Wall clock time and date at job start Mon Mar 30 2020 03:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 110.35366 * 2 1 4 4 C 1.54590 * 110.30944 * 237.85236 * 2 1 3 5 5 C 1.54937 * 102.92377 * 263.04006 * 4 2 1 6 6 N 1.48542 * 103.22650 * 322.58986 * 5 4 2 7 7 C 1.46897 * 110.99753 * 159.71822 * 6 5 4 8 8 C 1.50701 * 109.47437 * 52.60242 * 7 6 5 9 9 H 1.08001 * 119.99685 * 359.97438 * 8 7 6 10 10 C 1.37882 * 119.99919 * 179.97438 * 8 7 6 11 11 N 1.31507 * 120.00191 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 119.99541 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47722 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46956 * 119.99858 * 12 10 8 15 15 H 1.48499 * 109.47288 * 239.99822 * 12 10 8 16 16 C 1.47894 * 105.81916 * 39.20190 * 6 5 4 17 17 H 1.09006 * 110.08270 * 94.11721 * 16 6 5 18 18 C 1.50700 * 109.91620 * 215.31644 * 16 6 5 19 19 O 1.20822 * 119.99958 * 17.59130 * 18 16 6 20 20 O 1.34234 * 120.00068 * 197.59322 * 18 16 6 21 21 H 1.09003 * 109.47499 * 297.86176 * 1 2 3 22 22 H 1.08999 * 109.46962 * 57.86365 * 1 2 3 23 23 H 1.09004 * 109.47384 * 177.86224 * 1 2 3 24 24 H 1.09001 * 109.46893 * 182.14136 * 3 2 1 25 25 H 1.09008 * 109.46591 * 302.14046 * 3 2 1 26 26 H 1.08999 * 109.47256 * 62.13353 * 3 2 1 27 27 H 1.08995 * 110.72458 * 21.39925 * 4 2 1 28 28 H 1.09006 * 110.72325 * 144.50976 * 4 2 1 29 29 H 1.09004 * 110.66679 * 81.01639 * 5 4 2 30 30 H 1.08999 * 110.67440 * 203.98379 * 5 4 2 31 31 H 1.09008 * 109.47132 * 172.60100 * 7 6 5 32 32 H 1.09001 * 109.47625 * 292.59724 * 7 6 5 33 33 H 0.96996 * 120.00247 * 180.02562 * 11 10 8 34 34 H 0.96698 * 117.00153 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0621 1.4345 0.0000 4 6 2.0665 -0.7714 -1.2275 5 6 2.3584 -2.1797 -0.6513 6 7 2.8809 -1.8890 0.7085 7 6 2.7667 -3.0666 1.5792 8 6 3.4044 -4.2538 0.9047 9 1 3.8495 -4.1445 -0.0733 10 6 3.4195 -5.4795 1.5360 11 7 2.8779 -5.6124 2.7270 12 14 4.2092 -6.9512 0.6995 13 1 4.7431 -6.5409 -0.6240 14 1 5.3189 -7.4634 1.5431 15 1 3.1942 -8.0193 0.5149 16 6 2.0644 -0.7682 1.2230 17 1 1.2322 -1.1516 1.8134 18 6 2.9171 0.1421 2.0687 19 8 4.1214 0.0918 1.9851 20 8 2.3387 1.0089 2.9149 21 1 -0.3634 0.4803 0.9085 22 1 -0.3633 0.5467 -0.8702 23 1 -0.3634 -1.0270 -0.0383 24 1 3.1513 1.4179 -0.0384 25 1 1.6758 1.9653 -0.8703 26 1 1.7382 1.9422 0.9085 27 1 1.3103 -0.8243 -2.0106 28 1 2.9789 -0.3095 -1.6048 29 1 1.4433 -2.7691 -0.5938 30 1 3.1083 -2.6937 -1.2525 31 1 3.2733 -2.8702 2.5242 32 1 1.7143 -3.2781 1.7683 33 1 2.8888 -6.4746 3.1713 34 1 2.9268 1.5719 3.4366 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885812358.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:58 Heat of formation + Delta-G solvation = -92.702736 kcal Electronic energy + Delta-G solvation = -16715.351984 eV Core-core repulsion = 14033.929790 eV Total energy + Delta-G solvation = -2681.422194 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.39072 -38.22306 -35.57284 -34.23587 -32.22019 -29.68471 -27.83825 -27.26673 -24.95318 -22.71441 -22.05357 -19.90085 -18.84069 -17.52678 -16.53981 -15.69452 -15.64767 -14.86798 -14.49545 -14.12589 -13.42792 -13.27993 -12.99632 -12.74871 -12.53944 -12.01296 -11.87635 -11.54800 -11.34144 -11.11371 -11.01724 -10.82172 -10.72510 -10.50035 -10.35194 -10.17459 -9.88538 -9.78390 -9.13849 -8.49738 -7.43918 -6.06217 -4.07829 2.76247 3.30116 3.36912 3.38512 3.43067 4.40568 4.69963 4.79491 4.97917 5.19353 5.31051 5.47290 5.63692 5.69014 5.71170 5.77769 5.85034 5.98494 6.06577 6.09555 6.27986 6.31109 6.39851 6.59880 6.68471 6.90803 7.08348 7.25366 7.67692 7.92551 8.08544 8.37758 8.49734 8.98883 9.56544 11.05374 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.034370 B = 0.008171 C = 0.007393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.469362 B = 3426.104317 C = 3786.583940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.061 4.061 3 C -0.152 4.152 4 C -0.120 4.120 5 C 0.058 3.942 6 N -0.496 5.496 7 C 0.184 3.816 8 C -0.511 4.511 9 H 0.066 0.934 10 C 0.056 3.944 11 N -0.897 5.897 12 Si 0.900 3.100 13 H -0.271 1.271 14 H -0.283 1.283 15 H -0.284 1.284 16 C 0.080 3.920 17 H 0.079 0.921 18 C 0.489 3.511 19 O -0.491 6.491 20 O -0.528 6.528 21 H 0.059 0.941 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.045 0.955 30 H 0.085 0.915 31 H 0.031 0.969 32 H -0.004 1.004 33 H 0.261 0.739 34 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.244 12.233 -4.639 14.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.061 4.061 3 C -0.209 4.209 4 C -0.158 4.158 5 C -0.069 4.069 6 N -0.222 5.222 7 C 0.059 3.941 8 C -0.550 4.550 9 H 0.084 0.916 10 C -0.145 4.145 11 N -0.536 5.536 12 Si 0.727 3.273 13 H -0.196 1.196 14 H -0.210 1.210 15 H -0.211 1.211 16 C -0.031 4.031 17 H 0.097 0.903 18 C 0.329 3.671 19 O -0.376 6.376 20 O -0.340 6.340 21 H 0.078 0.922 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.050 0.950 32 H 0.014 0.986 33 H 0.071 0.929 34 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -4.627 11.946 -4.762 13.667 hybrid contribution 0.019 -0.811 0.301 0.865 sum -4.607 11.135 -4.461 12.849 Atomic orbital electron populations 1.21898 0.93433 1.02247 1.01892 1.21285 0.95730 0.95233 0.93898 1.22100 1.01413 0.95123 1.02256 1.22745 1.00692 0.96454 0.95901 1.22961 0.99030 0.94460 0.90455 1.64440 1.48210 1.06532 1.02969 1.19977 0.95567 0.85903 0.92672 1.21182 1.37073 0.92754 1.03949 0.91579 1.24995 0.95540 0.99059 0.94944 1.69965 1.45024 1.24684 1.13913 0.86411 0.78998 0.82223 0.79626 1.19593 1.20958 1.21068 1.22070 0.93591 0.93047 0.94390 0.90328 1.23400 0.88078 0.78343 0.77289 1.90679 1.16139 1.66288 1.64490 1.84576 1.45897 1.50221 1.53279 0.92232 0.92256 0.92144 0.92090 0.92136 0.91753 0.91199 0.90900 0.93622 0.89710 0.95047 0.98642 0.92898 0.74256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.21 37.16 0.31 -1.39 16 2 C -0.06 -0.90 0.97 -153.15 -0.15 -1.04 16 3 C -0.15 -1.99 7.26 37.16 0.27 -1.72 16 4 C -0.12 -1.81 6.16 -24.87 -0.15 -1.96 16 5 C 0.06 1.13 5.54 -1.89 -0.01 1.11 16 6 N -0.50 -11.14 4.59 -225.37 -1.03 -12.17 16 7 C 0.18 4.92 4.79 -4.98 -0.02 4.89 16 8 C -0.51 -14.49 8.56 -34.44 -0.29 -14.78 16 9 H 0.07 1.84 6.52 -52.49 -0.34 1.50 16 10 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 11 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 12 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 13 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 C 0.08 1.50 2.64 -67.80 -0.18 1.32 16 17 H 0.08 1.50 7.12 -51.93 -0.37 1.13 16 18 C 0.49 9.08 5.44 36.01 0.20 9.28 16 19 O -0.49 -10.82 17.19 -18.75 -0.32 -11.15 16 20 O -0.53 -7.54 12.24 -39.27 -0.48 -8.02 16 21 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.06 0.91 7.45 -51.93 -0.39 0.52 16 25 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 26 H 0.06 0.81 6.59 -51.93 -0.34 0.46 16 27 H 0.07 0.88 7.85 -51.93 -0.41 0.47 16 28 H 0.07 1.10 7.84 -51.93 -0.41 0.69 16 29 H 0.05 0.89 8.02 -51.93 -0.42 0.48 16 30 H 0.08 1.69 7.15 -51.93 -0.37 1.32 16 31 H 0.03 0.93 8.14 -51.92 -0.42 0.51 16 32 H 0.00 -0.11 7.82 -51.93 -0.41 -0.52 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.40 3.90 9.10 45.56 0.41 4.32 16 LS Contribution 277.68 15.07 4.18 4.18 Total: -1.00 -32.81 277.68 -6.36 -39.17 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -4.28 Total: 0.11 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -0.14 Total: -2.78 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: -0.30 Total: -38.28 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.80 Total: -19.16 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.81 -6.36 -39.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885812358.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.534 kcal (2) G-P(sol) polarization free energy of solvation -32.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds