Wall clock time and date at job start Mon Mar 30 2020 03:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00014 * 2 1 4 4 H 1.48502 * 109.47020 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47171 * 299.99797 * 3 2 1 6 6 H 1.48500 * 109.47152 * 59.99959 * 3 2 1 7 7 C 1.37874 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99934 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00458 * 0.02562 * 7 2 1 10 10 O 1.42902 * 109.47284 * 179.97438 * 9 7 2 11 11 C 1.42905 * 113.99778 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47084 * 180.02562 * 11 10 9 13 13 N 1.46906 * 109.47119 * 64.99770 * 12 11 10 14 14 C 1.48516 * 111.04442 * 60.57323 * 13 12 11 15 15 C 1.56009 * 104.99162 * 122.95003 * 14 13 12 16 16 H 1.08993 * 116.76025 * 159.07550 * 15 14 13 17 17 C 1.57067 * 99.74027 * 32.83198 * 15 14 13 18 18 C 1.49791 * 111.00085 * 177.80529 * 13 12 11 19 19 H 1.09001 * 117.07881 * 74.54628 * 18 13 12 20 20 C 1.56104 * 103.75374 * 304.61666 * 18 13 12 21 21 O 1.44120 * 105.40208 * 288.51942 * 20 18 13 22 22 H 0.96996 * 120.00253 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.46675 * 59.99661 * 9 7 2 24 24 H 1.08996 * 109.47104 * 300.00384 * 9 7 2 25 25 H 1.08999 * 109.46758 * 60.00146 * 11 10 9 26 26 H 1.09003 * 109.46830 * 300.00215 * 11 10 9 27 27 H 1.08998 * 109.47370 * 305.00100 * 12 11 10 28 28 H 1.08999 * 109.47067 * 185.00097 * 12 11 10 29 29 H 1.09000 * 110.38819 * 4.04596 * 14 13 12 30 30 H 1.08994 * 110.37363 * 241.84837 * 14 13 12 31 31 H 1.08998 * 112.44834 * 191.26328 * 17 15 14 32 32 H 1.09004 * 112.45302 * 63.68320 * 17 15 14 33 33 H 1.08998 * 110.26414 * 47.50331 * 20 18 13 34 34 H 1.09008 * 110.25987 * 169.45206 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5650 -4.8755 0.0000 12 6 2.6479 -5.9562 0.0006 13 7 3.4071 -5.8879 1.2565 14 6 2.5226 -6.1162 2.4275 15 6 3.1516 -7.3308 3.1777 16 1 2.8852 -7.4506 4.2277 17 6 4.6704 -7.0769 2.8680 18 6 4.4440 -6.9673 1.3163 19 1 5.3321 -6.8370 0.6979 20 6 3.6271 -8.2792 1.0964 21 8 2.8726 -8.4682 2.3096 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6240 -2.5567 0.8902 25 1 0.9452 -4.9822 -0.8903 26 1 0.9446 -4.9827 0.8897 27 1 3.3221 -5.7956 -0.8406 28 1 2.1820 -6.9375 -0.0894 29 1 1.5116 -6.3564 2.0986 30 1 2.5118 -5.2372 3.0719 31 1 5.2979 -7.9262 3.1381 32 1 5.0338 -6.1456 3.3023 33 1 2.9537 -8.1667 0.2468 34 1 4.3009 -9.1207 0.9344 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718300780.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:38 Heat of formation + Delta-G solvation = -51.818747 kcal Electronic energy + Delta-G solvation = -16111.882262 eV Core-core repulsion = 13432.232931 eV Total energy + Delta-G solvation = -2679.649331 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.15319 -36.84159 -34.87306 -32.71118 -31.43934 -30.03344 -27.95243 -26.43458 -24.86668 -22.43253 -22.10202 -21.25793 -19.23298 -17.04994 -16.82560 -16.37151 -15.85024 -15.24988 -14.79958 -14.39432 -13.96344 -13.38417 -13.12215 -12.72411 -12.61616 -12.19388 -11.97503 -11.74259 -11.59314 -11.37410 -11.15977 -11.05300 -10.75355 -10.71068 -10.41551 -9.94746 -9.57267 -9.03565 -8.77041 -8.11442 -8.08319 -6.07302 -4.08233 3.31587 3.37848 3.44997 3.56717 3.94122 4.19639 4.37697 4.45846 4.66996 4.79914 4.86978 5.20037 5.28889 5.29262 5.42755 5.54325 5.58917 5.62943 5.67839 5.79922 5.89252 6.00118 6.04546 6.13276 6.30873 6.57001 6.85621 7.11048 7.17149 7.47288 7.84791 8.20675 8.65109 9.06815 9.56618 11.04506 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.050723 B = 0.005339 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.889921 B = 5243.511816 C = 5389.235090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.510 4.510 8 H 0.067 0.933 9 C 0.193 3.807 10 O -0.380 6.380 11 C 0.066 3.934 12 C 0.042 3.958 13 N -0.495 5.495 14 C 0.011 3.989 15 C 0.048 3.952 16 H 0.139 0.861 17 C -0.154 4.154 18 C 0.029 3.971 19 H 0.132 0.868 20 C 0.003 3.997 21 O -0.383 6.383 22 H 0.263 0.737 23 H 0.002 0.998 24 H 0.003 0.997 25 H 0.040 0.960 26 H 0.036 0.964 27 H 0.084 0.916 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.716 -15.531 4.078 17.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.548 4.548 8 H 0.085 0.915 9 C 0.119 3.881 10 O -0.300 6.300 11 C -0.012 4.012 12 C -0.086 4.086 13 N -0.219 5.219 14 C -0.117 4.117 15 C -0.009 4.009 16 H 0.156 0.844 17 C -0.192 4.192 18 C -0.080 4.080 19 H 0.150 0.850 20 C -0.075 4.075 21 O -0.302 6.302 22 H 0.072 0.928 23 H 0.020 0.980 24 H 0.021 0.979 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.102 0.898 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.115 0.885 33 H 0.099 0.901 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.840 -15.012 4.113 17.001 hybrid contribution -0.355 0.237 -0.212 0.477 sum 6.485 -14.774 3.902 16.600 Atomic orbital electron populations 1.69976 1.06115 1.26955 1.50969 1.24953 0.94959 0.99426 0.95269 0.86291 0.80073 0.82638 0.77562 1.19456 1.20902 1.20876 1.21105 0.94126 0.89324 1.50223 0.91463 1.20186 0.88869 0.83936 0.95105 1.87952 1.34664 1.12315 1.95025 1.22290 0.93738 0.86231 0.98972 1.22519 0.96631 0.96605 0.92853 1.65159 1.11921 1.42810 1.02003 1.23966 0.96313 0.97909 0.93529 1.25168 0.94483 0.85920 0.95337 0.84384 1.24283 0.96650 1.03160 0.95091 1.25095 0.96307 0.89137 0.97426 0.85033 1.24345 0.95834 0.98744 0.88551 1.89069 1.68315 1.44726 1.28115 0.92789 0.98012 0.97942 0.94190 0.94566 0.89777 0.93208 0.91448 0.89123 0.89809 0.88506 0.90147 0.91149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 22.16 29.54 -169.99 -5.02 17.14 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.51 -15.34 9.43 -34.44 -0.32 -15.66 16 8 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 9 C 0.19 5.45 5.69 36.01 0.20 5.65 16 10 O -0.38 -9.46 10.27 -35.23 -0.36 -9.83 16 11 C 0.07 1.26 5.92 37.15 0.22 1.48 16 12 C 0.04 0.65 4.78 -3.82 -0.02 0.63 16 13 N -0.49 -7.61 5.31 -216.37 -1.15 -8.76 16 14 C 0.01 0.15 5.47 -1.32 -0.01 0.15 16 15 C 0.05 0.56 5.97 -22.92 -0.14 0.43 16 16 H 0.14 1.28 8.14 -51.93 -0.42 0.85 16 17 C -0.15 -1.64 6.86 -22.25 -0.15 -1.79 16 18 C 0.03 0.34 5.34 -62.16 -0.33 0.01 16 19 H 0.13 1.36 8.14 -51.93 -0.42 0.94 16 20 C 0.00 0.04 6.81 38.82 0.26 0.30 16 21 O -0.38 -5.11 11.24 -35.23 -0.40 -5.50 16 22 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 23 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 24 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.04 0.69 6.42 -51.93 -0.33 0.35 16 27 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.05 0.68 5.44 -51.93 -0.28 0.39 16 29 H 0.07 1.00 6.50 -51.93 -0.34 0.66 16 30 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.08 0.94 5.18 -51.93 -0.27 0.67 16 34 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 LS Contribution 273.78 15.07 4.13 4.13 Total: -1.00 -32.92 273.78 -7.44 -40.36 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -4.99 Total: -3.60 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -0.38 Total: -7.30 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: -0.41 Total: -35.40 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.76 Total: -15.33 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -32.92 -7.44 -40.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718300780.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.462 kcal (2) G-P(sol) polarization free energy of solvation -32.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds