 N 1.34777 * 120.00092 * 173.93949 * 9 7 2 12 12 C 1.46498 * 120.00086 * 180.02562 * 11 9 7 13 13 C 1.52996 * 109.47328 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.47255 * 179.97438 * 13 12 11 15 15 O 1.42901 * 109.46726 * 179.97438 * 14 13 12 16 16 C 1.42901 * 113.99389 * 179.97438 * 15 14 13 17 17 C 1.53785 * 113.61186 * 210.00256 * 16 15 14 18 18 C 1.53785 * 87.17190 * 220.06517 * 17 16 15 19 19 C 1.53777 * 87.08133 * 25.38820 * 18 17 16 20 20 H 0.96998 * 119.99815 * 359.97438 * 1 2 3 21 21 H 0.97000 * 119.99574 * 0.02562 * 11 9 7 22 22 H 1.08995 * 109.47464 * 59.99741 * 12 11 9 23 23 H 1.09010 * 109.46858 * 300.00132 * 12 11 9 24 24 H 1.08995 * 109.47307 * 59.99342 * 13 12 11 25 25 H 1.09008 * 109.46569 * 300.00013 * 13 12 11 26 26 H 1.09000 * 109.47179 * 59.99813 * 14 13 12 27 27 H 1.08999 * 109.46594 * 299.99504 * 14 13 12 28 28 H 1.09004 * 112.91110 * 341.25258 * 16 15 14 29 29 H 1.08995 * 113.61852 * 105.47467 * 17 16 15 30 30 H 1.08995 * 113.61595 * 334.65037 * 17 16 15 31 31 H 1.08996 * 113.61934 * 139.93996 * 18 17 16 32 32 H 1.09003 * 113.61152 * 270.84071 * 18 17 16 33 33 H 1.08999 * 113.61206 * 89.11979 * 19 18 17 34 34 H 1.08998 * 113.61663 * 219.93337 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3830 2.1072 -1.3947 5 1 1.4949 2.6200 0.8028 6 1 3.5871 1.4120 0.5922 7 6 2.0070 -1.2128 -0.0005 8 1 3.0824 -1.2156 0.0997 9 6 1.2814 -2.4768 -0.1369 10 8 0.0646 -2.4826 -0.1389 11 7 1.9611 -3.6341 -0.2603 12 6 1.2349 -4.8990 -0.3973 13 6 2.2349 -6.0506 -0.5190 14 6 1.4764 -7.3717 -0.6614 15 8 2.4105 -8.4472 -0.7757 16 6 1.8023 -9.7329 -0.9136 17 6 2.6438 -10.8786 -0.3268 18 6 2.2231 -11.7118 -1.5489 19 6 2.0297 -10.3795 -2.2921 20 1 -0.4850 0.8400 0.0004 21 1 2.9311 -3.6294 -0.2584 22 1 0.6098 -4.8644 -1.2895 23 1 0.6072 -5.0545 0.4802 24 1 2.8596 -6.0851 0.3735 25 1 2.8629 -5.8952 -1.3963 26 1 0.8514 -7.3375 -1.5538 27 1 0.8488 -7.5268 0.2161 28 1 0.7610 -9.7466 -0.5913 29 1 2.2591 -11.2636 0.6176 30 1 3.7116 -10.6626 -0.2922 31 1 3.0261 -12.3263 -1.9559 32 1 1.2971 -12.2675 -1.4007 33 1 2.9294 -10.0259 -2.7957 34 1 1.1501 -10.3621 -2.9356 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717355050.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:21 Heat of formation + Delta-G solvation = -80.666963 kcal Electronic energy + Delta-G solvation = -15014.876750 eV Core-core repulsion = 12333.976467 eV Total energy + Delta-G solvation = -2680.900283 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.37401 -37.42378 -36.31004 -33.95941 -32.38297 -30.62757 -26.68613 -25.85642 -25.13656 -23.94120 -21.37375 -19.75405 -19.65100 -17.24701 -17.00239 -15.88933 -15.62950 -15.26772 -14.86154 -14.07125 -14.03667 -13.84903 -12.78882 -12.64733 -12.52716 -12.33323 -11.81389 -11.76079 -11.22179 -11.10206 -11.03910 -10.90205 -10.86823 -10.57780 -10.48521 -10.39952 -10.19136 -9.44161 -8.82791 -7.59762 -7.48064 -6.17502 -4.61405 3.15712 3.22622 3.26421 3.60657 4.13651 4.37917 4.42343 4.60897 4.64422 4.66029 4.97396 5.09878 5.16186 5.40758 5.46242 5.52475 5.56260 5.63537 5.70850 5.75279 5.75945 5.94786 5.96946 6.04476 6.15293 6.60010 6.60363 7.25618 7.46002 7.96094 8.12484 8.35998 9.04712 9.56355 10.62066 10.80571 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.091385 B = 0.003613 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 306.321294 B = 7748.529533 C = 7896.818637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.068 0.932 9 C 0.554 3.446 10 O -0.583 6.583 11 N -0.768 5.768 12 C 0.136 3.864 13 C -0.127 4.127 14 C 0.065 3.935 15 O -0.376 6.376 16 C 0.061 3.939 17 C -0.138 4.138 18 C -0.142 4.142 19 C -0.158 4.158 20 H 0.268 0.732 21 H 0.381 0.619 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.046 -18.011 -2.234 18.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.087 0.913 9 C 0.358 3.642 10 O -0.466 6.466 11 N -0.424 5.424 12 C 0.011 3.989 13 C -0.165 4.165 14 C -0.012 4.012 15 O -0.294 6.294 16 C 0.003 3.997 17 C -0.176 4.176 18 C -0.180 4.180 19 C -0.196 4.196 20 H 0.079 0.921 21 H 0.212 0.788 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.145 -17.879 -2.223 18.488 hybrid contribution 0.605 0.727 -0.042 0.947 sum 4.750 -17.152 -2.266 17.941 Atomic orbital electron populations 1.70036 1.07100 1.27228 1.35397 1.25718 0.94605 1.00329 0.92608 0.86349 0.80226 0.81448 0.78653 1.19816 1.20473 1.18877 1.20896 0.94130 0.89599 1.53724 0.91349 1.18236 0.87147 0.82418 0.76395 1.90592 1.14132 1.86493 1.55349 1.46110 1.08651 1.05699 1.81897 1.20712 0.93818 0.83897 1.00521 1.21705 0.99176 0.92364 1.03220 1.22482 0.91828 0.86737 1.00136 1.87931 1.33542 1.14316 1.93661 1.23732 0.96945 0.82859 0.96169 1.23211 1.01423 0.95017 0.97938 1.22654 1.01793 0.96260 0.97290 1.23511 1.02758 0.96004 0.97284 0.92142 0.78759 0.93346 0.93366 0.90984 0.90975 0.93128 0.93110 0.89632 0.91157 0.89203 0.90874 0.90095 0.89270 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.42 11.85 55.55 0.66 -22.76 16 2 C 0.09 2.47 5.49 -17.36 -0.10 2.37 16 3 Si 0.91 20.38 29.56 -169.99 -5.03 15.35 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.26 -5.73 7.11 56.52 0.40 -5.32 16 7 C -0.55 -15.74 9.53 -35.63 -0.34 -16.08 16 8 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 9 C 0.55 16.19 7.74 -12.99 -0.10 16.09 16 10 O -0.58 -19.33 15.05 5.20 0.08 -19.25 16 11 N -0.77 -17.69 5.55 -61.72 -0.34 -18.04 16 12 C 0.14 2.66 5.67 -4.04 -0.02 2.64 16 13 C -0.13 -1.90 5.70 -26.73 -0.15 -2.06 16 14 C 0.07 0.86 5.78 37.16 0.21 1.08 16 15 O -0.38 -5.01 10.36 -35.23 -0.36 -5.37 16 16 C 0.06 0.64 4.32 -25.83 -0.11 0.53 16 17 C -0.14 -1.23 7.91 -25.91 -0.20 -1.43 16 18 C -0.14 -1.08 8.08 -25.92 -0.21 -1.29 16 19 C -0.16 -1.44 7.92 -25.83 -0.20 -1.65 16 20 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 21 H 0.38 7.69 8.45 -40.82 -0.35 7.35 16 22 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.05 0.99 8.14 -51.92 -0.42 0.56 16 24 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.07 1.07 8.14 -51.92 -0.42 0.64 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.09 0.81 7.87 -51.93 -0.41 0.40 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 292.01 15.07 4.40 4.40 Total: -1.00 -34.56 292.01 -7.20 -41.76 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -5.37 Total: 3.71 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -1.23 Total: 0.20 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.32 Total: -40.80 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.29 Total: -24.62 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -34.56 -7.20 -41.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717355050.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.909 kcal (2) G-P(sol) polarization free energy of solvation -34.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds