Wall clock time and date at job start Mon Mar 30 2020 02:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30680 * 1 3 3 Si 1.86797 * 120.00019 * 2 1 4 4 H 1.48493 * 109.47472 * 274.98307 * 3 2 1 5 5 H 1.48507 * 109.47176 * 34.98439 * 3 2 1 6 6 H 1.48507 * 109.46937 * 154.98074 * 3 2 1 7 7 C 1.40045 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99994 * 186.15139 * 7 2 1 9 9 C 1.46378 * 120.00019 * 6.14917 * 7 2 1 10 10 O 1.21689 * 119.99770 * 353.94016 * 9 7 2 11 11 N 1.34777 * 120.00092 * 173.93949 * 9 7 2 12 12 C 1.46498 * 120.00086 * 180.02562 * 11 9 7 13 13 C 1.52996 * 109.47328 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.47255 * 179.97438 * 13 12 11 15 15 O 1.42901 * 109.46726 * 179.97438 * 14 13 12 16 16 C 1.42901 * 113.99389 * 179.97438 * 15 14 13 17 17 C 1.53785 * 113.61186 * 210.00256 * 16 15 14 18 18 C 1.53785 * 87.17190 * 220.06517 * 17 16 15 19 19 C 1.53777 * 87.08133 * 25.38820 * 18 17 16 20 20 H 0.96998 * 119.99815 * 359.97438 * 1 2 3 21 21 H 0.97000 * 119.99574 * 0.02562 * 11 9 7 22 22 H 1.08995 * 109.47464 * 59.99741 * 12 11 9 23 23 H 1.09010 * 109.46858 * 300.00132 * 12 11 9 24 24 H 1.08995 * 109.47307 * 59.99342 * 13 12 11 25 25 H 1.09008 * 109.46569 * 300.00013 * 13 12 11 26 26 H 1.09000 * 109.47179 * 59.99813 * 14 13 12 27 27 H 1.08999 * 109.46594 * 299.99504 * 14 13 12 28 28 H 1.09004 * 112.91110 * 341.25258 * 16 15 14 29 29 H 1.08995 * 113.61852 * 105.47467 * 17 16 15 30 30 H 1.08995 * 113.61595 * 334.65037 * 17 16 15 31 31 H 1.08996 * 113.61934 * 139.93996 * 18 17 16 32 32 H 1.09003 * 113.61152 * 270.84071 * 18 17 16 33 33 H 1.08999 * 113.61206 * 89.11979 * 19 18 17 34 34 H 1.08998 * 113.61663 * 219.93337 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3830 2.1072 -1.3947 5 1 1.4949 2.6200 0.8028 6 1 3.5871 1.4120 0.5922 7 6 2.0070 -1.2128 -0.0005 8 1 3.0824 -1.2156 0.0997 9 6 1.2814 -2.4768 -0.1369 10 8 0.0646 -2.4826 -0.1389 11 7 1.9611 -3.6341 -0.2603 12 6 1.2349 -4.8990 -0.3973 13 6 2.2349 -6.0506 -0.5190 14 6 1.4764 -7.3717 -0.6614 15 8 2.4105 -8.4472 -0.7757 16 6 1.8023 -9.7329 -0.9136 17 6 2.6438 -10.8786 -0.3268 18 6 2.2231 -11.7118 -1.5489 19 6 2.0297 -10.3795 -2.2921 20 1 -0.4850 0.8400 0.0004 21 1 2.9311 -3.6294 -0.2584 22 1 0.6098 -4.8644 -1.2895 23 1 0.6072 -5.0545 0.4802 24 1 2.8596 -6.0851 0.3735 25 1 2.8629 -5.8952 -1.3963 26 1 0.8514 -7.3375 -1.5538 27 1 0.8488 -7.5268 0.2161 28 1 0.7610 -9.7466 -0.5913 29 1 2.2591 -11.2636 0.6176 30 1 3.7116 -10.6626 -0.2922 31 1 3.0261 -12.3263 -1.9559 32 1 1.2971 -12.2675 -1.4007 33 1 2.9294 -10.0259 -2.7957 34 1 1.1501 -10.3621 -2.9356 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717355050.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:20 Heat of formation + Delta-G solvation = -105.560050 kcal Electronic energy + Delta-G solvation = -15015.956195 eV Core-core repulsion = 12333.976467 eV Total energy + Delta-G solvation = -2681.979728 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.20288 -39.44525 -37.39683 -35.68093 -34.54666 -32.27786 -28.67169 -26.59000 -26.34728 -25.05780 -22.72570 -21.73796 -20.50490 -19.15316 -18.08427 -17.44489 -17.02193 -16.47616 -16.21149 -15.87251 -15.49507 -15.20412 -14.31694 -14.22223 -13.69310 -13.35731 -13.17306 -13.04700 -12.87913 -12.76212 -12.59160 -12.24206 -12.11225 -12.00037 -11.88832 -11.51854 -11.28501 -10.93577 -10.34933 -9.89895 -9.51391 -8.31065 -6.86423 1.40989 1.42271 1.58571 2.24457 2.45791 2.58019 3.26821 3.59162 3.67512 3.72943 3.94018 3.95292 4.02345 4.11389 4.27448 4.44774 4.55258 4.58826 4.69283 4.83394 4.85827 5.03527 5.04537 5.13734 5.14967 5.24607 5.32040 5.41836 5.86815 6.20520 6.25402 6.34417 6.85838 7.53097 8.47062 8.65900 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.091385 B = 0.003613 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 306.321294 B = 7748.529533 C = 7896.818637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.027 3.973 3 Si 1.002 2.998 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.248 1.248 7 C -0.575 4.575 8 H 0.089 0.911 9 C 0.535 3.465 10 O -0.634 6.634 11 N -0.756 5.756 12 C 0.138 3.862 13 C -0.110 4.110 14 C 0.070 3.930 15 O -0.392 6.392 16 C 0.045 3.955 17 C -0.139 4.139 18 C -0.131 4.131 19 C -0.160 4.160 20 H 0.275 0.725 21 H 0.397 0.603 22 H 0.035 0.965 23 H 0.036 0.964 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.625 -18.361 -2.324 19.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.188 4.188 3 Si 0.821 3.179 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.171 1.171 7 C -0.611 4.611 8 H 0.107 0.893 9 C 0.340 3.660 10 O -0.522 6.522 11 N -0.411 5.411 12 C 0.013 3.987 13 C -0.148 4.148 14 C -0.007 4.007 15 O -0.311 6.311 16 C -0.013 4.013 17 C -0.176 4.176 18 C -0.168 4.168 19 C -0.198 4.198 20 H 0.085 0.915 21 H 0.231 0.769 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.113 0.887 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.098 0.902 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.775 -18.290 -2.318 19.319 hybrid contribution 0.102 0.737 -0.015 0.744 sum 5.877 -17.553 -2.333 18.657 Atomic orbital electron populations 1.70198 1.09625 1.29038 1.36355 1.27031 0.95550 1.05112 0.91139 0.84954 0.78883 0.74902 0.79193 1.18752 1.19692 1.17080 1.21452 0.95308 0.90250 1.54123 0.89292 1.18663 0.86810 0.84346 0.76221 1.90544 1.16254 1.87632 1.57770 1.45805 1.09459 1.05587 1.80287 1.20783 0.94612 0.83982 0.99333 1.21492 0.98000 0.91498 1.03791 1.22347 0.91579 0.86104 1.00701 1.87894 1.34063 1.15251 1.93906 1.24094 0.97760 0.81872 0.97544 1.23228 1.00788 0.94564 0.99036 1.22650 1.02766 0.95578 0.95855 1.23518 1.02626 0.96859 0.96801 0.91495 0.76948 0.94630 0.94554 0.90307 0.90386 0.92715 0.92476 0.88706 0.90172 0.89922 0.89889 0.88659 0.90160 0.90796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.10 11.85 21.84 0.26 -50.84 16 2 C 0.03 1.51 5.49 85.30 0.47 1.97 16 3 Si 1.00 41.28 29.56 68.60 2.03 43.31 16 4 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 6 H -0.25 -9.43 7.11 99.48 0.71 -8.73 16 7 C -0.57 -33.16 9.53 24.83 0.24 -32.93 16 8 H 0.09 4.59 7.85 -2.91 -0.02 4.56 16 9 C 0.54 31.92 7.74 86.36 0.67 32.59 16 10 O -0.63 -43.60 15.05 -4.31 -0.06 -43.67 16 11 N -0.76 -35.04 5.55 -467.41 -2.59 -37.63 16 12 C 0.14 5.43 5.67 86.38 0.49 5.92 16 13 C -0.11 -3.20 5.70 30.59 0.17 -3.02 16 14 C 0.07 1.78 5.78 71.98 0.42 2.20 16 15 O -0.39 -9.97 10.36 -148.98 -1.54 -11.51 16 16 C 0.04 0.87 4.32 31.18 0.13 1.01 16 17 C -0.14 -2.22 7.91 31.12 0.25 -1.97 16 18 C -0.13 -1.69 8.08 31.12 0.25 -1.44 16 19 C -0.16 -2.69 7.92 31.18 0.25 -2.44 16 20 H 0.28 15.39 8.29 -92.71 -0.77 14.62 16 21 H 0.40 15.73 8.45 -92.71 -0.78 14.95 16 22 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 24 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 26 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.10 1.64 7.87 -2.38 -0.02 1.62 16 29 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.08 0.92 8.14 -2.39 -0.02 0.91 16 32 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -75.90 292.01 1.71 -74.19 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.29 Total: 24.28 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 3.33 Total: 1.88 kcal Atomic # 7 Polarization: -86.14 SS G_CDS: -2.34 Total: -88.47 kcal Atomic # 8 Polarization: -53.57 SS G_CDS: -1.61 Total: -55.18 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -75.90 1.71 -74.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717355050.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.372 kcal (2) G-P(sol) polarization free energy of solvation -75.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds