Wall clock time and date at job start Mon Mar 30 2020 02:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42900 * 112.94035 * 50.33270 * 9 7 2 11 11 C 1.53944 * 113.73527 * 278.76760 * 9 7 2 12 12 N 1.48189 * 86.09920 * 221.95783 * 11 9 7 13 13 C 1.46904 * 111.06803 * 137.52150 * 12 11 9 14 14 C 1.52994 * 109.47076 * 90.56485 * 13 12 11 15 15 O 1.42894 * 109.47398 * 65.00344 * 14 13 12 16 16 C 1.42907 * 114.00439 * 179.97438 * 15 14 13 17 17 C 1.52996 * 117.49886 * 218.61970 * 16 15 14 18 18 C 1.53000 * 117.49959 * 149.99452 * 16 15 14 19 19 C 1.47960 * 90.80220 * 24.60019 * 12 11 9 20 20 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 21 21 H 0.96699 * 113.99865 * 309.67049 * 10 9 7 22 22 H 1.08996 * 113.75681 * 336.24186 * 11 9 7 23 23 H 1.08999 * 113.75828 * 107.60395 * 11 9 7 24 24 H 1.09003 * 109.46971 * 210.56350 * 13 12 11 25 25 H 1.09005 * 109.47286 * 330.56060 * 13 12 11 26 26 H 1.09004 * 109.47094 * 184.99752 * 14 13 12 27 27 H 1.08997 * 109.47240 * 304.99608 * 14 13 12 28 28 H 1.08998 * 115.54256 * 4.32766 * 16 15 14 29 29 H 1.08996 * 117.50054 * 359.97438 * 17 16 15 30 30 H 1.09002 * 117.49555 * 145.02278 * 17 16 15 31 31 H 1.09000 * 117.49807 * 214.97824 * 18 16 15 32 32 H 1.09001 * 117.50024 * 359.97438 * 18 16 15 33 33 H 1.09000 * 113.75922 * 221.08463 * 19 12 11 34 34 H 1.08994 * 113.76148 * 89.71731 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2447 -2.5612 -1.0132 11 6 0.7557 -2.9287 1.3923 12 7 1.1893 -4.2943 1.0139 13 6 1.8776 -4.9578 2.1293 14 6 0.8588 -5.7280 2.9716 15 8 0.2975 -6.7853 2.1912 16 6 -0.6713 -7.5712 2.8884 17 6 -0.6728 -9.0798 2.6335 18 6 -1.7921 -8.2064 2.0630 19 6 2.1610 -3.7400 0.0456 20 1 -0.4850 0.8401 0.0004 21 1 -0.3473 -1.7968 -1.0267 22 1 1.3280 -2.4980 2.2139 23 1 -0.3216 -2.8297 1.5251 24 1 2.6219 -5.6505 1.7363 25 1 2.3700 -4.2089 2.7496 26 1 1.3540 -6.1467 3.8477 27 1 0.0659 -5.0516 3.2910 28 1 -0.9179 -7.2300 3.8938 29 1 0.0647 -9.4728 1.9338 30 1 -0.9205 -9.7315 3.4714 31 1 -2.7760 -8.2836 2.5256 32 1 -1.7908 -8.0245 0.9883 33 1 2.2043 -4.2880 -0.8956 34 1 3.1451 -3.5472 0.4725 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169631040.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:23 Heat of formation + Delta-G solvation = -50.701650 kcal Electronic energy + Delta-G solvation = -15929.449602 eV Core-core repulsion = 13249.848713 eV Total energy + Delta-G solvation = -2679.600890 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.77987 -39.29326 -36.56098 -35.59000 -34.12508 -31.66818 -28.46426 -26.88561 -25.62452 -23.26288 -22.81217 -22.46576 -20.49633 -19.20335 -18.09951 -17.19740 -16.95767 -16.35374 -16.16966 -15.77077 -15.33720 -15.03655 -14.56714 -14.02840 -13.82839 -13.43053 -13.31258 -12.98545 -12.74210 -12.60356 -12.39951 -12.26837 -12.18993 -11.89986 -11.68677 -11.32644 -11.14328 -10.62301 -10.12908 -9.97119 -9.50630 -8.23531 -6.42285 1.43226 1.45078 1.53131 2.37880 2.61810 2.95233 2.97373 3.14325 3.89335 3.91819 4.05115 4.06267 4.15143 4.34640 4.36695 4.38913 4.47401 4.60346 4.63867 4.74587 4.76527 4.87559 4.92222 5.03218 5.14361 5.26122 5.41439 5.53943 5.74387 5.99779 6.29862 6.46776 6.63151 7.30862 7.51354 8.81236 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.053900 B = 0.005550 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.357431 B = 5044.005853 C = 5176.932563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.027 3.973 3 Si 0.968 3.032 4 H -0.281 1.281 5 H -0.268 1.268 6 H -0.273 1.273 7 C -0.563 4.563 8 H 0.065 0.935 9 C 0.217 3.783 10 O -0.586 6.586 11 C -0.002 4.002 12 N -0.479 5.479 13 C 0.015 3.985 14 C 0.081 3.919 15 O -0.371 6.371 16 C -0.005 4.005 17 C -0.176 4.176 18 C -0.192 4.192 19 C 0.017 3.983 20 H 0.273 0.727 21 H 0.381 0.619 22 H 0.063 0.937 23 H 0.050 0.950 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.041 0.959 28 H 0.125 0.875 29 H 0.089 0.911 30 H 0.124 0.876 31 H 0.119 0.881 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.613 -10.594 8.379 13.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.172 4.172 3 Si 0.793 3.207 4 H -0.206 1.206 5 H -0.192 1.192 6 H -0.198 1.198 7 C -0.601 4.601 8 H 0.084 0.916 9 C 0.176 3.824 10 O -0.397 6.397 11 C -0.131 4.131 12 N -0.202 5.202 13 C -0.114 4.114 14 C 0.004 3.996 15 O -0.290 6.290 16 C -0.063 4.063 17 C -0.213 4.213 18 C -0.230 4.230 19 C -0.112 4.112 20 H 0.083 0.917 21 H 0.234 0.766 22 H 0.082 0.918 23 H 0.069 0.931 24 H 0.099 0.901 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.059 0.941 28 H 0.142 0.858 29 H 0.108 0.892 30 H 0.143 0.857 31 H 0.137 0.863 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.325 -11.582 7.860 14.001 hybrid contribution 0.471 2.039 0.467 2.144 sum 0.796 -9.543 8.326 12.690 Atomic orbital electron populations 1.69517 1.07275 1.28699 1.50498 1.25829 0.95784 1.02754 0.92883 0.85456 0.78309 0.78019 0.78914 1.20596 1.19248 1.19811 1.21896 0.93870 0.91797 1.52516 0.91643 1.20147 0.85823 0.91947 0.84477 1.86040 1.47532 1.49243 1.56850 1.24551 0.99364 0.88705 1.00468 1.68525 1.26142 1.15275 1.10282 1.22794 0.96258 0.98197 0.94145 1.22477 0.95593 0.88176 0.93361 1.87913 1.56702 1.44547 1.39799 1.22960 0.94353 0.92148 0.96812 1.23424 1.00964 0.92763 1.04135 1.23367 0.95115 1.04159 1.00324 1.24047 0.95237 0.95087 0.96826 0.91693 0.76607 0.91848 0.93095 0.90084 0.91430 0.90292 0.94104 0.85762 0.89208 0.85740 0.86315 0.90145 0.91241 0.90068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.15 11.20 21.45 0.24 -49.91 16 2 C 0.03 1.45 5.40 84.66 0.46 1.91 16 3 Si 0.97 41.54 29.54 68.60 2.03 43.57 16 4 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.56 -30.37 8.61 25.60 0.22 -30.15 16 8 H 0.07 3.42 7.81 -2.91 -0.02 3.39 16 9 C 0.22 11.35 1.40 -10.89 -0.02 11.33 16 10 O -0.59 -33.47 13.48 -148.98 -2.01 -35.48 16 11 C 0.00 -0.07 7.37 86.37 0.64 0.57 16 12 N -0.48 -20.80 6.11 -910.15 -5.56 -26.36 16 13 C 0.01 0.50 5.18 86.30 0.45 0.94 16 14 C 0.08 2.40 6.13 71.98 0.44 2.84 16 15 O -0.37 -12.39 10.54 -148.98 -1.57 -13.96 16 16 C 0.00 -0.12 6.44 30.59 0.20 0.07 16 17 C -0.18 -3.61 10.48 30.59 0.32 -3.29 16 18 C -0.19 -4.52 10.48 30.60 0.32 -4.20 16 19 C 0.02 0.75 7.34 86.41 0.63 1.39 16 20 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 21 H 0.38 22.06 6.60 -74.06 -0.49 21.58 16 22 H 0.06 2.89 7.44 -2.39 -0.02 2.87 16 23 H 0.05 2.59 8.14 -2.39 -0.02 2.57 16 24 H 0.08 2.57 8.08 -2.39 -0.02 2.55 16 25 H 0.07 2.11 7.39 -2.38 -0.02 2.09 16 26 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 27 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.12 2.55 7.93 -2.39 -0.02 2.53 16 29 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 34 H 0.08 3.30 7.87 -2.39 -0.02 3.28 16 Total: -1.00 -61.89 287.58 -2.62 -64.51 By element: Atomic # 1 Polarization: 35.63 SS G_CDS: 0.59 Total: 36.22 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: 3.66 Total: -18.58 kcal Atomic # 7 Polarization: -70.95 SS G_CDS: -5.32 Total: -76.27 kcal Atomic # 8 Polarization: -45.86 SS G_CDS: -3.58 Total: -49.44 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -61.89 -2.62 -64.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169631040.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.806 kcal (2) G-P(sol) polarization free energy of solvation -61.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds