Wall clock time and date at job start Mon Mar 30 2020 03:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 110.35366 * 2 1 4 4 C 1.54590 * 110.30944 * 237.85236 * 2 1 3 5 5 C 1.54937 * 102.92377 * 263.04006 * 4 2 1 6 6 N 1.48542 * 103.22650 * 322.58986 * 5 4 2 7 7 C 1.46897 * 110.99753 * 159.71822 * 6 5 4 8 8 C 1.50701 * 109.47437 * 52.60242 * 7 6 5 9 9 H 1.08001 * 119.99685 * 359.97438 * 8 7 6 10 10 C 1.37882 * 119.99919 * 179.97438 * 8 7 6 11 11 N 1.31507 * 120.00191 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 119.99541 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47722 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46956 * 119.99858 * 12 10 8 15 15 H 1.48499 * 109.47288 * 239.99822 * 12 10 8 16 16 C 1.47894 * 105.81916 * 39.20190 * 6 5 4 17 17 H 1.09006 * 110.08270 * 94.11721 * 16 6 5 18 18 C 1.50700 * 109.91620 * 215.31644 * 16 6 5 19 19 O 1.20822 * 119.99958 * 17.59130 * 18 16 6 20 20 O 1.34234 * 120.00068 * 197.59322 * 18 16 6 21 21 H 1.09003 * 109.47499 * 297.86176 * 1 2 3 22 22 H 1.08999 * 109.46962 * 57.86365 * 1 2 3 23 23 H 1.09004 * 109.47384 * 177.86224 * 1 2 3 24 24 H 1.09001 * 109.46893 * 182.14136 * 3 2 1 25 25 H 1.09008 * 109.46591 * 302.14046 * 3 2 1 26 26 H 1.08999 * 109.47256 * 62.13353 * 3 2 1 27 27 H 1.08995 * 110.72458 * 21.39925 * 4 2 1 28 28 H 1.09006 * 110.72325 * 144.50976 * 4 2 1 29 29 H 1.09004 * 110.66679 * 81.01639 * 5 4 2 30 30 H 1.08999 * 110.67440 * 203.98379 * 5 4 2 31 31 H 1.09008 * 109.47132 * 172.60100 * 7 6 5 32 32 H 1.09001 * 109.47625 * 292.59724 * 7 6 5 33 33 H 0.96996 * 120.00247 * 180.02562 * 11 10 8 34 34 H 0.96698 * 117.00153 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0621 1.4345 0.0000 4 6 2.0665 -0.7714 -1.2275 5 6 2.3584 -2.1797 -0.6513 6 7 2.8809 -1.8890 0.7085 7 6 2.7667 -3.0666 1.5792 8 6 3.4044 -4.2538 0.9047 9 1 3.8495 -4.1445 -0.0733 10 6 3.4195 -5.4795 1.5360 11 7 2.8779 -5.6124 2.7270 12 14 4.2092 -6.9512 0.6995 13 1 4.7431 -6.5409 -0.6240 14 1 5.3189 -7.4634 1.5431 15 1 3.1942 -8.0193 0.5149 16 6 2.0644 -0.7682 1.2230 17 1 1.2322 -1.1516 1.8134 18 6 2.9171 0.1421 2.0687 19 8 4.1214 0.0918 1.9851 20 8 2.3387 1.0089 2.9149 21 1 -0.3634 0.4803 0.9085 22 1 -0.3633 0.5467 -0.8702 23 1 -0.3634 -1.0270 -0.0383 24 1 3.1513 1.4179 -0.0384 25 1 1.6758 1.9653 -0.8703 26 1 1.7382 1.9422 0.9085 27 1 1.3103 -0.8243 -2.0106 28 1 2.9789 -0.3095 -1.6048 29 1 1.4433 -2.7691 -0.5938 30 1 3.1083 -2.6937 -1.2525 31 1 3.2733 -2.8702 2.5242 32 1 1.7143 -3.2781 1.7683 33 1 2.8888 -6.4746 3.1713 34 1 2.9268 1.5719 3.4366 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885812358.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:58 Heat of formation + Delta-G solvation = -116.835510 kcal Electronic energy + Delta-G solvation = -16716.398460 eV Core-core repulsion = 14033.929790 eV Total energy + Delta-G solvation = -2682.468669 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.83225 -39.66320 -36.99091 -35.96308 -34.17941 -31.13542 -29.64300 -28.29735 -26.70579 -24.33851 -23.69419 -21.49310 -20.15492 -19.02040 -18.43962 -17.36159 -17.13607 -16.62042 -15.88983 -15.76139 -15.02739 -14.57642 -14.52904 -14.33420 -13.87392 -13.74163 -13.13594 -12.93397 -12.87851 -12.68869 -12.63235 -12.39287 -12.27208 -12.08765 -11.84781 -11.64562 -11.41755 -11.29706 -11.16550 -10.69041 -9.23121 -8.26542 -6.37064 1.28491 1.38399 1.40123 1.53504 2.03765 2.37612 3.07056 3.31112 3.43521 3.76730 3.84035 4.25637 4.33273 4.40518 4.46138 4.62800 4.78253 4.83433 4.88519 5.00808 5.04100 5.04805 5.11597 5.20629 5.27718 5.31302 5.45947 5.57162 5.64328 5.87260 6.14995 6.38645 6.78010 7.11703 7.32965 8.86130 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.034370 B = 0.008171 C = 0.007393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.469362 B = 3426.104317 C = 3786.583940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.056 4.056 3 C -0.145 4.145 4 C -0.107 4.107 5 C 0.054 3.946 6 N -0.515 5.515 7 C 0.203 3.797 8 C -0.529 4.529 9 H 0.067 0.933 10 C 0.001 3.999 11 N -0.933 5.933 12 Si 0.974 3.026 13 H -0.262 1.262 14 H -0.280 1.280 15 H -0.273 1.273 16 C 0.069 3.931 17 H 0.071 0.929 18 C 0.496 3.504 19 O -0.534 6.534 20 O -0.511 6.511 21 H 0.065 0.935 22 H 0.090 0.910 23 H 0.049 0.951 24 H 0.039 0.961 25 H 0.091 0.909 26 H 0.070 0.930 27 H 0.105 0.895 28 H 0.074 0.926 29 H 0.038 0.962 30 H 0.072 0.928 31 H -0.011 1.011 32 H -0.025 1.025 33 H 0.266 0.734 34 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.031 13.223 -6.267 15.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.057 4.057 3 C -0.202 4.202 4 C -0.145 4.145 5 C -0.073 4.073 6 N -0.241 5.241 7 C 0.077 3.923 8 C -0.567 4.567 9 H 0.085 0.915 10 C -0.197 4.197 11 N -0.573 5.573 12 Si 0.798 3.202 13 H -0.185 1.185 14 H -0.206 1.206 15 H -0.199 1.199 16 C -0.042 4.042 17 H 0.089 0.911 18 C 0.338 3.662 19 O -0.422 6.422 20 O -0.325 6.325 21 H 0.084 0.916 22 H 0.109 0.891 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.110 0.890 26 H 0.089 0.911 27 H 0.123 0.877 28 H 0.093 0.907 29 H 0.056 0.944 30 H 0.090 0.910 31 H 0.007 0.993 32 H -0.008 1.008 33 H 0.075 0.925 34 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -5.433 12.978 -6.384 15.450 hybrid contribution 0.233 -1.043 0.886 1.388 sum -5.200 11.935 -5.498 14.132 Atomic orbital electron populations 1.21887 0.91121 1.02246 1.03740 1.21383 0.97447 0.95561 0.91275 1.22052 1.00016 0.94080 1.04096 1.22724 1.01943 0.93148 0.96685 1.22998 0.98087 0.97329 0.88892 1.64275 1.50230 1.05769 1.03776 1.19542 0.93387 0.87660 0.91755 1.21493 1.37329 0.93705 1.04163 0.91452 1.25972 0.95891 1.02289 0.95536 1.70093 1.46092 1.25709 1.15436 0.85268 0.78069 0.78167 0.78726 1.18544 1.20628 1.19874 1.22288 0.92885 0.92584 0.96460 0.91083 1.23337 0.87318 0.78372 0.77206 1.90664 1.17750 1.67797 1.66017 1.84504 1.45827 1.49616 1.52503 0.91587 0.89125 0.93209 0.94220 0.88981 0.91115 0.87653 0.90734 0.94356 0.90998 0.99328 1.00782 0.92547 0.71613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.21 71.98 0.59 -2.26 16 2 C -0.06 -1.53 0.97 -51.30 -0.05 -1.58 16 3 C -0.15 -3.39 7.26 71.98 0.52 -2.86 16 4 C -0.11 -2.99 6.16 31.80 0.20 -2.80 16 5 C 0.05 2.09 5.54 86.65 0.48 2.57 16 6 N -0.52 -23.83 4.59 -866.93 -3.98 -27.81 16 7 C 0.20 11.41 4.79 85.56 0.41 11.82 16 8 C -0.53 -30.88 8.56 25.60 0.22 -30.66 16 9 H 0.07 3.82 6.52 -2.91 -0.02 3.81 16 10 C 0.00 0.08 5.46 84.66 0.46 0.55 16 11 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 12 Si 0.97 45.02 29.54 68.60 2.03 47.05 16 13 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 14 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 15 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 16 C 0.07 2.58 2.64 44.31 0.12 2.70 16 17 H 0.07 2.77 7.12 -2.38 -0.02 2.75 16 18 C 0.50 18.42 5.44 71.24 0.39 18.81 16 19 O -0.53 -23.99 17.19 21.98 0.38 -23.61 16 20 O -0.51 -13.89 12.24 -51.46 -0.63 -14.52 16 21 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.04 1.10 7.45 -2.39 -0.02 1.09 16 25 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 26 H 0.07 1.55 6.59 -2.39 -0.02 1.54 16 27 H 0.11 2.23 7.85 -2.39 -0.02 2.21 16 28 H 0.07 2.08 7.84 -2.38 -0.02 2.06 16 29 H 0.04 1.52 8.02 -2.39 -0.02 1.50 16 30 H 0.07 2.91 7.15 -2.39 -0.02 2.89 16 31 H -0.01 -0.72 8.14 -2.38 -0.02 -0.74 16 32 H -0.03 -1.49 7.82 -2.39 -0.02 -1.51 16 33 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 34 H 0.42 7.50 9.10 -74.06 -0.67 6.82 16 Total: -1.00 -73.47 277.68 1.83 -71.63 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: 0.42 Total: 8.00 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 3.34 Total: -3.72 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -3.70 Total: -84.83 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -0.25 Total: -38.13 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -73.47 1.83 -71.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885812358.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.202 kcal (2) G-P(sol) polarization free energy of solvation -73.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds