Wall clock time and date at job start Mon Mar 30 2020 02:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42900 * 112.94035 * 50.33270 * 9 7 2 11 11 C 1.53944 * 113.73527 * 278.76760 * 9 7 2 12 12 N 1.48189 * 86.09920 * 221.95783 * 11 9 7 13 13 C 1.46904 * 111.06803 * 137.52150 * 12 11 9 14 14 C 1.52994 * 109.47076 * 90.56485 * 13 12 11 15 15 O 1.42894 * 109.47398 * 65.00344 * 14 13 12 16 16 C 1.42907 * 114.00439 * 179.97438 * 15 14 13 17 17 C 1.52996 * 117.49886 * 218.61970 * 16 15 14 18 18 C 1.53000 * 117.49959 * 149.99452 * 16 15 14 19 19 C 1.47960 * 90.80220 * 24.60019 * 12 11 9 20 20 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 21 21 H 0.96699 * 113.99865 * 309.67049 * 10 9 7 22 22 H 1.08996 * 113.75681 * 336.24186 * 11 9 7 23 23 H 1.08999 * 113.75828 * 107.60395 * 11 9 7 24 24 H 1.09003 * 109.46971 * 210.56350 * 13 12 11 25 25 H 1.09005 * 109.47286 * 330.56060 * 13 12 11 26 26 H 1.09004 * 109.47094 * 184.99752 * 14 13 12 27 27 H 1.08997 * 109.47240 * 304.99608 * 14 13 12 28 28 H 1.08998 * 115.54256 * 4.32766 * 16 15 14 29 29 H 1.08996 * 117.50054 * 359.97438 * 17 16 15 30 30 H 1.09002 * 117.49555 * 145.02278 * 17 16 15 31 31 H 1.09000 * 117.49807 * 214.97824 * 18 16 15 32 32 H 1.09001 * 117.50024 * 359.97438 * 18 16 15 33 33 H 1.09000 * 113.75922 * 221.08463 * 19 12 11 34 34 H 1.08994 * 113.76148 * 89.71731 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2447 -2.5612 -1.0132 11 6 0.7557 -2.9287 1.3923 12 7 1.1893 -4.2943 1.0139 13 6 1.8776 -4.9578 2.1293 14 6 0.8588 -5.7280 2.9716 15 8 0.2975 -6.7853 2.1912 16 6 -0.6713 -7.5712 2.8884 17 6 -0.6728 -9.0798 2.6335 18 6 -1.7921 -8.2064 2.0630 19 6 2.1610 -3.7400 0.0456 20 1 -0.4850 0.8401 0.0004 21 1 -0.3473 -1.7968 -1.0267 22 1 1.3280 -2.4980 2.2139 23 1 -0.3216 -2.8297 1.5251 24 1 2.6219 -5.6505 1.7363 25 1 2.3700 -4.2089 2.7496 26 1 1.3540 -6.1467 3.8477 27 1 0.0659 -5.0516 3.2910 28 1 -0.9179 -7.2300 3.8938 29 1 0.0647 -9.4728 1.9338 30 1 -0.9205 -9.7315 3.4714 31 1 -2.7760 -8.2836 2.5256 32 1 -1.7908 -8.0245 0.9883 33 1 2.2043 -4.2880 -0.8956 34 1 3.1451 -3.5472 0.4725 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169631040.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:24 Heat of formation + Delta-G solvation = -28.164909 kcal Electronic energy + Delta-G solvation = -15928.472336 eV Core-core repulsion = 13249.848713 eV Total energy + Delta-G solvation = -2678.623623 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.03766 -38.11357 -35.11611 -33.96982 -32.05383 -30.12991 -26.59837 -25.03836 -23.91922 -22.34744 -21.79379 -20.93058 -18.57548 -17.23182 -16.93371 -15.49025 -15.19610 -15.04731 -14.58372 -14.15417 -13.80059 -13.58179 -13.11992 -12.35117 -11.98201 -11.94346 -11.57418 -11.49215 -11.35313 -11.03989 -10.98400 -10.60469 -10.49631 -10.37275 -10.17894 -9.96259 -9.25075 -8.88978 -8.60942 -8.15896 -7.71376 -6.23356 -4.33573 3.21879 3.27397 3.29870 3.70384 3.90880 4.27062 4.79701 4.85237 5.00184 5.02333 5.16947 5.38713 5.51591 5.58992 5.63917 5.66396 5.91260 5.95677 6.04620 6.10711 6.18431 6.20347 6.38428 6.48243 6.75686 7.08302 7.26118 7.39593 7.51472 7.78299 8.02899 8.07895 8.68123 9.36365 9.67141 10.82373 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.053900 B = 0.005550 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.357431 B = 5044.005853 C = 5176.932563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.285 1.285 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.064 0.936 9 C 0.245 3.755 10 O -0.571 6.571 11 C -0.016 4.016 12 N -0.469 5.469 13 C 0.018 3.982 14 C 0.077 3.923 15 O -0.337 6.337 16 C 0.019 3.981 17 C -0.194 4.194 18 C -0.184 4.184 19 C 0.009 3.991 20 H 0.271 0.729 21 H 0.387 0.613 22 H 0.058 0.942 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.055 0.945 26 H 0.044 0.956 27 H 0.050 0.950 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.146 -10.133 6.989 12.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.210 1.210 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.577 4.577 8 H 0.082 0.918 9 C 0.204 3.796 10 O -0.382 6.382 11 C -0.145 4.145 12 N -0.192 5.192 13 C -0.111 4.111 14 C 0.000 4.000 15 O -0.255 6.255 16 C -0.040 4.040 17 C -0.232 4.232 18 C -0.222 4.222 19 C -0.120 4.120 20 H 0.081 0.919 21 H 0.241 0.759 22 H 0.076 0.924 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.122 0.878 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.093 0.907 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.438 -11.098 6.463 12.850 hybrid contribution 0.734 1.965 0.911 2.287 sum 0.296 -9.133 7.374 11.742 Atomic orbital electron populations 1.69430 1.06080 1.27835 1.50430 1.25058 0.94973 0.99570 0.93478 0.86486 0.79563 0.82166 0.78805 1.21029 1.20119 1.19956 1.21633 0.93633 0.90799 1.51672 0.91761 1.19730 0.85393 0.90710 0.83816 1.86055 1.47012 1.49459 1.55643 1.24819 1.00673 0.87427 1.01548 1.68606 1.25475 1.16342 1.08773 1.22676 0.95570 0.97854 0.95032 1.22490 0.96114 0.88396 0.92957 1.87978 1.55552 1.43905 1.38061 1.22598 0.94337 0.91116 0.95943 1.23362 1.02258 0.93759 1.03795 1.23294 0.93802 1.03632 1.01439 1.24104 0.94769 0.96676 0.96451 0.91913 0.75919 0.92391 0.91062 0.91085 0.92742 0.93787 0.93188 0.87819 0.88381 0.88717 0.88545 0.87960 0.90716 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.31 11.20 55.43 0.62 -23.69 16 2 C 0.07 1.89 5.40 -17.82 -0.10 1.80 16 3 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -14.56 8.61 -34.44 -0.30 -14.86 16 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.24 6.36 1.40 -90.83 -0.13 6.23 16 10 O -0.57 -15.91 13.48 -35.23 -0.48 -16.38 16 11 C -0.02 -0.37 7.37 -2.63 -0.02 -0.39 16 12 N -0.47 -10.28 6.11 -238.02 -1.45 -11.73 16 13 C 0.02 0.32 5.18 -3.83 -0.02 0.30 16 14 C 0.08 1.22 6.13 37.15 0.23 1.45 16 15 O -0.34 -5.81 10.54 -35.23 -0.37 -6.18 16 16 C 0.02 0.25 6.44 -26.73 -0.17 0.08 16 17 C -0.19 -2.21 10.48 -26.73 -0.28 -2.49 16 18 C -0.18 -2.28 10.48 -26.73 -0.28 -2.56 16 19 C 0.01 0.20 7.34 -2.76 -0.02 0.18 16 20 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 21 H 0.39 10.85 6.60 45.56 0.30 11.15 16 22 H 0.06 1.33 7.44 -51.93 -0.39 0.95 16 23 H 0.07 1.77 8.14 -51.93 -0.42 1.35 16 24 H 0.07 1.20 8.08 -51.93 -0.42 0.78 16 25 H 0.05 0.91 7.39 -51.93 -0.38 0.53 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.10 1.19 7.93 -51.93 -0.41 0.78 16 29 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.07 1.70 8.14 -51.93 -0.42 1.27 16 34 H 0.06 1.32 7.87 -51.93 -0.41 0.91 16 LS Contribution 287.58 15.07 4.33 4.33 Total: -1.00 -29.08 287.58 -8.09 -37.16 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -4.64 Total: 11.31 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -1.08 Total: -10.26 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: -0.83 Total: -35.42 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.85 Total: -22.57 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.08 -8.09 -37.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169631040.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.000 kcal (2) G-P(sol) polarization free energy of solvation -29.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds