Wall clock time and date at job start Mon Mar 30 2020 03:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47661 * 2 1 4 4 N 1.46497 * 109.47419 * 305.00152 * 3 2 1 5 5 C 1.34777 * 120.00188 * 179.97438 * 4 3 2 6 6 O 1.21691 * 119.99834 * 359.97438 * 5 4 3 7 7 C 1.46370 * 120.00306 * 179.97438 * 5 4 3 8 8 H 1.08000 * 119.99607 * 353.94155 * 7 5 4 9 9 C 1.40052 * 120.00101 * 173.93869 * 7 5 4 10 10 N 1.30666 * 119.99747 * 6.15052 * 9 7 5 11 11 Si 1.86800 * 119.99831 * 186.15224 * 9 7 5 12 12 H 1.48498 * 109.47228 * 94.98439 * 11 9 7 13 13 H 1.48499 * 109.46703 * 214.98467 * 11 9 7 14 14 H 1.48499 * 109.47238 * 334.97869 * 11 9 7 15 15 C 1.53085 * 109.47985 * 120.03519 * 2 1 3 16 16 C 1.53176 * 109.16450 * 62.37601 * 15 2 1 17 17 C 1.53178 * 109.03540 * 56.97887 * 16 15 2 18 18 C 1.53095 * 109.16249 * 303.02149 * 17 16 15 19 19 O 1.42895 * 109.41816 * 57.60937 * 18 17 16 20 20 H 1.09000 * 109.47154 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47457 * 300.01944 * 1 2 3 22 22 H 1.09005 * 109.47248 * 60.02070 * 1 2 3 23 23 H 1.09006 * 109.46819 * 65.00297 * 3 2 1 24 24 H 1.08996 * 109.47238 * 184.99484 * 3 2 1 25 25 H 0.97002 * 120.00018 * 0.02562 * 4 3 2 26 26 H 0.97000 * 119.99780 * 180.02562 * 10 9 7 27 27 H 1.08999 * 109.52097 * 182.28155 * 15 2 1 28 28 H 1.09004 * 109.52550 * 302.46964 * 15 2 1 29 29 H 1.08999 * 109.54599 * 297.11518 * 16 15 2 30 30 H 1.09000 * 109.54738 * 176.84193 * 16 15 2 31 31 H 1.09001 * 109.52750 * 183.11630 * 17 16 15 32 32 H 1.09006 * 109.52480 * 62.92077 * 17 16 15 33 33 H 1.09003 * 109.48269 * 297.62251 * 18 17 16 34 34 H 1.09006 * 109.48803 * 177.59827 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4425 0.0000 4 7 1.4561 2.1671 -1.1314 5 6 1.7643 3.4636 -1.3328 6 8 2.5275 4.0324 -0.5745 7 6 1.1812 4.1874 -2.4635 8 1 0.5828 3.6599 -3.1915 9 6 1.3993 5.5640 -2.6012 10 7 2.2191 6.1798 -1.7913 11 14 0.5179 6.5196 -3.9426 12 1 -0.7164 7.1297 -3.3864 13 1 1.4107 7.5892 -4.4564 14 1 0.1590 5.5995 -5.0516 15 6 2.0405 -0.7224 1.2494 16 6 1.5757 -2.1814 1.2119 17 6 2.0765 -2.8321 -0.0813 18 6 1.5646 -2.0282 -1.2793 19 8 2.0065 -0.6740 -1.1666 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5141 0.8898 22 1 -0.3634 0.5135 -0.8902 23 1 1.7518 1.9298 0.9315 24 1 3.1264 1.4437 -0.0895 25 1 0.8469 1.7140 -1.7351 26 1 2.3699 7.1333 -1.8864 27 1 3.1297 -0.6875 1.2708 28 1 1.6420 -0.2360 2.1398 29 1 0.4867 -2.2181 1.2404 30 1 1.9826 -2.7160 2.0702 31 1 1.7038 -3.8546 -0.1427 32 1 3.1665 -2.8398 -0.0869 33 1 0.4750 -2.0548 -1.2962 34 1 1.9530 -2.4618 -2.2010 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832478546.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:41 Heat of formation + Delta-G solvation = -126.435861 kcal Electronic energy + Delta-G solvation = -16269.803273 eV Core-core repulsion = 13586.918302 eV Total energy + Delta-G solvation = -2682.884972 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.06792 -39.15820 -35.66862 -34.62405 -34.53582 -32.65521 -29.09750 -28.88801 -26.84646 -24.92828 -22.87845 -21.53309 -20.13208 -19.34080 -17.55125 -17.22065 -16.85706 -16.25737 -15.93172 -15.57291 -15.37640 -15.05378 -14.51911 -13.95413 -13.84697 -13.53586 -13.25486 -13.14503 -13.02303 -12.72733 -12.59687 -12.52826 -12.10941 -11.99975 -11.89535 -11.57731 -10.97896 -10.92835 -10.30573 -9.86393 -9.46337 -8.29728 -6.85050 1.40280 1.41989 1.58129 2.25703 2.46886 2.80012 3.12073 3.61442 3.71813 3.88703 3.93403 3.99065 4.13083 4.29429 4.51206 4.55339 4.66396 4.69629 4.80077 4.89020 4.93983 5.00078 5.06112 5.11854 5.21743 5.27862 5.32273 5.48960 5.88120 6.22523 6.26786 6.41608 6.86740 7.55167 8.49091 8.67582 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.054526 B = 0.005964 C = 0.005685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.394114 B = 4693.910508 C = 4923.731292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.114 3.886 3 C 0.147 3.853 4 N -0.746 5.746 5 C 0.536 3.464 6 O -0.636 6.636 7 C -0.575 4.575 8 H 0.086 0.914 9 C 0.028 3.972 10 N -0.823 5.823 11 Si 1.001 2.999 12 H -0.261 1.261 13 H -0.272 1.272 14 H -0.249 1.249 15 C -0.141 4.141 16 C -0.116 4.116 17 C -0.152 4.152 18 C 0.047 3.953 19 O -0.397 6.397 20 H 0.088 0.912 21 H 0.070 0.930 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.026 0.974 25 H 0.394 0.606 26 H 0.275 0.725 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.871 -17.244 2.215 18.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.075 3.925 3 C 0.022 3.978 4 N -0.401 5.401 5 C 0.340 3.660 6 O -0.524 6.524 7 C -0.611 4.611 8 H 0.104 0.896 9 C -0.187 4.187 10 N -0.452 5.452 11 Si 0.820 3.180 12 H -0.185 1.185 13 H -0.197 1.197 14 H -0.172 1.172 15 C -0.179 4.179 16 C -0.154 4.154 17 C -0.190 4.190 18 C -0.029 4.029 19 O -0.317 6.317 20 H 0.106 0.894 21 H 0.089 0.911 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.044 0.956 25 H 0.228 0.772 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.104 -16.625 2.704 17.600 hybrid contribution -0.239 0.426 -0.425 0.647 sum -5.343 -16.199 2.280 17.209 Atomic orbital electron populations 1.22369 0.94022 1.03499 1.02982 1.21603 0.94380 0.89827 0.86723 1.20947 0.96446 0.90170 0.90190 1.45746 1.51791 1.11420 1.31159 1.18660 0.80840 0.80453 0.86055 1.90538 1.41314 1.69014 1.51509 1.21417 1.34858 0.94584 1.10278 0.89637 1.27011 0.94019 0.98843 0.98793 1.70200 1.28976 1.10499 1.35562 0.84969 0.78108 0.77562 0.77376 1.18545 1.19653 1.17225 1.22109 1.01348 0.97484 0.96953 1.21619 1.01799 0.93567 0.98374 1.22177 1.01470 1.00412 0.94897 1.22839 0.99611 0.81129 0.99356 1.88034 1.74138 1.26141 1.43360 0.89362 0.91122 0.92658 0.92941 0.95599 0.77152 0.91523 0.92118 0.90001 0.90308 0.89940 0.88537 0.92095 0.91725 0.88337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.41 7.70 71.98 0.55 -3.86 16 2 C 0.11 3.47 0.78 -10.76 -0.01 3.47 16 3 C 0.15 6.24 4.85 86.38 0.42 6.66 16 4 N -0.75 -36.32 5.19 -467.41 -2.42 -38.74 16 5 C 0.54 32.86 7.74 86.36 0.67 33.53 16 6 O -0.64 -44.68 15.05 -4.32 -0.06 -44.75 16 7 C -0.57 -34.02 9.53 24.83 0.24 -33.79 16 8 H 0.09 4.57 7.85 -2.91 -0.02 4.55 16 9 C 0.03 1.62 5.49 85.31 0.47 2.09 16 10 N -0.82 -51.88 11.85 21.84 0.26 -51.62 16 11 Si 1.00 42.01 29.56 68.60 2.03 44.04 16 12 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 13 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 14 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 15 C -0.14 -3.41 4.92 30.68 0.15 -3.26 16 16 C -0.12 -2.01 5.72 30.71 0.18 -1.84 16 17 C -0.15 -2.62 6.14 30.69 0.19 -2.43 16 18 C 0.05 1.00 6.51 72.01 0.47 1.47 16 19 O -0.40 -12.59 10.18 -148.98 -1.52 -14.11 16 20 H 0.09 1.73 4.97 -2.39 -0.01 1.71 16 21 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 22 H 0.05 1.57 6.58 -2.38 -0.02 1.56 16 23 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 24 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.39 17.11 6.97 -92.71 -0.65 16.46 16 26 H 0.27 15.60 8.29 -92.71 -0.77 14.83 16 27 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.08 1.18 6.62 -2.39 -0.02 1.16 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.06 1.20 6.34 -2.39 -0.02 1.19 16 34 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 Total: -1.00 -78.72 273.44 2.05 -76.66 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 0.45 Total: 26.48 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: 3.32 Total: 2.05 kcal Atomic # 7 Polarization: -88.20 SS G_CDS: -2.17 Total: -90.37 kcal Atomic # 8 Polarization: -57.27 SS G_CDS: -1.58 Total: -58.85 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -78.72 2.05 -76.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832478546.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.774 kcal (2) G-P(sol) polarization free energy of solvation -78.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds