Wall clock time and date at job start Mon Mar 30 2020 03:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 120.00107 * 2 1 4 4 H 1.48491 * 109.47083 * 89.99918 * 3 2 1 5 5 H 1.48502 * 109.47080 * 210.00071 * 3 2 1 6 6 H 1.48498 * 109.46751 * 329.99670 * 3 2 1 7 7 C 1.37882 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99843 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00093 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47375 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00022 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.49505 * 328.73678 * 11 10 9 13 13 C 1.55021 * 110.55641 * 206.01871 * 11 10 9 14 14 C 1.55056 * 102.11937 * 220.57554 * 13 11 10 15 15 O 1.44596 * 103.64496 * 36.51155 * 14 13 11 16 16 C 1.42827 * 106.77181 * 320.87252 * 15 14 13 17 17 C 1.54017 * 110.87399 * 147.15982 * 16 15 14 18 18 C 1.55173 * 101.90073 * 99.80270 * 17 16 15 19 19 O 1.44461 * 103.59009 * 36.38275 * 18 17 16 20 20 C 1.43972 * 107.00775 * 320.43557 * 19 18 17 21 21 H 0.97004 * 119.99623 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47380 * 300.00410 * 9 7 2 23 23 H 1.09001 * 109.46824 * 59.99923 * 9 7 2 24 24 H 1.00907 * 111.00002 * 303.95179 * 10 9 7 25 25 H 1.09006 * 110.87076 * 338.73776 * 13 11 10 26 26 H 1.08999 * 110.87150 * 102.20643 * 13 11 10 27 27 H 1.09002 * 110.58992 * 155.04889 * 14 13 11 28 28 H 1.08997 * 110.59119 * 277.96851 * 14 13 11 29 29 H 1.08996 * 110.94294 * 217.95556 * 17 16 15 30 30 H 1.09005 * 110.94345 * 341.65019 * 17 16 15 31 31 H 1.09004 * 110.59869 * 277.85751 * 18 17 16 32 32 H 1.09000 * 110.72798 * 154.96899 * 18 17 16 33 33 H 1.08997 * 109.92775 * 266.96401 * 20 19 18 34 34 H 1.09003 * 110.09456 * 145.73824 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 1.4000 5 1 3.5467 1.4402 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0017 10 7 2.2057 -3.6157 0.0027 11 6 1.5054 -4.9070 0.0032 12 1 0.5560 -4.8261 0.5328 13 6 2.3923 -6.0070 0.6409 14 6 2.1257 -7.2194 -0.2882 15 8 2.0032 -6.6234 -1.5999 16 6 1.2848 -5.4005 -1.4315 17 6 1.7578 -4.3421 -2.4455 18 6 0.6541 -4.4253 -3.5331 19 8 -0.5516 -4.6684 -2.7754 20 6 -0.2088 -5.5882 -1.7222 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6247 -2.5564 0.8919 23 1 0.6241 -2.5575 -0.8880 24 1 2.8405 -3.5494 -0.7788 25 1 3.4439 -5.7214 0.6149 26 1 2.0745 -6.2187 1.6618 27 1 2.9642 -7.9154 -0.2603 28 1 1.2000 -7.7215 -0.0073 29 1 1.7834 -3.3515 -1.9914 30 1 2.7318 -4.6054 -2.8579 31 1 0.8507 -5.2514 -4.2165 32 1 0.5802 -3.4855 -4.0804 33 1 -0.3985 -6.6114 -2.0462 34 1 -0.7918 -5.3678 -0.8280 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885808420.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:50 Heat of formation + Delta-G solvation = -76.763759 kcal Electronic energy + Delta-G solvation = -16855.758840 eV Core-core repulsion = 14175.027812 eV Total energy + Delta-G solvation = -2680.731028 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.71252 -37.50130 -35.49520 -32.81488 -31.34454 -29.93668 -29.00288 -26.17172 -24.17072 -22.71406 -21.88238 -21.44908 -19.71775 -17.18253 -16.48177 -16.37999 -15.92556 -15.03727 -14.85987 -14.15614 -14.06357 -13.69963 -13.34842 -12.90946 -12.63923 -12.28290 -11.89994 -11.42800 -11.34481 -11.07264 -11.05601 -10.71913 -10.70909 -10.59336 -10.46979 -10.10822 -9.62829 -9.51564 -8.66688 -8.44249 -7.51712 -6.40340 -4.10744 3.43094 3.46171 3.62211 3.83011 4.09636 4.47974 4.58582 4.76530 4.79905 5.03032 5.14066 5.24958 5.35879 5.36528 5.48483 5.52497 5.65580 5.66402 5.78557 5.88910 5.91806 6.00614 6.14262 6.24646 6.27859 6.87057 6.91408 7.05915 7.11371 7.67209 8.05045 8.33397 8.51977 8.82808 9.61320 10.99433 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.033301 B = 0.008232 C = 0.007321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.606617 B = 3400.408211 C = 3823.720060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.017 3.983 3 Si 1.075 2.925 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.285 1.285 7 C -0.600 4.600 8 H 0.056 0.944 9 C 0.178 3.822 10 N -0.672 5.672 11 C 0.070 3.930 12 H 0.086 0.914 13 C -0.145 4.145 14 C 0.042 3.958 15 O -0.361 6.361 16 C 0.044 3.956 17 C -0.173 4.173 18 C 0.052 3.948 19 O -0.372 6.372 20 C 0.040 3.960 21 H 0.269 0.731 22 H 0.018 0.982 23 H -0.011 1.011 24 H 0.339 0.661 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.058 0.942 29 H 0.120 0.880 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.049 -12.416 -2.753 13.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.188 4.188 3 Si 0.903 3.097 4 H -0.214 1.214 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.639 4.639 8 H 0.074 0.926 9 C 0.051 3.949 10 N -0.305 5.305 11 C -0.043 4.043 12 H 0.104 0.896 13 C -0.183 4.183 14 C -0.035 4.035 15 O -0.280 6.280 16 C 0.002 3.998 17 C -0.211 4.211 18 C -0.024 4.024 19 O -0.291 6.291 20 C -0.038 4.038 21 H 0.079 0.921 22 H 0.036 0.964 23 H 0.007 0.993 24 H 0.161 0.839 25 H 0.103 0.897 26 H 0.098 0.902 27 H 0.109 0.891 28 H 0.076 0.924 29 H 0.138 0.862 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.821 -10.724 -2.310 11.326 hybrid contribution -0.050 -1.890 -0.590 1.980 sum 2.770 -12.613 -2.900 13.236 Atomic orbital electron populations 1.70755 1.06873 1.30626 1.46314 1.25846 0.96472 1.02715 0.93731 0.83454 0.74560 0.74862 0.76794 1.21426 1.21447 1.21028 1.21987 0.94770 0.91169 1.55958 0.92582 1.19796 0.91351 0.88673 0.95050 1.60710 1.20096 1.00139 1.49558 1.22873 0.97768 0.91956 0.91664 0.89573 1.23223 1.01973 0.93941 0.99188 1.23639 1.00970 0.95984 0.82927 1.88786 1.75849 1.35039 1.28303 1.23592 0.91737 0.85888 0.98572 1.23653 1.00011 1.00957 0.96457 1.23533 0.83829 1.01127 0.93949 1.88932 1.31696 1.64875 1.43599 1.23590 0.94551 0.93862 0.91798 0.92101 0.96386 0.99316 0.83858 0.89747 0.90235 0.89078 0.92417 0.86183 0.89358 0.92472 0.88756 0.91974 0.89512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.70 13.65 55.43 0.76 -26.94 16 2 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 3 Si 1.08 25.25 29.90 -169.99 -5.08 20.16 16 4 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.60 -16.87 9.32 -34.44 -0.32 -17.19 16 8 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 9 C 0.18 4.51 3.73 -4.98 -0.02 4.49 16 10 N -0.67 -14.09 6.08 -106.69 -0.65 -14.74 16 11 C 0.07 1.21 3.04 -66.48 -0.20 1.01 16 12 H 0.09 1.54 6.82 -51.93 -0.35 1.19 16 13 C -0.14 -2.04 6.89 -24.58 -0.17 -2.21 16 14 C 0.04 0.52 7.73 38.24 0.30 0.81 16 15 O -0.36 -5.60 10.82 -35.23 -0.38 -5.98 16 16 C 0.04 0.73 1.09 -89.76 -0.10 0.63 16 17 C -0.17 -2.96 5.12 -25.05 -0.13 -3.09 16 18 C 0.05 0.85 7.73 38.31 0.30 1.15 16 19 O -0.37 -6.93 11.54 -35.23 -0.41 -7.34 16 20 C 0.04 0.65 7.22 37.32 0.27 0.92 16 21 H 0.27 8.20 7.22 -40.82 -0.29 7.90 16 22 H 0.02 0.50 7.94 -51.93 -0.41 0.08 16 23 H -0.01 -0.28 6.66 -51.93 -0.35 -0.63 16 24 H 0.34 6.93 6.12 -39.29 -0.24 6.69 16 25 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 26 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.12 2.41 3.73 -51.93 -0.19 2.22 16 30 H 0.09 1.37 8.07 -51.93 -0.42 0.96 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.06 0.92 7.99 -51.93 -0.41 0.51 16 34 H 0.09 1.38 7.13 -51.93 -0.37 1.01 16 LS Contribution 268.92 15.07 4.05 4.05 Total: -1.00 -30.97 268.92 -6.67 -37.64 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -4.78 Total: 6.24 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -0.17 Total: -13.10 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.11 Total: -41.68 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.79 Total: -13.32 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.08 Total: 20.16 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.97 -6.67 -37.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885808420.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.127 kcal (2) G-P(sol) polarization free energy of solvation -30.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds