Wall clock time and date at job start Mon Mar 30 2020 03:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 120.00107 * 2 1 4 4 H 1.48491 * 109.47083 * 89.99918 * 3 2 1 5 5 H 1.48502 * 109.47080 * 210.00071 * 3 2 1 6 6 H 1.48498 * 109.46751 * 329.99670 * 3 2 1 7 7 C 1.37882 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99843 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00093 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47375 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00022 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.49505 * 328.73678 * 11 10 9 13 13 C 1.55021 * 110.55641 * 206.01871 * 11 10 9 14 14 C 1.55056 * 102.11937 * 220.57554 * 13 11 10 15 15 O 1.44596 * 103.64496 * 36.51155 * 14 13 11 16 16 C 1.42827 * 106.77181 * 320.87252 * 15 14 13 17 17 C 1.54017 * 110.87399 * 147.15982 * 16 15 14 18 18 C 1.55173 * 101.90073 * 99.80270 * 17 16 15 19 19 O 1.44461 * 103.59009 * 36.38275 * 18 17 16 20 20 C 1.43972 * 107.00775 * 320.43557 * 19 18 17 21 21 H 0.97004 * 119.99623 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47380 * 300.00410 * 9 7 2 23 23 H 1.09001 * 109.46824 * 59.99923 * 9 7 2 24 24 H 1.00907 * 111.00002 * 303.95179 * 10 9 7 25 25 H 1.09006 * 110.87076 * 338.73776 * 13 11 10 26 26 H 1.08999 * 110.87150 * 102.20643 * 13 11 10 27 27 H 1.09002 * 110.58992 * 155.04889 * 14 13 11 28 28 H 1.08997 * 110.59119 * 277.96851 * 14 13 11 29 29 H 1.08996 * 110.94294 * 217.95556 * 17 16 15 30 30 H 1.09005 * 110.94345 * 341.65019 * 17 16 15 31 31 H 1.09004 * 110.59869 * 277.85751 * 18 17 16 32 32 H 1.09000 * 110.72798 * 154.96899 * 18 17 16 33 33 H 1.08997 * 109.92775 * 266.96401 * 20 19 18 34 34 H 1.09003 * 110.09456 * 145.73824 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 1.4000 5 1 3.5467 1.4402 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0017 10 7 2.2057 -3.6157 0.0027 11 6 1.5054 -4.9070 0.0032 12 1 0.5560 -4.8261 0.5328 13 6 2.3923 -6.0070 0.6409 14 6 2.1257 -7.2194 -0.2882 15 8 2.0032 -6.6234 -1.5999 16 6 1.2848 -5.4005 -1.4315 17 6 1.7578 -4.3421 -2.4455 18 6 0.6541 -4.4253 -3.5331 19 8 -0.5516 -4.6684 -2.7754 20 6 -0.2088 -5.5882 -1.7222 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6247 -2.5564 0.8919 23 1 0.6241 -2.5575 -0.8880 24 1 2.8405 -3.5494 -0.7788 25 1 3.4439 -5.7214 0.6149 26 1 2.0745 -6.2187 1.6618 27 1 2.9642 -7.9154 -0.2603 28 1 1.2000 -7.7215 -0.0073 29 1 1.7834 -3.3515 -1.9914 30 1 2.7318 -4.6054 -2.8579 31 1 0.8507 -5.2514 -4.2165 32 1 0.5802 -3.4855 -4.0804 33 1 -0.3985 -6.6114 -2.0462 34 1 -0.7918 -5.3678 -0.8280 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885808420.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:50 Heat of formation + Delta-G solvation = -100.288126 kcal Electronic energy + Delta-G solvation = -16856.778933 eV Core-core repulsion = 14175.027812 eV Total energy + Delta-G solvation = -2681.751121 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.02849 -38.79596 -37.19655 -34.82112 -32.60690 -31.51233 -30.27695 -27.99042 -25.72940 -24.18549 -23.72377 -22.65958 -21.08651 -19.12627 -17.97347 -17.73888 -17.19085 -16.36244 -16.23237 -15.78011 -15.59542 -15.53394 -14.66503 -14.56567 -14.24251 -13.61334 -13.52037 -13.08960 -12.83955 -12.57140 -12.49832 -12.36010 -12.29695 -12.01875 -11.91659 -11.76633 -10.91129 -10.80961 -10.73457 -10.60830 -9.25672 -8.70721 -6.42276 1.53278 1.62179 1.80179 2.54760 2.63214 2.78850 3.13475 3.18723 3.39790 3.53561 3.72169 3.88676 4.06291 4.14395 4.22285 4.29004 4.39636 4.43683 4.57048 4.64073 4.66122 4.74122 4.78900 4.96298 4.98024 5.00393 5.10649 5.60943 5.70810 5.85831 5.99308 6.35706 6.48514 6.59723 7.39733 8.68833 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.033301 B = 0.008232 C = 0.007321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.606617 B = 3400.408211 C = 3823.720060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.035 4.035 3 Si 1.123 2.877 4 H -0.274 1.274 5 H -0.267 1.267 6 H -0.283 1.283 7 C -0.612 4.612 8 H 0.055 0.945 9 C 0.196 3.804 10 N -0.671 5.671 11 C 0.060 3.940 12 H 0.075 0.925 13 C -0.138 4.138 14 C 0.043 3.957 15 O -0.368 6.368 16 C 0.054 3.946 17 C -0.174 4.174 18 C 0.051 3.949 19 O -0.400 6.400 20 C 0.037 3.963 21 H 0.254 0.746 22 H -0.009 1.009 23 H -0.030 1.030 24 H 0.343 0.657 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.120 0.880 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.397 -13.589 -2.890 14.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.233 4.233 3 Si 0.944 3.056 4 H -0.200 1.200 5 H -0.192 1.192 6 H -0.209 1.209 7 C -0.650 4.650 8 H 0.074 0.926 9 C 0.069 3.931 10 N -0.304 5.304 11 C -0.052 4.052 12 H 0.093 0.907 13 C -0.176 4.176 14 C -0.033 4.033 15 O -0.287 6.287 16 C 0.012 3.988 17 C -0.212 4.212 18 C -0.025 4.025 19 O -0.320 6.320 20 C -0.040 4.040 21 H 0.063 0.937 22 H 0.009 0.991 23 H -0.012 1.012 24 H 0.165 0.835 25 H 0.099 0.901 26 H 0.114 0.886 27 H 0.138 0.862 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.122 0.878 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.101 0.899 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.181 -11.943 -2.441 12.888 hybrid contribution -0.464 -1.620 -0.533 1.768 sum 3.718 -13.564 -2.975 14.375 Atomic orbital electron populations 1.70893 1.07960 1.29746 1.48539 1.27414 0.96485 1.06743 0.92643 0.82853 0.74153 0.70812 0.77742 1.19951 1.19203 1.20892 1.22352 0.94943 0.92499 1.55162 0.92630 1.19394 0.91254 0.89750 0.92748 1.60625 1.19418 1.00522 1.49844 1.23006 0.97981 0.91176 0.93050 0.90712 1.23200 1.00853 0.93175 1.00344 1.23883 1.03201 0.95375 0.80841 1.88774 1.75568 1.34295 1.30015 1.23339 0.91876 0.86325 0.97303 1.23548 1.01255 0.99436 0.96962 1.23664 0.82733 1.02253 0.93842 1.88894 1.33021 1.65650 1.44433 1.23693 0.94469 0.94476 0.91411 0.93699 0.99106 1.01231 0.83484 0.90129 0.88591 0.86188 0.90519 0.89594 0.87802 0.89968 0.88696 0.89935 0.89853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.22 13.65 21.45 0.29 -57.93 16 2 C -0.03 -2.02 5.46 84.66 0.46 -1.56 16 3 Si 1.12 50.41 29.90 68.60 2.05 52.47 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.61 -34.90 9.32 25.60 0.24 -34.66 16 8 H 0.06 3.12 7.81 -2.91 -0.02 3.09 16 9 C 0.20 10.30 3.73 85.56 0.32 10.62 16 10 N -0.67 -28.39 6.08 -491.47 -2.99 -31.38 16 11 C 0.06 2.04 3.04 45.71 0.14 2.18 16 12 H 0.07 2.72 6.82 -2.39 -0.02 2.70 16 13 C -0.14 -3.55 6.89 31.99 0.22 -3.33 16 14 C 0.04 0.91 7.73 72.69 0.56 1.48 16 15 O -0.37 -10.36 10.82 -148.98 -1.61 -11.97 16 16 C 0.05 1.71 1.09 -10.24 -0.01 1.70 16 17 C -0.17 -5.89 5.12 31.68 0.16 -5.73 16 18 C 0.05 1.63 7.73 72.73 0.56 2.19 16 19 O -0.40 -14.90 11.54 -148.98 -1.72 -16.61 16 20 C 0.04 1.17 7.22 72.09 0.52 1.69 16 21 H 0.25 16.15 7.22 -92.71 -0.67 15.48 16 22 H -0.01 -0.52 7.94 -2.39 -0.02 -0.54 16 23 H -0.03 -1.66 6.66 -2.39 -0.02 -1.68 16 24 H 0.34 14.07 6.12 -89.69 -0.55 13.52 16 25 H 0.08 2.17 8.07 -2.38 -0.02 2.15 16 26 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.09 3.54 3.73 -2.39 -0.01 3.53 16 30 H 0.10 3.11 8.07 -2.38 -0.02 3.09 16 31 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 32 H 0.09 2.94 8.14 -2.39 -0.02 2.93 16 33 H 0.08 2.28 7.99 -2.39 -0.02 2.26 16 34 H 0.08 2.67 7.13 -2.39 -0.02 2.65 16 Total: -1.00 -67.02 268.92 -0.15 -67.17 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: 0.65 Total: 23.68 kcal Atomic # 6 Polarization: -28.59 SS G_CDS: 3.18 Total: -25.41 kcal Atomic # 7 Polarization: -86.62 SS G_CDS: -2.69 Total: -89.31 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -3.33 Total: -28.59 kcal Atomic # 14 Polarization: 50.41 SS G_CDS: 2.05 Total: 52.47 kcal Total: -67.02 -0.15 -67.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885808420.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.123 kcal (2) G-P(sol) polarization free energy of solvation -67.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds