Wall clock time and date at job start Mon Mar 30 2020 03:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 110.27236 * 2 1 4 4 C 1.55035 * 110.29774 * 237.85463 * 2 1 3 5 5 C 1.54937 * 102.71769 * 219.14325 * 4 2 1 6 6 N 1.48531 * 103.37331 * 37.39814 * 5 4 2 7 7 C 1.46900 * 110.99995 * 200.19451 * 6 5 4 8 8 C 1.50699 * 109.46839 * 69.87635 * 7 6 5 9 9 H 1.07994 * 120.00331 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99760 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99920 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99899 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47159 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46865 * 119.99582 * 12 10 8 15 15 H 1.48497 * 109.47087 * 239.99632 * 12 10 8 16 16 C 1.47900 * 105.82345 * 320.71279 * 6 5 4 17 17 H 1.08997 * 109.91192 * 265.97584 * 16 6 5 18 18 C 1.50694 * 109.91642 * 144.68274 * 16 6 5 19 19 O 1.20825 * 120.00407 * 341.45418 * 18 16 6 20 20 O 1.34233 * 119.99868 * 161.45273 * 18 16 6 21 21 H 1.08995 * 109.47301 * 297.90830 * 1 2 3 22 22 H 1.09005 * 109.47002 * 57.90942 * 1 2 3 23 23 H 1.09000 * 109.46957 * 177.90578 * 1 2 3 24 24 H 1.09002 * 109.47268 * 182.08672 * 3 2 1 25 25 H 1.08993 * 109.47616 * 302.09299 * 3 2 1 26 26 H 1.09002 * 109.46831 * 62.09328 * 3 2 1 27 27 H 1.09004 * 110.90974 * 100.81172 * 4 2 1 28 28 H 1.09005 * 110.74113 * 337.39476 * 4 2 1 29 29 H 1.09002 * 110.66811 * 278.88221 * 5 4 2 30 30 H 1.09001 * 110.66542 * 155.91860 * 5 4 2 31 31 H 1.08997 * 109.47107 * 189.87797 * 7 6 5 32 32 H 1.09003 * 109.47145 * 309.87496 * 7 6 5 33 33 H 0.97007 * 119.99423 * 180.02562 * 11 10 8 34 34 H 0.96698 * 117.00181 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0602 1.4352 0.0000 4 6 2.0679 -0.7737 -1.2312 5 6 3.2856 -1.5353 -0.6501 6 7 2.8313 -1.9229 0.7099 7 6 3.9751 -2.2248 1.5808 8 6 4.7203 -0.9521 1.8906 9 1 4.3782 -0.0129 1.4817 10 6 5.8388 -0.9867 2.6960 11 7 6.2552 -2.1304 3.1942 12 14 6.7630 0.5908 3.0793 13 1 6.0958 1.7321 2.4030 14 1 6.7657 0.8187 4.5468 15 1 8.1615 0.4757 2.5936 16 6 2.0645 -0.7672 1.2235 17 1 2.7162 -0.1210 1.8115 18 6 0.9145 -1.2494 2.0696 19 8 0.5315 -2.3914 1.9745 20 8 0.3155 -0.4101 2.9291 21 1 -0.3634 0.4810 0.9081 22 1 -0.3633 0.5460 -0.8707 23 1 -0.3633 -1.0270 -0.0376 24 1 3.1494 1.4202 -0.0374 25 1 1.6739 1.9653 -0.8705 26 1 1.7348 1.9427 0.9082 27 1 2.3820 -0.0857 -2.0162 28 1 1.3191 -1.4718 -1.6057 29 1 4.1564 -0.8823 -0.5933 30 1 3.5075 -2.4192 -1.2481 31 1 3.6174 -2.6714 2.5085 32 1 4.6425 -2.9228 1.0753 33 1 7.0419 -2.1547 3.7612 34 1 -0.4179 -0.7649 3.4500 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885812357.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:55 Heat of formation + Delta-G solvation = -114.538472 kcal Electronic energy + Delta-G solvation = -17027.954860 eV Core-core repulsion = 14345.585798 eV Total energy + Delta-G solvation = -2682.369062 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.79247 -39.64576 -36.92891 -35.91748 -34.13019 -31.16133 -29.24572 -28.20594 -26.97878 -24.15400 -23.75459 -21.40863 -20.09441 -19.14968 -18.60384 -17.15210 -16.92728 -16.63280 -15.84195 -15.70313 -14.98072 -14.56177 -14.48203 -14.13962 -13.83864 -13.62522 -13.12674 -12.92374 -12.85796 -12.62097 -12.56728 -12.32248 -12.16384 -11.94405 -11.87108 -11.65984 -11.50786 -11.34685 -11.16954 -10.64665 -9.17369 -8.19706 -6.39591 1.35428 1.38169 1.39138 1.51110 2.15207 2.36240 3.06955 3.43559 3.53937 3.81849 3.94451 4.36435 4.45458 4.52013 4.55980 4.78265 4.80598 4.85479 4.94649 5.04466 5.07902 5.09948 5.22158 5.25324 5.26645 5.33770 5.51203 5.67094 5.70760 5.89297 6.15335 6.22810 6.79305 7.17592 7.32308 8.85273 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.027023 B = 0.010134 C = 0.009639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.910898 B = 2762.272176 C = 2904.263456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.058 4.058 3 C -0.134 4.134 4 C -0.103 4.103 5 C 0.039 3.961 6 N -0.517 5.517 7 C 0.193 3.807 8 C -0.559 4.559 9 H 0.076 0.924 10 C 0.011 3.989 11 N -0.928 5.928 12 Si 0.961 3.039 13 H -0.255 1.255 14 H -0.281 1.281 15 H -0.279 1.279 16 C 0.068 3.932 17 H 0.094 0.906 18 C 0.498 3.502 19 O -0.540 6.540 20 O -0.513 6.513 21 H 0.066 0.934 22 H 0.090 0.910 23 H 0.041 0.959 24 H 0.047 0.953 25 H 0.089 0.911 26 H 0.060 0.940 27 H 0.102 0.898 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.075 0.925 31 H -0.011 1.011 32 H 0.009 0.991 33 H 0.265 0.735 34 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.050 8.958 -6.712 15.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.059 4.059 3 C -0.191 4.191 4 C -0.141 4.141 5 C -0.089 4.089 6 N -0.241 5.241 7 C 0.066 3.934 8 C -0.597 4.597 9 H 0.094 0.906 10 C -0.189 4.189 11 N -0.567 5.567 12 Si 0.785 3.215 13 H -0.178 1.178 14 H -0.207 1.207 15 H -0.204 1.204 16 C -0.042 4.042 17 H 0.111 0.889 18 C 0.340 3.660 19 O -0.429 6.429 20 O -0.327 6.327 21 H 0.085 0.915 22 H 0.109 0.891 23 H 0.060 0.940 24 H 0.066 0.934 25 H 0.107 0.893 26 H 0.079 0.921 27 H 0.120 0.880 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.007 0.993 32 H 0.027 0.973 33 H 0.074 0.926 34 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -10.028 8.232 -6.867 14.679 hybrid contribution 0.954 0.305 1.256 1.606 sum -9.075 8.537 -5.611 13.664 Atomic orbital electron populations 1.22044 0.92766 1.01563 1.03830 1.21445 0.96773 0.95815 0.91879 1.21874 1.00676 0.93226 1.03326 1.22730 0.96400 0.98550 0.96417 1.23155 0.97571 0.99277 0.88852 1.64549 1.21901 1.34107 1.03592 1.19505 0.87286 0.95694 0.90900 1.22005 1.11737 0.94917 1.31047 0.90633 1.25920 0.98124 0.99567 0.95299 1.70113 1.25330 1.27347 1.33890 0.85458 0.78405 0.79621 0.78006 1.17838 1.20719 1.20435 1.22326 0.92048 0.93423 0.96416 0.88890 1.23516 0.82406 0.82904 0.77133 1.90614 1.64137 1.21350 1.66800 1.84531 1.50027 1.46166 1.51929 0.91518 0.89108 0.94014 0.93427 0.89258 0.92077 0.87994 0.90558 0.93565 0.90657 0.99309 0.97301 0.92582 0.71902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 7.26 71.98 0.52 -3.11 16 2 C -0.06 -1.72 0.97 -51.15 -0.05 -1.77 16 3 C -0.13 -3.37 8.22 71.98 0.59 -2.78 16 4 C -0.10 -2.92 6.19 31.95 0.20 -2.72 16 5 C 0.04 1.46 6.36 86.65 0.55 2.01 16 6 N -0.52 -23.58 4.75 -867.00 -4.11 -27.70 16 7 C 0.19 10.61 5.30 85.56 0.45 11.07 16 8 C -0.56 -30.34 7.00 25.60 0.18 -30.16 16 9 H 0.08 3.86 6.00 -2.91 -0.02 3.84 16 10 C 0.01 0.59 5.46 84.66 0.46 1.05 16 11 N -0.93 -55.65 13.29 21.45 0.28 -55.37 16 12 Si 0.96 42.70 29.54 68.60 2.03 44.72 16 13 H -0.25 -10.55 7.11 99.48 0.71 -9.84 16 14 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 15 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 16 C 0.07 2.72 2.26 44.31 0.10 2.82 16 17 H 0.09 4.13 4.82 -2.39 -0.01 4.12 16 18 C 0.50 19.51 5.42 71.23 0.39 19.90 16 19 O -0.54 -24.46 17.16 21.97 0.38 -24.08 16 20 O -0.51 -15.55 12.31 -51.45 -0.63 -16.18 16 21 H 0.07 1.62 6.63 -2.39 -0.02 1.61 16 22 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 23 H 0.04 1.20 7.42 -2.39 -0.02 1.18 16 24 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.09 1.66 8.14 -2.39 -0.02 1.65 16 26 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.10 2.25 7.87 -2.38 -0.02 2.23 16 28 H 0.08 2.09 7.85 -2.38 -0.02 2.07 16 29 H 0.05 1.85 7.04 -2.39 -0.02 1.83 16 30 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 31 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 32 H 0.01 0.52 8.08 -2.39 -0.02 0.50 16 33 H 0.27 14.93 8.31 -92.70 -0.77 14.16 16 34 H 0.42 8.52 9.10 -74.06 -0.67 7.84 16 Total: -1.00 -69.49 274.81 1.76 -67.73 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.42 Total: 14.56 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: 3.40 Total: -3.69 kcal Atomic # 7 Polarization: -79.23 SS G_CDS: -3.83 Total: -83.06 kcal Atomic # 8 Polarization: -40.01 SS G_CDS: -0.26 Total: -40.26 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -69.49 1.76 -67.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885812357.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.806 kcal (2) G-P(sol) polarization free energy of solvation -69.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds