Wall clock time and date at job start Mon Mar 30 2020 03:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 110.27236 * 2 1 4 4 C 1.55035 * 110.29774 * 237.85463 * 2 1 3 5 5 C 1.54937 * 102.71769 * 219.14325 * 4 2 1 6 6 N 1.48531 * 103.37331 * 37.39814 * 5 4 2 7 7 C 1.46900 * 110.99995 * 200.19451 * 6 5 4 8 8 C 1.50699 * 109.46839 * 69.87635 * 7 6 5 9 9 H 1.07994 * 120.00331 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99760 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99920 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99899 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47159 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46865 * 119.99582 * 12 10 8 15 15 H 1.48497 * 109.47087 * 239.99632 * 12 10 8 16 16 C 1.47900 * 105.82345 * 320.71279 * 6 5 4 17 17 H 1.08997 * 109.91192 * 265.97584 * 16 6 5 18 18 C 1.50694 * 109.91642 * 144.68274 * 16 6 5 19 19 O 1.20825 * 120.00407 * 341.45418 * 18 16 6 20 20 O 1.34233 * 119.99868 * 161.45273 * 18 16 6 21 21 H 1.08995 * 109.47301 * 297.90830 * 1 2 3 22 22 H 1.09005 * 109.47002 * 57.90942 * 1 2 3 23 23 H 1.09000 * 109.46957 * 177.90578 * 1 2 3 24 24 H 1.09002 * 109.47268 * 182.08672 * 3 2 1 25 25 H 1.08993 * 109.47616 * 302.09299 * 3 2 1 26 26 H 1.09002 * 109.46831 * 62.09328 * 3 2 1 27 27 H 1.09004 * 110.90974 * 100.81172 * 4 2 1 28 28 H 1.09005 * 110.74113 * 337.39476 * 4 2 1 29 29 H 1.09002 * 110.66811 * 278.88221 * 5 4 2 30 30 H 1.09001 * 110.66542 * 155.91860 * 5 4 2 31 31 H 1.08997 * 109.47107 * 189.87797 * 7 6 5 32 32 H 1.09003 * 109.47145 * 309.87496 * 7 6 5 33 33 H 0.97007 * 119.99423 * 180.02562 * 11 10 8 34 34 H 0.96698 * 117.00181 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0602 1.4352 0.0000 4 6 2.0679 -0.7737 -1.2312 5 6 3.2856 -1.5353 -0.6501 6 7 2.8313 -1.9229 0.7099 7 6 3.9751 -2.2248 1.5808 8 6 4.7203 -0.9521 1.8906 9 1 4.3782 -0.0129 1.4817 10 6 5.8388 -0.9867 2.6960 11 7 6.2552 -2.1304 3.1942 12 14 6.7630 0.5908 3.0793 13 1 6.0958 1.7321 2.4030 14 1 6.7657 0.8187 4.5468 15 1 8.1615 0.4757 2.5936 16 6 2.0645 -0.7672 1.2235 17 1 2.7162 -0.1210 1.8115 18 6 0.9145 -1.2494 2.0696 19 8 0.5315 -2.3914 1.9745 20 8 0.3155 -0.4101 2.9291 21 1 -0.3634 0.4810 0.9081 22 1 -0.3633 0.5460 -0.8707 23 1 -0.3633 -1.0270 -0.0376 24 1 3.1494 1.4202 -0.0374 25 1 1.6739 1.9653 -0.8705 26 1 1.7348 1.9427 0.9082 27 1 2.3820 -0.0857 -2.0162 28 1 1.3191 -1.4718 -1.6057 29 1 4.1564 -0.8823 -0.5933 30 1 3.5075 -2.4192 -1.2481 31 1 3.6174 -2.6714 2.5085 32 1 4.6425 -2.9228 1.0753 33 1 7.0419 -2.1547 3.7612 34 1 -0.4179 -0.7649 3.4500 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885812357.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:56 Heat of formation + Delta-G solvation = -91.904237 kcal Electronic energy + Delta-G solvation = -17026.973366 eV Core-core repulsion = 14345.585798 eV Total energy + Delta-G solvation = -2681.387568 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.27755 -38.13621 -35.43046 -34.19579 -32.23086 -29.64547 -27.54184 -27.00901 -25.20549 -22.48413 -22.14417 -19.78646 -18.69963 -17.49316 -16.81816 -15.55795 -15.28335 -14.88008 -14.41262 -14.09589 -13.37118 -13.16605 -12.75818 -12.65399 -12.46684 -12.01542 -11.73166 -11.44516 -11.27555 -11.02558 -10.95195 -10.80794 -10.49518 -10.41506 -10.15955 -10.05298 -10.01241 -9.67198 -9.58394 -8.50312 -7.35531 -6.10593 -4.20725 2.91533 3.22263 3.30776 3.32685 3.57141 4.33804 4.85025 4.92662 5.12487 5.20942 5.33643 5.60892 5.74306 5.82147 5.87208 5.97444 6.05527 6.08923 6.20603 6.34435 6.40652 6.42586 6.53094 6.64365 6.76292 7.02977 7.07223 7.45299 7.82236 7.85104 8.03934 8.17634 8.60429 8.89062 9.46216 10.95086 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.027023 B = 0.010134 C = 0.009639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.910898 B = 2762.272176 C = 2904.263456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.060 4.060 3 C -0.138 4.138 4 C -0.115 4.115 5 C 0.044 3.956 6 N -0.503 5.503 7 C 0.176 3.824 8 C -0.559 4.559 9 H 0.064 0.936 10 C 0.068 3.932 11 N -0.885 5.885 12 Si 0.889 3.111 13 H -0.271 1.271 14 H -0.282 1.282 15 H -0.283 1.283 16 C 0.076 3.924 17 H 0.116 0.884 18 C 0.494 3.506 19 O -0.505 6.505 20 O -0.526 6.526 21 H 0.063 0.937 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.032 0.968 32 H 0.037 0.963 33 H 0.263 0.737 34 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.085 6.317 -5.540 12.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.061 4.061 3 C -0.195 4.195 4 C -0.153 4.153 5 C -0.084 4.084 6 N -0.227 5.227 7 C 0.050 3.950 8 C -0.597 4.597 9 H 0.082 0.918 10 C -0.136 4.136 11 N -0.523 5.523 12 Si 0.716 3.284 13 H -0.196 1.196 14 H -0.208 1.208 15 H -0.209 1.209 16 C -0.034 4.034 17 H 0.133 0.867 18 C 0.335 3.665 19 O -0.391 6.391 20 O -0.337 6.337 21 H 0.082 0.918 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -9.031 5.566 -5.694 12.040 hybrid contribution 0.718 1.165 0.861 1.617 sum -8.313 6.731 -4.832 11.738 Atomic orbital electron populations 1.22104 0.94568 1.02109 1.02119 1.21346 0.95383 0.95328 0.94069 1.21888 1.01693 0.94338 1.01600 1.22732 0.98249 0.98358 0.96007 1.23065 0.96176 0.98790 0.90359 1.64659 1.23307 1.32031 1.02703 1.19930 0.86482 0.96281 0.92260 1.21759 1.11925 0.94564 1.31467 0.91796 1.24976 0.97043 0.96114 0.95446 1.69968 1.24593 1.24811 1.32895 0.86587 0.79872 0.83622 0.78292 1.19591 1.20843 1.20855 1.22208 0.92287 0.94346 0.94577 0.86663 1.23567 0.82531 0.83279 0.77100 1.90627 1.62927 1.20009 1.65577 1.84604 1.49311 1.47186 1.52576 0.91835 0.92339 0.92253 0.91829 0.92628 0.92254 0.91328 0.91207 0.92270 0.90936 0.95003 0.94506 0.92703 0.74583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 7.26 37.16 0.27 -1.88 16 2 C -0.06 -0.97 0.97 -152.92 -0.15 -1.12 16 3 C -0.14 -1.98 8.22 37.16 0.31 -1.67 16 4 C -0.12 -1.79 6.19 -24.63 -0.15 -1.95 16 5 C 0.04 0.83 6.36 -1.90 -0.01 0.82 16 6 N -0.50 -11.22 4.75 -225.39 -1.07 -12.29 16 7 C 0.18 4.62 5.30 -4.98 -0.03 4.59 16 8 C -0.56 -14.88 7.00 -34.44 -0.24 -15.12 16 9 H 0.06 1.64 6.00 -52.49 -0.31 1.32 16 10 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 11 N -0.88 -25.77 13.29 55.43 0.74 -25.04 16 12 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 13 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 16 C 0.08 1.53 2.26 -67.80 -0.15 1.38 16 17 H 0.12 2.56 4.82 -51.93 -0.25 2.31 16 18 C 0.49 9.77 5.42 36.00 0.20 9.96 16 19 O -0.51 -11.33 17.16 -18.75 -0.32 -11.65 16 20 O -0.53 -8.36 12.31 -39.27 -0.48 -8.84 16 21 H 0.06 0.88 6.63 -51.93 -0.34 0.53 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.06 0.93 7.42 -51.93 -0.39 0.54 16 24 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 0.91 7.87 -51.93 -0.41 0.50 16 28 H 0.07 1.06 7.85 -51.93 -0.41 0.65 16 29 H 0.06 1.19 7.04 -51.93 -0.37 0.82 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.04 1.02 8.08 -51.93 -0.42 0.60 16 33 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.40 4.40 9.10 45.56 0.41 4.81 16 LS Contribution 274.81 15.07 4.14 4.14 Total: -1.00 -31.18 274.81 -6.23 -37.41 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -4.15 Total: 3.69 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -0.06 Total: -3.22 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: -0.33 Total: -37.32 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.81 Total: -20.49 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.18 -6.23 -37.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885812357.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.492 kcal (2) G-P(sol) polarization free energy of solvation -31.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds