Wall clock time and date at job start Mon Mar 30 2020 02:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99494 * 2 1 4 4 H 1.48502 * 109.47206 * 269.99776 * 3 2 1 5 5 H 1.48494 * 109.47690 * 29.99892 * 3 2 1 6 6 H 1.48505 * 109.47001 * 150.00079 * 3 2 1 7 7 C 1.37873 * 120.00339 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00056 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00241 * 179.97438 * 7 2 1 10 10 N 1.46493 * 109.47194 * 180.02562 * 9 7 2 11 11 C 1.34779 * 119.99963 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99919 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.99954 * 179.97438 * 11 10 9 14 14 C 1.53009 * 109.47158 * 179.97438 * 13 11 10 15 15 O 1.42899 * 109.47113 * 180.02562 * 14 13 11 16 16 C 1.42903 * 113.99629 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.46726 * 180.02562 * 16 15 14 18 18 C 1.53003 * 117.49371 * 243.61887 * 17 16 15 19 19 C 1.53001 * 117.49608 * 174.99962 * 17 16 15 20 20 H 0.97003 * 119.99988 * 0.02562 * 1 2 3 21 21 H 1.09007 * 109.46692 * 59.99925 * 9 7 2 22 22 H 1.09004 * 109.47198 * 300.00876 * 9 7 2 23 23 H 0.96995 * 120.00307 * 359.97438 * 10 9 7 24 24 H 1.08997 * 109.47397 * 60.00544 * 13 11 10 25 25 H 1.08998 * 109.47229 * 299.99586 * 13 11 10 26 26 H 1.09007 * 109.46516 * 60.00039 * 14 13 11 27 27 H 1.09004 * 109.47113 * 300.00507 * 14 13 11 28 28 H 1.09002 * 109.47382 * 59.99956 * 16 15 14 29 29 H 1.09001 * 109.46938 * 299.99942 * 16 15 14 30 30 H 1.08995 * 115.55630 * 29.32572 * 17 16 15 31 31 H 1.08998 * 117.50656 * 0.02562 * 18 17 16 32 32 H 1.09001 * 117.49674 * 145.02590 * 18 17 16 33 33 H 1.09003 * 117.49710 * 214.97494 * 19 17 16 34 34 H 1.08998 * 117.50185 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 7 4.0000 -2.5751 0.0001 11 6 5.3251 -2.8213 0.0001 12 8 6.1132 -1.8994 0.0006 13 6 5.8274 -4.2421 0.0008 14 6 7.3575 -4.2421 0.0001 15 8 7.8339 -5.5893 0.0002 16 6 9.2585 -5.7020 0.0001 17 6 9.6530 -7.1803 -0.0004 18 6 10.4178 -7.7077 1.2152 19 6 11.1414 -7.5141 -0.1189 20 1 -0.4850 0.8401 -0.0004 21 1 3.8752 -0.6795 0.8895 22 1 3.8746 -0.6806 -0.8905 23 1 3.3697 -3.3124 0.0009 24 1 5.4642 -4.7564 -0.8889 25 1 5.4642 -4.7555 0.8911 26 1 7.7212 -3.7276 0.8897 27 1 7.7204 -3.7287 -0.8904 28 1 9.6613 -5.2184 0.8901 29 1 9.6611 -5.2185 -0.8899 30 1 8.9459 -7.8555 -0.4823 31 1 10.6396 -7.0017 2.0156 32 1 10.2139 -8.7301 1.5334 33 1 11.4135 -8.4091 -0.6784 34 1 11.8395 -6.6807 -0.1968 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787623514.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:43 Heat of formation + Delta-G solvation = -73.338873 kcal Electronic energy + Delta-G solvation = -14868.654396 eV Core-core repulsion = 12188.071883 eV Total energy + Delta-G solvation = -2680.582513 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.21079 -38.40955 -36.69264 -34.34883 -32.41751 -31.53913 -28.11912 -26.93228 -23.68550 -22.68885 -21.72134 -20.89726 -19.78646 -17.57070 -16.74845 -16.32670 -15.88798 -15.51728 -15.10206 -14.85634 -14.49125 -13.92787 -13.39791 -13.28838 -12.85169 -12.33142 -12.21609 -11.85845 -11.60397 -11.42605 -11.13420 -11.01564 -10.77758 -10.72501 -10.41156 -9.98648 -9.58436 -9.51316 -9.28653 -8.79321 -8.18619 -6.22520 -4.25008 3.17961 3.18799 3.26326 3.32848 3.40784 3.56216 4.17448 4.32482 4.54572 4.59508 4.81114 5.01367 5.05807 5.11868 5.14503 5.26595 5.31820 5.41620 5.46071 5.56966 5.70009 5.78429 5.84568 5.92650 5.95737 6.78447 7.04994 7.13026 7.19077 7.37154 8.10619 8.48928 8.73105 8.88894 9.37353 10.89414 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.084586 B = 0.003665 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 330.943148 B = 7637.006694 C = 7865.430961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.077 3.923 3 Si 0.878 3.122 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.219 3.781 10 N -0.703 5.703 11 C 0.504 3.496 12 O -0.563 6.563 13 C -0.139 4.139 14 C 0.080 3.920 15 O -0.390 6.390 16 C 0.094 3.906 17 C -0.152 4.152 18 C -0.178 4.178 19 C -0.176 4.176 20 H 0.268 0.732 21 H 0.026 0.974 22 H 0.021 0.979 23 H 0.398 0.602 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.702 -13.278 0.349 22.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.127 4.127 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.098 0.902 9 C 0.097 3.903 10 N -0.352 5.352 11 C 0.289 3.711 12 O -0.443 6.443 13 C -0.179 4.179 14 C 0.003 3.997 15 O -0.310 6.310 16 C 0.018 3.982 17 C -0.170 4.170 18 C -0.215 4.215 19 C -0.213 4.213 20 H 0.078 0.922 21 H 0.043 0.957 22 H 0.039 0.961 23 H 0.232 0.768 24 H 0.116 0.884 25 H 0.116 0.884 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.132 0.868 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 17.936 -12.628 0.353 21.938 hybrid contribution 0.090 0.740 -0.020 0.745 sum 18.026 -11.888 0.332 21.596 Atomic orbital electron populations 1.69884 1.06214 1.27446 1.49396 1.24803 0.94803 0.99198 0.93858 0.86805 0.80552 0.83205 0.79048 1.19841 1.20882 1.18523 1.21097 0.88501 0.95275 1.53351 0.90196 1.19510 0.95290 0.78655 0.96819 1.46172 1.05655 1.11174 1.72155 1.20304 0.83290 0.90359 0.77147 1.90655 1.55572 1.46592 1.51499 1.21471 0.95476 0.95639 1.05340 1.22130 0.93473 0.82411 1.01665 1.87788 1.20594 1.27014 1.95561 1.21960 0.81731 0.94285 1.00268 1.22155 0.94892 0.96675 1.03291 1.23076 1.04129 1.02615 0.91706 1.22975 0.94067 1.03439 1.00797 0.92239 0.95653 0.96116 0.76787 0.88375 0.88365 0.92467 0.92445 0.93166 0.92864 0.86802 0.88645 0.88623 0.88436 0.88667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.96 55.43 0.77 -25.76 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 7 C -0.54 -14.97 9.83 -34.44 -0.34 -15.30 16 8 H 0.08 2.28 7.84 -52.49 -0.41 1.87 16 9 C 0.22 5.41 4.50 -5.20 -0.02 5.39 16 10 N -0.70 -14.23 5.55 -61.47 -0.34 -14.57 16 11 C 0.50 9.51 7.83 -10.99 -0.09 9.43 16 12 O -0.56 -12.65 15.98 5.55 0.09 -12.56 16 13 C -0.14 -1.94 6.07 -27.88 -0.17 -2.11 16 14 C 0.08 1.10 5.23 37.16 0.19 1.29 16 15 O -0.39 -5.07 10.34 -35.23 -0.36 -5.43 16 16 C 0.09 0.98 6.22 37.16 0.23 1.22 16 17 C -0.15 -1.37 6.06 -90.62 -0.55 -1.92 16 18 C -0.18 -1.37 10.18 -26.73 -0.27 -1.64 16 19 C -0.18 -1.25 10.25 -26.73 -0.27 -1.53 16 20 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 21 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 22 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 23 H 0.40 7.05 8.32 -40.82 -0.34 6.71 16 24 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 26 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 27 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 28 H 0.05 0.49 7.88 -51.93 -0.41 0.09 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.10 0.71 8.03 -51.93 -0.42 0.29 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 294.02 15.07 4.43 4.43 Total: -1.00 -31.76 294.02 -6.78 -38.54 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.31 Total: 1.65 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -1.38 Total: -3.09 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.43 Total: -40.33 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.28 Total: -17.99 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.76 -6.78 -38.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787623514.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.802 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds