Wall clock time and date at job start Mon Mar 30 2020 02:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36935 * 119.99683 * 2 1 4 4 H 1.07999 * 119.99477 * 154.61192 * 3 2 1 5 5 C 1.38818 * 120.00135 * 334.61485 * 3 2 1 6 6 N 1.31618 * 119.99903 * 3.92510 * 5 3 2 7 7 Si 1.86800 * 119.99547 * 183.92244 * 5 3 2 8 8 H 1.48493 * 109.47192 * 60.00281 * 7 5 3 9 9 H 1.48503 * 109.46739 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47316 * 299.99485 * 7 5 3 11 11 C 1.46497 * 119.99850 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47101 * 89.99984 * 11 2 1 13 13 C 1.53866 * 113.59800 * 274.18894 * 12 11 2 14 14 C 1.53503 * 86.87094 * 220.37932 * 13 12 11 15 15 C 1.52596 * 120.61439 * 149.62259 * 14 13 12 16 16 S 1.81499 * 89.76995 * 93.86020 * 15 14 13 17 17 C 1.52594 * 120.49626 * 260.60375 * 14 13 12 18 18 C 1.53327 * 87.60303 * 25.08982 * 14 13 12 19 19 H 1.09001 * 109.47117 * 84.46697 * 1 2 3 20 20 H 1.08995 * 109.47097 * 324.46440 * 1 2 3 21 21 H 1.09008 * 109.46847 * 204.46544 * 1 2 3 22 22 H 0.96996 * 119.99876 * 180.02562 * 6 5 3 23 23 H 1.08998 * 109.46794 * 209.99411 * 11 2 1 24 24 H 1.08997 * 109.47463 * 329.99858 * 11 2 1 25 25 H 1.08998 * 112.83756 * 45.33178 * 12 11 2 26 26 H 1.09000 * 113.64107 * 334.85889 * 13 12 11 27 27 H 1.09005 * 113.64004 * 105.84332 * 13 12 11 28 28 H 1.08997 * 113.16859 * 209.08780 * 15 14 13 29 29 H 1.09000 * 113.16157 * 338.63771 * 15 14 13 30 30 H 1.09003 * 113.16665 * 21.27043 * 17 14 13 31 31 H 1.08998 * 113.16437 * 150.76625 * 17 14 13 32 32 H 1.08994 * 113.63867 * 220.40290 * 18 14 13 33 33 H 1.08995 * 113.71786 * 89.43312 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1514 1.2311 0.4010 5 6 1.5560 2.3301 -0.5154 6 7 0.3084 2.2931 -0.9330 7 14 2.5281 3.9221 -0.6161 8 1 3.7222 3.7194 -1.4751 9 1 1.6735 4.9877 -1.1988 10 1 2.9607 4.3250 0.7462 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7097 -1.4433 13 6 1.2887 -2.5063 -2.0587 14 6 2.3542 -3.4112 -2.6929 15 6 2.0639 -4.8856 -2.9578 16 16 1.5529 -4.4734 -4.6499 17 6 2.7657 -3.2192 -4.1497 18 6 3.2937 -2.9933 -1.5555 19 1 -0.3633 0.0991 -1.0229 20 1 -0.3633 0.8362 0.5973 21 1 -0.3633 -0.9355 0.4256 22 1 -0.1062 3.0925 -1.2934 23 1 3.1499 -1.1386 0.5132 24 1 1.6085 -2.0286 0.5129 25 1 2.8088 -0.8978 -2.0771 26 1 0.6677 -3.0136 -1.3204 27 1 0.7069 -1.9391 -2.7854 28 1 2.9552 -5.5118 -2.9195 29 1 1.2504 -5.2787 -2.3480 30 1 2.5368 -2.2246 -4.5325 31 1 3.7961 -3.5152 -4.3467 32 1 4.3195 -2.8166 -1.8786 33 1 3.2310 -3.6351 -0.6768 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718278593.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:48 Heat of formation + Delta-G solvation = 63.903224 kcal Electronic energy + Delta-G solvation = -14101.846126 eV Core-core repulsion = 11869.967748 eV Total energy + Delta-G solvation = -2231.878378 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.56378 -35.43496 -32.67738 -30.67341 -26.46555 -26.34236 -25.68094 -25.32578 -21.74011 -19.78966 -18.08878 -16.65784 -16.34339 -15.16887 -14.98992 -14.68856 -14.13129 -13.48369 -13.19536 -13.01691 -12.39514 -12.07895 -11.87075 -11.68869 -11.32295 -10.94207 -10.82299 -10.59313 -10.43654 -10.27229 -10.09975 -9.98950 -9.81029 -9.64151 -9.41690 -8.45161 -7.71739 -6.64854 -5.68038 -3.13642 1.87703 2.00995 3.40515 3.46066 3.46495 4.32505 4.50873 4.55128 5.01676 5.07557 5.26571 5.29551 5.44761 5.50720 5.61007 5.69999 5.79359 5.96198 6.07357 6.09483 6.38143 6.41914 6.56210 6.71154 6.82781 6.89668 7.14491 7.55677 7.82240 7.92020 8.48867 9.32401 9.94755 10.44896 11.36726 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.039998 B = 0.006526 C = 0.006380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.871879 B = 4289.609453 C = 4387.734239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.169 3.831 2 N -0.605 5.605 3 C -0.252 4.252 4 H 0.067 0.933 5 C 0.004 3.996 6 N -0.910 5.910 7 Si 0.901 3.099 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.284 1.284 11 C 0.163 3.837 12 C -0.119 4.119 13 C -0.091 4.091 14 C -0.094 4.094 15 C -0.065 4.065 16 S -0.312 6.312 17 C -0.053 4.053 18 C -0.117 4.117 19 H 0.024 0.976 20 H 0.049 0.951 21 H -0.011 1.011 22 H 0.252 0.748 23 H 0.042 0.958 24 H 0.036 0.964 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.065 0.935 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.510 -12.044 -2.517 13.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.328 5.328 3 C -0.382 4.382 4 H 0.084 0.916 5 C -0.194 4.194 6 N -0.555 5.555 7 Si 0.731 3.269 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.211 1.211 11 C 0.035 3.965 12 C -0.140 4.140 13 C -0.129 4.129 14 C -0.096 4.096 15 C -0.213 4.213 16 S -0.085 6.085 17 C -0.201 4.201 18 C -0.157 4.157 19 H 0.043 0.957 20 H 0.068 0.932 21 H 0.007 0.993 22 H 0.062 0.938 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.109 0.891 26 H 0.100 0.900 27 H 0.089 0.911 28 H 0.118 0.882 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.084 0.916 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.491 -12.323 -3.695 13.331 hybrid contribution 1.144 1.172 0.424 1.691 sum 4.635 -11.152 -3.271 12.512 Atomic orbital electron populations 1.20837 0.82469 0.95011 0.99209 1.43902 1.01939 1.00595 1.86348 1.19159 0.99147 0.86491 1.33384 0.91571 1.25147 0.96564 0.98646 0.99006 1.70073 1.11270 1.27918 1.46259 0.86391 0.79339 0.83350 0.77812 1.21063 1.21675 1.21091 1.20792 0.95456 0.88108 0.92113 1.23231 0.94552 0.94783 1.01429 1.22724 0.95569 0.95666 0.98912 1.22663 1.01022 0.92212 0.93684 1.24284 1.03519 1.00475 0.93046 1.88842 1.56573 1.38978 1.24102 1.24068 0.99175 1.00989 0.95882 1.22926 0.97542 0.98780 0.96488 0.95746 0.93242 0.99293 0.93781 0.93930 0.94541 0.89093 0.90047 0.91138 0.88220 0.88867 0.88444 0.87986 0.91637 0.89782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.21 8.99 59.85 0.54 4.75 16 2 N -0.60 -15.04 2.93 -181.12 -0.53 -15.57 16 3 C -0.25 -6.87 9.67 -15.06 -0.15 -7.02 16 4 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 5 C 0.00 0.12 5.38 -17.43 -0.09 0.02 16 6 N -0.91 -26.47 10.13 55.49 0.56 -25.91 16 7 Si 0.90 21.80 29.56 -169.99 -5.02 16.78 16 8 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 9 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 C 0.16 3.21 5.53 -4.04 -0.02 3.19 16 12 C -0.12 -2.05 3.96 -89.72 -0.36 -2.40 16 13 C -0.09 -1.46 7.35 -26.02 -0.19 -1.65 16 14 C -0.09 -1.24 0.93 -154.49 -0.14 -1.38 16 15 C -0.06 -0.76 7.69 36.95 0.28 -0.48 16 16 S -0.31 -4.39 24.79 -107.50 -2.66 -7.05 16 17 C -0.05 -0.68 7.69 36.95 0.28 -0.40 16 18 C -0.12 -1.52 7.36 -26.11 -0.19 -1.71 16 19 H 0.02 0.65 7.43 -51.93 -0.39 0.26 16 20 H 0.05 1.34 7.04 -51.93 -0.37 0.98 16 21 H -0.01 -0.25 7.83 -51.92 -0.41 -0.66 16 22 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 23 H 0.04 0.82 8.04 -51.93 -0.42 0.41 16 24 H 0.04 0.66 7.59 -51.93 -0.39 0.27 16 25 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 26 H 0.08 1.26 7.92 -51.93 -0.41 0.85 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 LS Contribution 280.35 15.07 4.22 4.22 Total: -1.00 -29.05 280.35 -8.78 -37.83 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -5.31 Total: -3.22 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -0.04 Total: -7.08 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.03 Total: -41.47 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: -4.39 SS G_CDS: -2.66 Total: -7.05 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.05 -8.78 -37.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718278593.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.734 kcal (2) G-P(sol) polarization free energy of solvation -29.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds