Wall clock time and date at job start Mon Mar 30 2020 02:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36935 * 119.99683 * 2 1 4 4 H 1.07999 * 119.99477 * 154.61192 * 3 2 1 5 5 C 1.38818 * 120.00135 * 334.61485 * 3 2 1 6 6 N 1.31618 * 119.99903 * 3.92510 * 5 3 2 7 7 Si 1.86800 * 119.99547 * 183.92244 * 5 3 2 8 8 H 1.48493 * 109.47192 * 60.00281 * 7 5 3 9 9 H 1.48503 * 109.46739 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47316 * 299.99485 * 7 5 3 11 11 C 1.46497 * 119.99850 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47101 * 89.99984 * 11 2 1 13 13 C 1.53866 * 113.59800 * 274.18894 * 12 11 2 14 14 C 1.53503 * 86.87094 * 220.37932 * 13 12 11 15 15 C 1.52596 * 120.61439 * 149.62259 * 14 13 12 16 16 S 1.81499 * 89.76995 * 93.86020 * 15 14 13 17 17 C 1.52594 * 120.49626 * 260.60375 * 14 13 12 18 18 C 1.53327 * 87.60303 * 25.08982 * 14 13 12 19 19 H 1.09001 * 109.47117 * 84.46697 * 1 2 3 20 20 H 1.08995 * 109.47097 * 324.46440 * 1 2 3 21 21 H 1.09008 * 109.46847 * 204.46544 * 1 2 3 22 22 H 0.96996 * 119.99876 * 180.02562 * 6 5 3 23 23 H 1.08998 * 109.46794 * 209.99411 * 11 2 1 24 24 H 1.08997 * 109.47463 * 329.99858 * 11 2 1 25 25 H 1.08998 * 112.83756 * 45.33178 * 12 11 2 26 26 H 1.09000 * 113.64107 * 334.85889 * 13 12 11 27 27 H 1.09005 * 113.64004 * 105.84332 * 13 12 11 28 28 H 1.08997 * 113.16859 * 209.08780 * 15 14 13 29 29 H 1.09000 * 113.16157 * 338.63771 * 15 14 13 30 30 H 1.09003 * 113.16665 * 21.27043 * 17 14 13 31 31 H 1.08998 * 113.16437 * 150.76625 * 17 14 13 32 32 H 1.08994 * 113.63867 * 220.40290 * 18 14 13 33 33 H 1.08995 * 113.71786 * 89.43312 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1514 1.2311 0.4010 5 6 1.5560 2.3301 -0.5154 6 7 0.3084 2.2931 -0.9330 7 14 2.5281 3.9221 -0.6161 8 1 3.7222 3.7194 -1.4751 9 1 1.6735 4.9877 -1.1988 10 1 2.9607 4.3250 0.7462 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7097 -1.4433 13 6 1.2887 -2.5063 -2.0587 14 6 2.3542 -3.4112 -2.6929 15 6 2.0639 -4.8856 -2.9578 16 16 1.5529 -4.4734 -4.6499 17 6 2.7657 -3.2192 -4.1497 18 6 3.2937 -2.9933 -1.5555 19 1 -0.3633 0.0991 -1.0229 20 1 -0.3633 0.8362 0.5973 21 1 -0.3633 -0.9355 0.4256 22 1 -0.1062 3.0925 -1.2934 23 1 3.1499 -1.1386 0.5132 24 1 1.6085 -2.0286 0.5129 25 1 2.8088 -0.8978 -2.0771 26 1 0.6677 -3.0136 -1.3204 27 1 0.7069 -1.9391 -2.7854 28 1 2.9552 -5.5118 -2.9195 29 1 1.2504 -5.2787 -2.3480 30 1 2.5368 -2.2246 -4.5325 31 1 3.7961 -3.5152 -4.3467 32 1 4.3195 -2.8166 -1.8786 33 1 3.2310 -3.6351 -0.6768 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718278593.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:47 Heat of formation + Delta-G solvation = 48.397821 kcal Electronic energy + Delta-G solvation = -14102.518491 eV Core-core repulsion = 11869.967748 eV Total energy + Delta-G solvation = -2232.550743 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.76546 -37.26576 -34.15687 -32.50142 -28.22267 -27.60846 -27.32189 -26.55034 -23.54925 -21.30894 -19.21945 -18.67566 -17.43663 -16.88999 -16.21173 -16.05937 -15.52564 -15.27931 -14.87476 -14.12782 -13.95859 -13.49668 -13.28435 -13.04226 -12.84525 -12.72312 -12.55961 -12.27660 -12.05610 -11.97405 -11.86020 -11.45345 -11.20623 -11.05948 -10.65736 -10.53097 -8.81832 -8.65333 -7.79141 -5.25594 0.88438 0.99534 1.47116 1.49003 1.55315 2.53313 3.25071 3.36694 3.45689 3.76482 3.89803 4.00710 4.16747 4.40392 4.47626 4.51953 4.69658 4.73149 4.85492 4.94670 4.95527 5.01482 5.05162 5.15857 5.33896 5.46807 5.49272 5.66564 5.74192 5.84746 6.41022 7.22951 7.96705 8.40313 9.24569 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.039998 B = 0.006526 C = 0.006380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.871879 B = 4289.609453 C = 4387.734239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.186 3.814 2 N -0.622 5.622 3 C -0.257 4.257 4 H 0.072 0.928 5 C -0.054 4.054 6 N -0.941 5.941 7 Si 0.964 3.036 8 H -0.277 1.277 9 H -0.298 1.298 10 H -0.276 1.276 11 C 0.159 3.841 12 C -0.124 4.124 13 C -0.094 4.094 14 C -0.086 4.086 15 C -0.041 4.041 16 S -0.370 6.370 17 C -0.045 4.045 18 C -0.092 4.092 19 H -0.004 1.004 20 H 0.018 0.982 21 H 0.021 0.979 22 H 0.245 0.755 23 H 0.048 0.952 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.090 0.910 27 H 0.036 0.964 28 H 0.130 0.870 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.130 0.870 32 H 0.082 0.918 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.411 -13.829 -1.793 15.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.346 5.346 3 C -0.388 4.388 4 H 0.089 0.911 5 C -0.248 4.248 6 N -0.589 5.589 7 Si 0.793 3.207 8 H -0.203 1.203 9 H -0.224 1.224 10 H -0.202 1.202 11 C 0.034 3.966 12 C -0.145 4.145 13 C -0.132 4.132 14 C -0.088 4.088 15 C -0.189 4.189 16 S -0.144 6.144 17 C -0.193 4.193 18 C -0.132 4.132 19 H 0.014 0.986 20 H 0.036 0.964 21 H 0.039 0.961 22 H 0.054 0.946 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.108 0.892 27 H 0.055 0.945 28 H 0.149 0.851 29 H 0.121 0.879 30 H 0.098 0.902 31 H 0.148 0.852 32 H 0.101 0.899 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.423 -14.143 -2.962 15.434 hybrid contribution 0.547 1.689 0.244 1.792 sum 5.970 -12.453 -2.718 14.076 Atomic orbital electron populations 1.20507 0.83051 0.95215 0.97118 1.44156 1.02007 1.01900 1.86531 1.19516 0.99226 0.87629 1.32379 0.91055 1.25884 0.97460 1.01927 0.99557 1.70268 1.12679 1.28202 1.47712 0.85384 0.77910 0.79449 0.77993 1.20340 1.22405 1.20181 1.21004 0.95390 0.86379 0.93864 1.22981 0.96863 0.95792 0.98893 1.22689 0.95648 0.96160 0.98674 1.22460 0.99501 0.93077 0.93745 1.24314 1.04943 0.99388 0.90244 1.89147 1.57824 1.40336 1.27055 1.24160 1.00067 0.99595 0.95448 1.22827 0.97589 0.95683 0.97102 0.98564 0.96360 0.96084 0.94581 0.93399 0.92432 0.92711 0.89171 0.94481 0.85145 0.87919 0.90250 0.85231 0.89942 0.87247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.40 8.99 127.77 1.15 10.55 16 2 N -0.62 -30.91 2.93 -726.93 -2.13 -33.04 16 3 C -0.26 -14.06 9.67 84.04 0.81 -13.25 16 4 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 5 C -0.05 -3.05 5.38 84.86 0.46 -2.59 16 6 N -0.94 -56.48 10.13 21.65 0.22 -56.26 16 7 Si 0.96 45.32 29.56 68.60 2.03 47.35 16 8 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 9 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 C 0.16 6.00 5.53 86.38 0.48 6.47 16 12 C -0.12 -4.12 3.96 -10.21 -0.04 -4.16 16 13 C -0.09 -2.92 7.35 31.06 0.23 -2.69 16 14 C -0.09 -2.02 0.93 -52.17 -0.05 -2.07 16 15 C -0.04 -0.81 7.69 71.85 0.55 -0.26 16 16 S -0.37 -9.92 24.79 -56.49 -1.40 -11.32 16 17 C -0.04 -1.07 7.69 71.85 0.55 -0.52 16 18 C -0.09 -2.02 7.36 31.00 0.23 -1.79 16 19 H 0.00 -0.22 7.43 -2.39 -0.02 -0.24 16 20 H 0.02 1.00 7.04 -2.39 -0.02 0.98 16 21 H 0.02 0.90 7.83 -2.38 -0.02 0.88 16 22 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 23 H 0.05 1.74 8.04 -2.39 -0.02 1.72 16 24 H 0.06 1.92 7.59 -2.39 -0.02 1.90 16 25 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.09 2.61 7.92 -2.39 -0.02 2.59 16 27 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.11 1.96 8.10 -2.39 -0.02 1.94 16 Total: -1.00 -64.33 280.35 4.15 -60.19 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: 1.06 Total: 3.40 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: 4.37 Total: -10.32 kcal Atomic # 7 Polarization: -87.39 SS G_CDS: -1.91 Total: -89.30 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Atomic # 16 Polarization: -9.92 SS G_CDS: -1.40 Total: -11.32 kcal Total: -64.33 4.15 -60.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718278593.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.585 kcal (2) G-P(sol) polarization free energy of solvation -64.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds