Wall clock time and date at job start Mon Mar 30 2020 03:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.46692 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47025 * 300.00081 * 3 2 1 6 6 H 1.48505 * 109.46672 * 60.00083 * 3 2 1 7 7 C 1.37876 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00339 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.47476 * 300.00008 * 9 7 2 11 11 O 1.42903 * 109.47062 * 59.99689 * 9 7 2 12 12 C 1.52993 * 109.47429 * 179.97438 * 9 7 2 13 13 N 1.46906 * 109.47378 * 179.97438 * 12 9 7 14 14 C 1.48558 * 110.99800 * 69.87584 * 13 12 9 15 15 C 1.54381 * 104.59376 * 159.04098 * 14 13 12 16 16 H 1.08997 * 117.60287 * 197.01238 * 15 14 13 17 17 C 1.53001 * 118.12894 * 41.48971 * 15 14 13 18 18 C 1.54261 * 105.06119 * 336.14561 * 15 14 13 19 19 C 1.53001 * 121.78775 * 222.13087 * 18 15 14 20 20 O 1.42902 * 109.46899 * 180.02562 * 19 18 15 21 21 C 1.48565 * 110.99816 * 185.29519 * 13 12 9 22 22 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 23 23 H 0.96698 * 113.99903 * 60.00438 * 11 9 7 24 24 H 1.09004 * 109.46862 * 60.00067 * 12 9 7 25 25 H 1.09000 * 109.47250 * 300.00090 * 12 9 7 26 26 H 1.08994 * 110.41119 * 277.82056 * 14 13 12 27 27 H 1.09000 * 110.41080 * 40.26343 * 14 13 12 28 28 H 1.08995 * 117.43861 * 15.97756 * 17 15 14 29 29 H 1.09002 * 117.43959 * 160.72706 * 17 15 14 30 30 H 1.09007 * 109.46610 * 299.99963 * 19 18 15 31 31 H 1.08997 * 109.47413 * 59.99886 * 19 18 15 32 32 H 0.96701 * 113.99596 * 179.97438 * 20 19 18 33 33 H 1.08995 * 110.41094 * 319.73458 * 21 13 12 34 34 H 1.08996 * 110.41001 * 82.18441 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6240 -2.5576 0.8880 11 8 0.4298 -2.5740 -1.1688 12 6 2.2452 -3.6620 -0.0027 13 7 1.5106 -4.9343 -0.0033 14 6 0.8308 -5.1559 -1.3054 15 6 0.5852 -6.6790 -1.3617 16 1 0.3572 -7.1183 -2.3328 17 6 0.1127 -7.3811 -0.0870 18 6 1.6441 -7.2909 -0.4215 19 6 2.4166 -8.5580 -0.7938 20 8 3.3232 -8.8899 0.2597 21 6 2.4406 -6.0859 0.1237 22 1 -0.4851 0.8400 0.0004 23 1 0.9223 -2.5282 -1.9998 24 1 2.8718 -3.6051 0.8873 25 1 2.8718 -3.6035 -0.8927 26 1 -0.1159 -4.6168 -1.3366 27 1 1.4742 -4.8440 -2.1281 28 1 -0.2813 -6.7559 0.7142 29 1 -0.3601 -8.3571 -0.1968 30 1 1.7162 -9.3799 -0.9425 31 1 2.9754 -8.3859 -1.7137 32 1 3.8474 -9.6850 0.0916 33 1 3.3358 -5.9195 -0.4754 34 1 2.7057 -6.2470 1.1686 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332968388.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:29 Heat of formation + Delta-G solvation = -57.872062 kcal Electronic energy + Delta-G solvation = -16167.262418 eV Core-core repulsion = 13487.350596 eV Total energy + Delta-G solvation = -2679.911822 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.70859 -36.75189 -35.76952 -33.15490 -32.07990 -28.71286 -28.37121 -25.85806 -25.29533 -22.72961 -20.63147 -19.67026 -18.85211 -17.32809 -16.93661 -15.63959 -15.05981 -14.81791 -14.58158 -14.14142 -13.75069 -13.26315 -13.04328 -12.86205 -12.49227 -12.38367 -11.58751 -11.22532 -11.10539 -10.94066 -10.84868 -10.68023 -10.46150 -10.30180 -10.01629 -9.76075 -9.20110 -8.97874 -8.55041 -8.13711 -7.72239 -5.98213 -4.16384 3.28175 3.36327 3.39745 3.61274 4.16257 4.37049 4.58273 4.76959 4.96586 5.09874 5.19982 5.28711 5.34809 5.53640 5.63269 5.93150 5.93590 6.05185 6.15901 6.22525 6.25395 6.35887 6.42865 6.46846 6.72011 6.93318 7.44432 7.55550 7.58819 7.79467 7.97175 8.23370 8.87259 9.40461 9.60637 11.06000 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.056018 B = 0.005906 C = 0.005546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.716518 B = 4739.616914 C = 5047.745225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.080 3.920 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.572 4.572 8 H 0.055 0.945 9 C 0.237 3.763 10 H 0.063 0.937 11 O -0.560 6.560 12 C 0.023 3.977 13 N -0.506 5.506 14 C 0.065 3.935 15 C -0.154 4.154 16 H 0.107 0.893 17 C -0.128 4.128 18 C -0.157 4.157 19 C 0.128 3.872 20 O -0.566 6.566 21 C 0.076 3.924 22 H 0.259 0.741 23 H 0.339 0.661 24 H 0.068 0.932 25 H 0.023 0.977 26 H 0.108 0.892 27 H 0.041 0.959 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.375 0.625 33 H 0.040 0.960 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.669 -15.307 -3.388 16.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.611 4.611 8 H 0.073 0.927 9 C 0.179 3.821 10 H 0.081 0.919 11 O -0.362 6.362 12 C -0.105 4.105 13 N -0.230 5.230 14 C -0.062 4.062 15 C -0.173 4.173 16 H 0.125 0.875 17 C -0.165 4.165 18 C -0.158 4.158 19 C 0.050 3.950 20 O -0.371 6.371 21 C -0.052 4.052 22 H 0.069 0.931 23 H 0.182 0.818 24 H 0.087 0.913 25 H 0.041 0.959 26 H 0.126 0.874 27 H 0.060 0.940 28 H 0.123 0.877 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.221 0.779 33 H 0.058 0.942 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.397 -14.643 -2.210 15.001 hybrid contribution 1.922 0.459 -1.392 2.417 sum 4.319 -14.184 -3.602 15.258 Atomic orbital electron populations 1.70094 1.05898 1.26259 1.47109 1.25022 0.94675 0.99060 0.93854 0.86624 0.80200 0.83914 0.77673 1.19774 1.20933 1.20847 1.21667 0.93151 0.91566 1.54685 0.92724 1.19353 0.88013 0.88506 0.86232 0.91913 1.86596 1.38483 1.95928 1.15204 1.23201 0.97358 0.90267 0.99679 1.65458 1.25064 1.01708 1.30802 1.22796 1.01301 0.91575 0.90564 1.23639 1.02520 0.96036 0.95120 0.87455 1.23514 0.93139 1.00623 0.99176 1.22951 0.90176 0.95749 1.06904 1.21346 0.90709 0.94105 0.88858 1.86549 1.56507 1.49262 1.44748 1.22366 0.93541 0.88522 1.00819 0.93070 0.81784 0.91332 0.95866 0.87389 0.94038 0.87654 0.89035 0.93631 0.93692 0.77898 0.94193 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.58 12.84 55.43 0.71 -24.86 16 2 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 3 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.57 -15.88 8.76 -34.44 -0.30 -16.18 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.24 6.09 3.08 -27.89 -0.09 6.00 16 10 H 0.06 1.82 8.14 -51.93 -0.42 1.40 16 11 O -0.56 -14.13 9.70 -35.23 -0.34 -14.47 16 12 C 0.02 0.49 4.60 -3.82 -0.02 0.48 16 13 N -0.51 -9.80 5.00 -229.97 -1.15 -10.95 16 14 C 0.07 1.15 4.93 -2.18 -0.01 1.14 16 15 C -0.15 -2.22 6.93 -89.24 -0.62 -2.84 16 16 H 0.11 1.31 8.14 -51.93 -0.42 0.88 16 17 C -0.13 -1.79 9.88 -24.56 -0.24 -2.03 16 18 C -0.16 -2.27 2.90 -150.95 -0.44 -2.70 16 19 C 0.13 1.46 7.39 37.16 0.27 1.73 16 20 O -0.57 -6.59 13.36 -35.23 -0.47 -7.06 16 21 C 0.08 1.28 5.86 -2.18 -0.01 1.27 16 22 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 23 H 0.34 7.70 8.90 45.56 0.41 8.10 16 24 H 0.07 1.47 8.13 -51.93 -0.42 1.05 16 25 H 0.02 0.49 7.88 -51.93 -0.41 0.08 16 26 H 0.11 2.13 6.56 -51.93 -0.34 1.79 16 27 H 0.04 0.72 7.79 -51.93 -0.40 0.31 16 28 H 0.11 1.67 8.06 -51.93 -0.42 1.26 16 29 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.05 0.44 8.07 -51.92 -0.42 0.02 16 31 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.37 2.37 9.12 45.56 0.42 2.79 16 33 H 0.04 0.68 8.00 -51.93 -0.42 0.26 16 34 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 280.75 15.07 4.23 4.23 Total: -1.00 -31.63 280.75 -7.25 -38.88 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -3.66 Total: 8.91 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -1.55 Total: -10.98 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: -0.44 Total: -35.81 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.81 Total: -21.53 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.63 -7.25 -38.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332968388.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.989 kcal (2) G-P(sol) polarization free energy of solvation -31.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds