Wall clock time and date at job start Mon Mar 30 2020 03:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00072 * 2 1 4 4 H 1.48500 * 109.47061 * 269.99853 * 3 2 1 5 5 H 1.48502 * 109.47329 * 30.00007 * 3 2 1 6 6 H 1.48503 * 109.47518 * 149.99839 * 3 2 1 7 7 C 1.37874 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00222 * 359.97438 * 7 2 1 9 9 C 1.50707 * 120.00279 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.47247 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99724 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00169 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.99705 * 179.97438 * 11 10 9 14 14 H 1.09002 * 108.96294 * 300.00061 * 13 11 10 15 15 C 1.54210 * 108.90920 * 181.23579 * 13 11 10 16 16 C 1.50619 * 109.06181 * 161.86824 * 15 13 11 17 17 C 1.53828 * 112.46433 * 90.33098 * 16 15 13 18 18 O 1.43993 * 113.41039 * 317.88303 * 17 16 15 19 19 C 1.40319 * 116.58144 * 317.89445 * 18 17 16 20 20 C 1.46286 * 108.97714 * 58.80144 * 13 11 10 21 21 H 0.97002 * 120.00116 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.46898 * 59.99699 * 9 7 2 23 23 H 1.08998 * 109.46646 * 299.99975 * 9 7 2 24 24 H 0.97000 * 120.00108 * 359.97438 * 10 9 7 25 25 H 1.08996 * 109.53793 * 281.74702 * 15 13 11 26 26 H 1.09000 * 109.53674 * 41.99904 * 15 13 11 27 27 H 1.09000 * 108.88956 * 329.56572 * 16 15 13 28 28 H 1.08998 * 108.80485 * 211.04219 * 16 15 13 29 29 H 1.08997 * 108.69489 * 196.86686 * 17 16 15 30 30 H 1.09005 * 108.69488 * 78.89876 * 17 16 15 31 31 H 1.08992 * 109.60141 * 335.27154 * 19 18 17 32 32 H 1.09004 * 109.72037 * 214.87915 * 19 18 17 33 33 H 1.08995 * 108.93883 * 302.67486 * 20 13 11 34 34 H 1.09004 * 108.93400 * 61.27959 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0010 11 6 5.3249 -2.8216 0.0009 12 8 6.1130 -1.8998 0.0005 13 6 5.8272 -4.2424 0.0014 14 1 5.4594 -4.7478 0.8944 15 6 7.3689 -4.2274 0.0327 16 6 7.8650 -5.5785 0.4766 17 6 8.0981 -6.5363 -0.7044 18 8 7.0604 -6.4787 -1.7010 19 6 5.7405 -6.4092 -1.2299 20 6 5.3100 -4.9302 -1.1816 21 1 -0.4850 0.8401 -0.0004 22 1 3.8745 -0.6801 0.8911 23 1 3.8751 -0.6805 -0.8888 24 1 3.3695 -3.3126 0.0010 25 1 7.7516 -4.0079 -0.9640 26 1 7.7119 -3.4652 0.7323 27 1 7.1303 -6.0206 1.1495 28 1 8.8034 -5.4485 1.0157 29 1 8.1586 -7.5549 -0.3214 30 1 9.0488 -6.2858 -1.1750 31 1 5.6862 -6.8386 -0.2296 32 1 5.0811 -6.9602 -1.9005 33 1 4.2213 -4.8788 -1.1729 34 1 5.6792 -4.4250 -2.0741 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787630182.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:26 Heat of formation + Delta-G solvation = -123.675441 kcal Electronic energy + Delta-G solvation = -16024.461248 eV Core-core repulsion = 13341.695977 eV Total energy + Delta-G solvation = -2682.765271 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.37420 -39.57410 -36.26776 -35.71212 -34.47535 -33.43489 -30.12378 -28.05963 -26.75735 -24.27897 -22.61800 -21.52097 -21.03455 -19.29531 -18.15601 -17.54692 -16.97685 -16.82984 -16.41396 -15.89317 -15.80589 -14.98098 -14.65332 -14.57699 -14.35977 -14.02278 -13.65939 -13.23135 -13.08491 -12.73200 -12.38563 -12.27701 -11.96326 -11.77415 -11.67921 -11.56452 -11.32970 -10.94144 -10.86774 -10.26484 -9.95508 -8.42132 -6.49157 1.30496 1.32836 1.45190 1.69591 2.25911 2.42834 2.93196 2.98203 3.55493 3.72730 3.93709 4.00949 4.13927 4.34161 4.46701 4.56665 4.58400 4.65412 4.76733 4.80843 4.98304 5.01036 5.11240 5.13262 5.17057 5.23874 5.29686 5.38092 5.50363 6.06347 6.51440 6.52102 6.80929 7.13454 7.37610 8.72572 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.053380 B = 0.005717 C = 0.005343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.410522 B = 4896.833970 C = 5239.254869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.028 3.972 3 Si 0.936 3.064 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.263 1.263 7 C -0.547 4.547 8 H 0.061 0.939 9 C 0.230 3.770 10 N -0.705 5.705 11 C 0.498 3.502 12 O -0.598 6.598 13 C -0.091 4.091 14 H 0.117 0.883 15 C -0.095 4.095 16 C -0.148 4.148 17 C 0.058 3.942 18 O -0.406 6.406 19 C 0.076 3.924 20 C -0.146 4.146 21 H 0.273 0.727 22 H 0.012 0.988 23 H 0.008 0.992 24 H 0.408 0.592 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.694 -14.747 0.553 20.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.172 4.172 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.187 1.187 7 C -0.585 4.585 8 H 0.079 0.921 9 C 0.106 3.894 10 N -0.354 5.354 11 C 0.286 3.714 12 O -0.480 6.480 13 C -0.112 4.112 14 H 0.135 0.865 15 C -0.133 4.133 16 C -0.185 4.185 17 C -0.017 4.017 18 O -0.325 6.325 19 C -0.001 4.001 20 C -0.184 4.184 21 H 0.082 0.918 22 H 0.029 0.971 23 H 0.026 0.974 24 H 0.244 0.756 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.111 0.889 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.120 0.880 33 H 0.101 0.899 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.098 -13.976 0.372 19.855 hybrid contribution -0.519 0.993 0.209 1.140 sum 13.579 -12.983 0.581 18.796 Atomic orbital electron populations 1.69973 1.07620 1.28637 1.50609 1.25574 0.95528 1.02582 0.93552 0.85876 0.79206 0.79485 0.79425 1.19069 1.19598 1.18711 1.21280 0.89826 0.94649 1.52709 0.92126 1.19099 0.93502 0.81273 0.95478 1.46077 1.06880 1.09579 1.72868 1.21569 0.81956 0.92857 0.74996 1.90607 1.56374 1.48400 1.52619 1.20478 0.98051 0.90465 1.02235 0.86510 1.21099 0.92087 0.98082 1.02081 1.21921 1.03599 0.94242 0.98779 1.23113 0.90479 0.98825 0.89316 1.87443 1.15413 1.94418 1.35265 1.22347 0.83387 0.93097 1.01314 1.21171 1.01887 0.98497 0.96842 0.91793 0.97056 0.97395 0.75578 0.92575 0.92122 0.90259 0.88874 0.91110 0.89203 0.90718 0.88037 0.89916 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.61 13.96 21.45 0.30 -55.31 16 2 C 0.03 1.60 5.47 84.65 0.46 2.06 16 3 Si 0.94 44.53 27.47 68.60 1.88 46.41 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.26 -12.47 6.54 99.48 0.65 -11.82 16 7 C -0.55 -30.41 9.83 25.60 0.25 -30.16 16 8 H 0.06 3.52 7.84 -2.91 -0.02 3.49 16 9 C 0.23 11.53 4.50 85.63 0.39 11.91 16 10 N -0.70 -28.60 5.38 -466.78 -2.51 -31.11 16 11 C 0.50 18.99 7.10 87.66 0.62 19.61 16 12 O -0.60 -27.82 15.61 -3.03 -0.05 -27.87 16 13 C -0.09 -2.38 2.10 -13.20 -0.03 -2.41 16 14 H 0.12 2.44 7.60 -2.39 -0.02 2.43 16 15 C -0.10 -2.37 4.51 30.23 0.14 -2.23 16 16 C -0.15 -2.39 5.32 30.10 0.16 -2.23 16 17 C 0.06 0.92 6.67 72.26 0.48 1.40 16 18 O -0.41 -8.58 10.17 -143.43 -1.46 -10.03 16 19 C 0.08 1.35 6.38 72.36 0.46 1.81 16 20 C -0.15 -3.41 4.61 28.90 0.13 -3.27 16 21 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 22 H 0.01 0.61 7.20 -2.39 -0.02 0.59 16 23 H 0.01 0.43 7.57 -2.39 -0.02 0.41 16 24 H 0.41 14.37 7.48 -92.71 -0.69 13.68 16 25 H 0.06 1.57 7.82 -2.39 -0.02 1.55 16 26 H 0.06 1.72 7.43 -2.39 -0.02 1.70 16 27 H 0.08 1.08 6.84 -2.39 -0.02 1.06 16 28 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.07 1.02 6.98 -2.39 -0.02 1.00 16 32 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.08 1.83 7.18 -2.39 -0.02 1.81 16 34 H 0.05 1.52 8.13 -2.39 -0.02 1.50 16 Total: -1.00 -69.50 272.77 1.57 -67.93 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 0.34 Total: 13.50 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 3.07 Total: -3.51 kcal Atomic # 7 Polarization: -84.21 SS G_CDS: -2.21 Total: -86.43 kcal Atomic # 8 Polarization: -36.40 SS G_CDS: -1.51 Total: -37.91 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.41 kcal Total: -69.50 1.57 -67.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787630182.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.745 kcal (2) G-P(sol) polarization free energy of solvation -69.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds