Wall clock time and date at job start Mon Mar 30 2020 03:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00072 * 2 1 4 4 H 1.48500 * 109.47061 * 269.99853 * 3 2 1 5 5 H 1.48502 * 109.47329 * 30.00007 * 3 2 1 6 6 H 1.48503 * 109.47518 * 149.99839 * 3 2 1 7 7 C 1.37874 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00222 * 359.97438 * 7 2 1 9 9 C 1.50707 * 120.00279 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.47247 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99724 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00169 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.99705 * 179.97438 * 11 10 9 14 14 H 1.09002 * 108.96294 * 300.00061 * 13 11 10 15 15 C 1.54210 * 108.90920 * 181.23579 * 13 11 10 16 16 C 1.50619 * 109.06181 * 161.86824 * 15 13 11 17 17 C 1.53828 * 112.46433 * 90.33098 * 16 15 13 18 18 O 1.43993 * 113.41039 * 317.88303 * 17 16 15 19 19 C 1.40319 * 116.58144 * 317.89445 * 18 17 16 20 20 C 1.46286 * 108.97714 * 58.80144 * 13 11 10 21 21 H 0.97002 * 120.00116 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.46898 * 59.99699 * 9 7 2 23 23 H 1.08998 * 109.46646 * 299.99975 * 9 7 2 24 24 H 0.97000 * 120.00108 * 359.97438 * 10 9 7 25 25 H 1.08996 * 109.53793 * 281.74702 * 15 13 11 26 26 H 1.09000 * 109.53674 * 41.99904 * 15 13 11 27 27 H 1.09000 * 108.88956 * 329.56572 * 16 15 13 28 28 H 1.08998 * 108.80485 * 211.04219 * 16 15 13 29 29 H 1.08997 * 108.69489 * 196.86686 * 17 16 15 30 30 H 1.09005 * 108.69488 * 78.89876 * 17 16 15 31 31 H 1.08992 * 109.60141 * 335.27154 * 19 18 17 32 32 H 1.09004 * 109.72037 * 214.87915 * 19 18 17 33 33 H 1.08995 * 108.93883 * 302.67486 * 20 13 11 34 34 H 1.09004 * 108.93400 * 61.27959 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0010 11 6 5.3249 -2.8216 0.0009 12 8 6.1130 -1.8998 0.0005 13 6 5.8272 -4.2424 0.0014 14 1 5.4594 -4.7478 0.8944 15 6 7.3689 -4.2274 0.0327 16 6 7.8650 -5.5785 0.4766 17 6 8.0981 -6.5363 -0.7044 18 8 7.0604 -6.4787 -1.7010 19 6 5.7405 -6.4092 -1.2299 20 6 5.3100 -4.9302 -1.1816 21 1 -0.4850 0.8401 -0.0004 22 1 3.8745 -0.6801 0.8911 23 1 3.8751 -0.6805 -0.8888 24 1 3.3695 -3.3126 0.0010 25 1 7.7516 -4.0079 -0.9640 26 1 7.7119 -3.4652 0.7323 27 1 7.1303 -6.0206 1.1495 28 1 8.8034 -5.4485 1.0157 29 1 8.1586 -7.5549 -0.3214 30 1 9.0488 -6.2858 -1.1750 31 1 5.6862 -6.8386 -0.2296 32 1 5.0811 -6.9602 -1.9005 33 1 4.2213 -4.8788 -1.1729 34 1 5.6792 -4.4250 -2.0741 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787630182.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:27 Heat of formation + Delta-G solvation = -100.086919 kcal Electronic energy + Delta-G solvation = -16023.438373 eV Core-core repulsion = 13341.695977 eV Total energy + Delta-G solvation = -2681.742396 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.11870 -38.37129 -34.70201 -34.30924 -32.79786 -32.15567 -28.27969 -26.99368 -25.74514 -22.49866 -21.27361 -20.57358 -19.59948 -17.67366 -16.61057 -16.48266 -15.63981 -15.30274 -15.25757 -14.54880 -14.14238 -13.67554 -13.36509 -13.09923 -12.95321 -12.38145 -12.31548 -12.00722 -11.54481 -11.32369 -11.03216 -10.78105 -10.72113 -10.61784 -10.49255 -9.97767 -9.73980 -9.49697 -8.99702 -8.78438 -8.14601 -6.22304 -4.24535 3.23026 3.27303 3.32932 3.41493 3.72555 3.95787 4.32900 4.52521 4.73823 4.89430 4.93376 5.01662 5.13183 5.15797 5.37867 5.43840 5.52094 5.57685 5.72101 5.86028 5.89013 6.03165 6.12528 6.32161 6.38069 6.81181 7.06834 7.22419 7.27436 7.39190 8.12966 8.51514 8.74301 8.93723 9.38089 10.89674 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.053380 B = 0.005717 C = 0.005343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.410522 B = 4896.833970 C = 5239.254869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.219 3.781 10 N -0.705 5.705 11 C 0.502 3.498 12 O -0.558 6.558 13 C -0.104 4.104 14 H 0.088 0.912 15 C -0.098 4.098 16 C -0.154 4.154 17 C 0.063 3.937 18 O -0.385 6.385 19 C 0.072 3.928 20 C -0.147 4.147 21 H 0.268 0.732 22 H 0.024 0.976 23 H 0.020 0.980 24 H 0.395 0.605 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.048 0.952 30 H 0.085 0.915 31 H 0.052 0.948 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.661 -13.383 0.097 18.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.097 3.903 10 N -0.354 5.354 11 C 0.287 3.713 12 O -0.437 6.437 13 C -0.125 4.125 14 H 0.107 0.893 15 C -0.136 4.136 16 C -0.192 4.192 17 C -0.013 4.013 18 O -0.303 6.303 19 C -0.006 4.006 20 C -0.185 4.185 21 H 0.077 0.923 22 H 0.042 0.958 23 H 0.038 0.962 24 H 0.229 0.771 25 H 0.091 0.909 26 H 0.097 0.903 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 13.065 -12.574 -0.081 18.133 hybrid contribution -0.198 0.609 0.358 0.734 sum 12.867 -11.965 0.277 17.572 Atomic orbital electron populations 1.69879 1.06212 1.27430 1.49467 1.24793 0.94785 0.99173 0.93848 0.86814 0.80552 0.83234 0.79070 1.19829 1.20883 1.18555 1.21094 0.88529 0.95208 1.53303 0.90283 1.19491 0.95240 0.78832 0.96724 1.46210 1.05797 1.10928 1.72440 1.20560 0.83064 0.90793 0.76869 1.90630 1.55568 1.46425 1.51091 1.20417 0.97505 0.94332 1.00286 0.89344 1.21132 0.92853 0.96194 1.03403 1.21972 1.02448 0.96471 0.98323 1.22949 0.90883 0.97719 0.89755 1.87459 1.14606 1.94445 1.33826 1.22305 0.83624 0.95029 0.99611 1.21153 1.01677 0.96918 0.98747 0.92258 0.95777 0.96205 0.77071 0.90850 0.90288 0.91711 0.90587 0.93417 0.89626 0.92923 0.89460 0.90422 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.96 55.43 0.77 -25.79 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.54 -14.98 9.83 -34.44 -0.34 -15.32 16 8 H 0.08 2.26 7.84 -52.48 -0.41 1.85 16 9 C 0.22 5.46 4.50 -5.19 -0.02 5.44 16 10 N -0.71 -14.40 5.38 -61.47 -0.33 -14.73 16 11 C 0.50 9.65 7.10 -10.99 -0.08 9.57 16 12 O -0.56 -12.84 15.61 5.56 0.09 -12.76 16 13 C -0.10 -1.44 2.10 -94.33 -0.20 -1.64 16 14 H 0.09 1.07 7.60 -51.93 -0.39 0.68 16 15 C -0.10 -1.28 4.51 -27.29 -0.12 -1.40 16 16 C -0.15 -1.49 5.32 -27.49 -0.15 -1.63 16 17 C 0.06 0.59 6.67 37.59 0.25 0.84 16 18 O -0.38 -4.54 10.17 -33.68 -0.34 -4.88 16 19 C 0.07 0.74 6.38 37.74 0.24 0.98 16 20 C -0.15 -1.83 4.61 -29.34 -0.14 -1.97 16 21 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 22 H 0.02 0.64 7.20 -51.93 -0.37 0.26 16 23 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 24 H 0.40 7.09 7.48 -40.82 -0.31 6.78 16 25 H 0.07 1.03 7.82 -51.93 -0.41 0.63 16 26 H 0.08 1.14 7.43 -51.93 -0.39 0.76 16 27 H 0.06 0.58 6.84 -51.93 -0.35 0.23 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.47 6.98 -51.93 -0.36 0.11 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.92 7.18 -51.93 -0.37 0.55 16 34 H 0.08 1.10 8.13 -51.93 -0.42 0.68 16 LS Contribution 272.77 15.07 4.11 4.11 Total: -1.00 -32.17 272.77 -6.06 -38.23 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -5.04 Total: 1.90 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -0.65 Total: -3.01 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.44 Total: -40.52 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.26 Total: -17.64 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -32.17 -6.06 -38.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787630182.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.857 kcal (2) G-P(sol) polarization free energy of solvation -32.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds