Wall clock time and date at job start Mon Mar 30 2020 03:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00014 * 2 1 4 4 H 1.48502 * 109.47020 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47171 * 299.99797 * 3 2 1 6 6 H 1.48500 * 109.47152 * 59.99959 * 3 2 1 7 7 C 1.37874 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99934 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00458 * 0.02562 * 7 2 1 10 10 O 1.42902 * 109.47284 * 179.97438 * 9 7 2 11 11 C 1.42905 * 113.99778 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47084 * 180.02562 * 11 10 9 13 13 N 1.46906 * 109.47119 * 64.99770 * 12 11 10 14 14 C 1.48516 * 111.04442 * 60.57323 * 13 12 11 15 15 C 1.56009 * 104.99162 * 122.95003 * 14 13 12 16 16 H 1.08993 * 116.76025 * 159.07550 * 15 14 13 17 17 C 1.57067 * 99.74027 * 32.83198 * 15 14 13 18 18 C 1.49791 * 111.00085 * 177.80529 * 13 12 11 19 19 H 1.09001 * 117.07881 * 74.54628 * 18 13 12 20 20 C 1.56104 * 103.75374 * 304.61666 * 18 13 12 21 21 O 1.44120 * 105.40208 * 288.51942 * 20 18 13 22 22 H 0.96996 * 120.00253 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.46675 * 59.99661 * 9 7 2 24 24 H 1.08996 * 109.47104 * 300.00384 * 9 7 2 25 25 H 1.08999 * 109.46758 * 60.00146 * 11 10 9 26 26 H 1.09003 * 109.46830 * 300.00215 * 11 10 9 27 27 H 1.08998 * 109.47370 * 305.00100 * 12 11 10 28 28 H 1.08999 * 109.47067 * 185.00097 * 12 11 10 29 29 H 1.09000 * 110.38819 * 4.04596 * 14 13 12 30 30 H 1.08994 * 110.37363 * 241.84837 * 14 13 12 31 31 H 1.08998 * 112.44834 * 191.26328 * 17 15 14 32 32 H 1.09004 * 112.45302 * 63.68320 * 17 15 14 33 33 H 1.08998 * 110.26414 * 47.50331 * 20 18 13 34 34 H 1.09008 * 110.25987 * 169.45206 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5650 -4.8755 0.0000 12 6 2.6479 -5.9562 0.0006 13 7 3.4071 -5.8879 1.2565 14 6 2.5226 -6.1162 2.4275 15 6 3.1516 -7.3308 3.1777 16 1 2.8852 -7.4506 4.2277 17 6 4.6704 -7.0769 2.8680 18 6 4.4440 -6.9673 1.3163 19 1 5.3321 -6.8370 0.6979 20 6 3.6271 -8.2792 1.0964 21 8 2.8726 -8.4682 2.3096 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6240 -2.5567 0.8902 25 1 0.9452 -4.9822 -0.8903 26 1 0.9446 -4.9827 0.8897 27 1 3.3221 -5.7956 -0.8406 28 1 2.1820 -6.9375 -0.0894 29 1 1.5116 -6.3564 2.0986 30 1 2.5118 -5.2372 3.0719 31 1 5.2979 -7.9262 3.1381 32 1 5.0338 -6.1456 3.3023 33 1 2.9537 -8.1667 0.2468 34 1 4.3009 -9.1207 0.9344 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718300780.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:37 Heat of formation + Delta-G solvation = -76.900751 kcal Electronic energy + Delta-G solvation = -16112.969899 eV Core-core repulsion = 13432.232931 eV Total energy + Delta-G solvation = -2680.736968 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.14444 -38.64897 -36.13485 -34.87842 -32.64862 -31.01988 -29.72427 -28.15233 -25.89778 -24.52560 -23.50948 -22.21963 -20.32997 -18.62919 -18.10188 -17.85868 -17.41961 -16.66292 -16.35219 -16.22139 -15.43444 -14.99109 -14.34881 -14.19916 -13.69598 -13.53019 -13.43135 -13.01789 -12.90412 -12.78950 -12.65635 -12.46428 -12.22807 -12.15568 -12.13349 -11.71244 -11.26954 -10.87767 -10.52765 -10.21584 -9.19519 -8.32664 -6.45015 1.39759 1.41509 1.56557 2.34909 2.63724 2.90516 3.01025 3.16054 3.30144 3.50787 3.80275 3.91551 4.07863 4.12430 4.22102 4.39813 4.45048 4.51831 4.68783 4.77734 4.79457 4.85486 4.89446 4.91585 4.99014 5.09790 5.16449 5.54614 5.61746 5.79090 5.95320 6.00757 6.54524 6.83327 7.27315 8.80151 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.050723 B = 0.005339 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.889921 B = 5243.511816 C = 5389.235090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.985 3.015 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.209 3.791 10 O -0.394 6.394 11 C 0.057 3.943 12 C 0.052 3.948 13 N -0.525 5.525 14 C 0.006 3.994 15 C 0.055 3.945 16 H 0.162 0.838 17 C -0.145 4.145 18 C 0.027 3.973 19 H 0.148 0.852 20 C 0.004 3.996 21 O -0.400 6.400 22 H 0.271 0.729 23 H -0.016 1.016 24 H -0.019 1.019 25 H 0.047 0.953 26 H 0.034 0.966 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.198 -15.891 4.350 18.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.193 4.193 3 Si 0.808 3.192 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.583 4.583 8 H 0.079 0.921 9 C 0.134 3.866 10 O -0.313 6.313 11 C -0.021 4.021 12 C -0.076 4.076 13 N -0.249 5.249 14 C -0.122 4.122 15 C -0.003 4.003 16 H 0.180 0.820 17 C -0.182 4.182 18 C -0.081 4.081 19 H 0.165 0.835 20 C -0.074 4.074 21 O -0.320 6.320 22 H 0.080 0.920 23 H 0.001 0.999 24 H -0.002 1.002 25 H 0.065 0.935 26 H 0.052 0.948 27 H 0.104 0.896 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.125 0.875 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.322 -15.402 4.385 18.047 hybrid contribution -0.860 0.273 -0.296 0.950 sum 7.462 -15.129 4.089 17.358 Atomic orbital electron populations 1.70080 1.07816 1.28600 1.50693 1.25986 0.95968 1.03456 0.93874 0.85108 0.78635 0.77158 0.78324 1.18832 1.19539 1.19585 1.21399 0.94042 0.90802 1.52018 0.92127 1.19805 0.88693 0.85062 0.93087 1.87906 1.34642 1.13735 1.95037 1.22628 0.95460 0.84746 0.99221 1.22400 0.95766 0.95958 0.93427 1.65077 1.12795 1.45215 1.01854 1.23935 0.95955 0.98703 0.93581 1.25315 0.94940 0.84115 0.95889 0.82046 1.24275 0.96115 1.03920 0.93934 1.25289 0.95858 0.88117 0.98796 0.83456 1.24404 0.95836 0.99302 0.87818 1.89054 1.68994 1.45063 1.28880 0.92038 0.99872 1.00150 0.93450 0.94767 0.89555 0.90795 0.92706 0.90762 0.87459 0.88869 0.90630 0.88801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.16 13.29 21.45 0.28 -56.87 16 2 C 0.01 0.31 5.46 84.65 0.46 0.78 16 3 Si 0.99 45.18 29.54 68.60 2.03 47.21 16 4 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.55 -33.48 9.43 25.60 0.24 -33.24 16 8 H 0.06 3.71 7.81 -2.91 -0.02 3.69 16 9 C 0.21 12.21 5.69 71.24 0.41 12.61 16 10 O -0.39 -20.17 10.27 -148.98 -1.53 -21.70 16 11 C 0.06 2.23 5.92 71.98 0.43 2.66 16 12 C 0.05 1.60 4.78 86.30 0.41 2.01 16 13 N -0.52 -15.82 5.31 -838.45 -4.45 -20.26 16 14 C 0.01 0.18 5.47 87.03 0.48 0.66 16 15 C 0.05 1.18 5.97 33.07 0.20 1.37 16 16 H 0.16 2.64 8.14 -2.39 -0.02 2.62 16 17 C -0.14 -2.73 6.86 33.50 0.23 -2.50 16 18 C 0.03 0.58 5.34 46.90 0.25 0.83 16 19 H 0.15 2.68 8.14 -2.39 -0.02 2.66 16 20 C 0.00 0.08 6.81 73.06 0.50 0.58 16 21 O -0.40 -9.83 11.24 -148.98 -1.67 -11.50 16 22 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 23 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 24 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 25 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.03 1.35 6.42 -2.39 -0.02 1.33 16 27 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 28 H 0.07 1.92 5.44 -2.39 -0.01 1.90 16 29 H 0.05 1.66 6.50 -2.39 -0.02 1.64 16 30 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.08 1.61 5.18 -2.39 -0.01 1.59 16 34 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 Total: -1.00 -70.84 273.78 -0.67 -71.51 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: 1.08 Total: 5.88 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: 3.60 Total: -14.25 kcal Atomic # 7 Polarization: -72.97 SS G_CDS: -4.16 Total: -77.14 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -3.21 Total: -33.21 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -70.84 -0.67 -71.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718300780.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.395 kcal (2) G-P(sol) polarization free energy of solvation -70.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds