Wall clock time and date at job start Mon Mar 30 2020 03:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.46692 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47025 * 300.00081 * 3 2 1 6 6 H 1.48505 * 109.46672 * 60.00083 * 3 2 1 7 7 C 1.37876 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00339 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.47476 * 300.00008 * 9 7 2 11 11 O 1.42903 * 109.47062 * 59.99689 * 9 7 2 12 12 C 1.52993 * 109.47429 * 179.97438 * 9 7 2 13 13 N 1.46906 * 109.47378 * 179.97438 * 12 9 7 14 14 C 1.48558 * 110.99800 * 69.87584 * 13 12 9 15 15 C 1.54381 * 104.59376 * 159.04098 * 14 13 12 16 16 H 1.08997 * 117.60287 * 197.01238 * 15 14 13 17 17 C 1.53001 * 118.12894 * 41.48971 * 15 14 13 18 18 C 1.54261 * 105.06119 * 336.14561 * 15 14 13 19 19 C 1.53001 * 121.78775 * 222.13087 * 18 15 14 20 20 O 1.42902 * 109.46899 * 180.02562 * 19 18 15 21 21 C 1.48565 * 110.99816 * 185.29519 * 13 12 9 22 22 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 23 23 H 0.96698 * 113.99903 * 60.00438 * 11 9 7 24 24 H 1.09004 * 109.46862 * 60.00067 * 12 9 7 25 25 H 1.09000 * 109.47250 * 300.00090 * 12 9 7 26 26 H 1.08994 * 110.41119 * 277.82056 * 14 13 12 27 27 H 1.09000 * 110.41080 * 40.26343 * 14 13 12 28 28 H 1.08995 * 117.43861 * 15.97756 * 17 15 14 29 29 H 1.09002 * 117.43959 * 160.72706 * 17 15 14 30 30 H 1.09007 * 109.46610 * 299.99963 * 19 18 15 31 31 H 1.08997 * 109.47413 * 59.99886 * 19 18 15 32 32 H 0.96701 * 113.99596 * 179.97438 * 20 19 18 33 33 H 1.08995 * 110.41094 * 319.73458 * 21 13 12 34 34 H 1.08996 * 110.41001 * 82.18441 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6240 -2.5576 0.8880 11 8 0.4298 -2.5740 -1.1688 12 6 2.2452 -3.6620 -0.0027 13 7 1.5106 -4.9343 -0.0033 14 6 0.8308 -5.1559 -1.3054 15 6 0.5852 -6.6790 -1.3617 16 1 0.3572 -7.1183 -2.3328 17 6 0.1127 -7.3811 -0.0870 18 6 1.6441 -7.2909 -0.4215 19 6 2.4166 -8.5580 -0.7938 20 8 3.3232 -8.8899 0.2597 21 6 2.4406 -6.0859 0.1237 22 1 -0.4851 0.8400 0.0004 23 1 0.9223 -2.5282 -1.9998 24 1 2.8718 -3.6051 0.8873 25 1 2.8718 -3.6035 -0.8927 26 1 -0.1159 -4.6168 -1.3366 27 1 1.4742 -4.8440 -2.1281 28 1 -0.2813 -6.7559 0.7142 29 1 -0.3601 -8.3571 -0.1968 30 1 1.7162 -9.3799 -0.9425 31 1 2.9754 -8.3859 -1.7137 32 1 3.8474 -9.6850 0.0916 33 1 3.3358 -5.9195 -0.4754 34 1 2.7057 -6.2470 1.1686 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332968388.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:29 Heat of formation + Delta-G solvation = -84.430737 kcal Electronic energy + Delta-G solvation = -16168.414089 eV Core-core repulsion = 13487.350596 eV Total energy + Delta-G solvation = -2681.063493 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.00327 -38.14091 -37.15309 -34.72138 -34.21080 -30.42655 -29.74828 -27.17023 -26.89862 -24.34852 -22.40734 -21.02338 -20.00629 -19.04203 -18.13955 -16.95831 -16.69817 -16.62443 -16.07563 -15.77092 -15.34817 -14.75006 -14.41131 -14.33433 -13.91310 -13.71297 -13.14662 -13.05237 -12.84033 -12.78540 -12.61674 -12.11743 -11.96353 -11.79736 -11.20793 -11.06378 -10.87444 -10.72426 -10.30230 -10.08257 -9.31528 -8.14397 -6.40891 1.39346 1.40366 1.52827 2.37746 2.53300 3.10627 3.12459 3.27958 3.55050 3.89637 3.95755 4.21006 4.26714 4.32082 4.44340 4.48765 4.53966 4.64896 4.73542 4.85664 4.91830 4.93949 5.01016 5.09407 5.24192 5.31964 5.61437 5.70676 5.97370 6.04078 6.21290 6.71876 6.99247 7.31753 7.52466 8.90427 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.056018 B = 0.005906 C = 0.005546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.716518 B = 4739.616914 C = 5047.745225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.027 3.973 3 Si 0.963 3.037 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.588 4.588 8 H 0.058 0.942 9 C 0.241 3.759 10 H 0.018 0.982 11 O -0.568 6.568 12 C 0.041 3.959 13 N -0.525 5.525 14 C 0.064 3.936 15 C -0.150 4.150 16 H 0.139 0.861 17 C -0.128 4.128 18 C -0.158 4.158 19 C 0.132 3.868 20 O -0.589 6.589 21 C 0.075 3.925 22 H 0.262 0.738 23 H 0.350 0.650 24 H 0.063 0.937 25 H 0.029 0.971 26 H 0.080 0.920 27 H 0.044 0.956 28 H 0.077 0.923 29 H 0.125 0.875 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.398 0.602 33 H 0.042 0.958 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.730 -16.637 -4.393 17.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.176 4.176 3 Si 0.787 3.213 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.205 1.205 7 C -0.626 4.626 8 H 0.076 0.924 9 C 0.183 3.817 10 H 0.036 0.964 11 O -0.371 6.371 12 C -0.087 4.087 13 N -0.249 5.249 14 C -0.063 4.063 15 C -0.168 4.168 16 H 0.157 0.843 17 C -0.165 4.165 18 C -0.159 4.159 19 C 0.054 3.946 20 O -0.398 6.398 21 C -0.053 4.053 22 H 0.071 0.929 23 H 0.194 0.806 24 H 0.082 0.918 25 H 0.047 0.953 26 H 0.098 0.902 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.143 0.857 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.248 0.752 33 H 0.060 0.940 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.479 -16.004 -3.222 16.692 hybrid contribution 1.570 0.838 -1.042 2.062 sum 5.049 -15.166 -4.264 16.543 Atomic orbital electron populations 1.70231 1.07686 1.27354 1.48302 1.25902 0.95489 1.02928 0.93258 0.85468 0.79034 0.79010 0.77780 1.18823 1.20276 1.20463 1.22029 0.93457 0.92704 1.54432 0.92399 1.19090 0.87752 0.89972 0.84902 0.96382 1.86549 1.38872 1.96067 1.15624 1.22796 0.96078 0.90199 0.99661 1.65342 1.25728 1.01545 1.32274 1.22687 0.99733 0.94202 0.89698 1.23604 1.02957 0.93468 0.96771 0.84310 1.23594 0.93211 1.01652 0.98032 1.23064 0.90279 0.96207 1.06306 1.21352 0.91157 0.93100 0.88943 1.86484 1.57075 1.50987 1.45257 1.22337 0.93634 0.88863 1.00418 0.92933 0.80557 0.91812 0.95257 0.90183 0.93758 0.90420 0.85699 0.91035 0.92364 0.75226 0.93991 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.66 12.84 21.45 0.28 -54.39 16 2 C 0.03 1.52 5.40 84.65 0.46 1.98 16 3 Si 0.96 43.93 29.54 68.60 2.03 45.95 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 7 C -0.59 -33.10 8.76 25.60 0.22 -32.88 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 9 C 0.24 12.82 3.08 29.84 0.09 12.91 16 10 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 11 O -0.57 -29.54 9.70 -148.98 -1.44 -30.98 16 12 C 0.04 1.81 4.60 86.30 0.40 2.21 16 13 N -0.52 -20.62 5.00 -881.48 -4.41 -25.02 16 14 C 0.06 2.26 4.93 86.45 0.43 2.68 16 15 C -0.15 -3.99 6.93 -9.90 -0.07 -4.06 16 16 H 0.14 2.86 8.14 -2.39 -0.02 2.84 16 17 C -0.13 -3.34 9.88 32.00 0.32 -3.03 16 18 C -0.16 -4.21 2.90 -49.87 -0.14 -4.35 16 19 C 0.13 2.53 7.39 71.98 0.53 3.06 16 20 O -0.59 -12.03 13.36 -148.98 -1.99 -14.02 16 21 C 0.08 2.51 5.86 86.45 0.51 3.02 16 22 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 23 H 0.35 16.22 8.90 -74.06 -0.66 15.56 16 24 H 0.06 2.81 8.13 -2.38 -0.02 2.79 16 25 H 0.03 1.24 7.88 -2.39 -0.02 1.22 16 26 H 0.08 3.25 6.56 -2.39 -0.02 3.23 16 27 H 0.04 1.51 7.79 -2.39 -0.02 1.49 16 28 H 0.08 2.47 8.06 -2.39 -0.02 2.45 16 29 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.07 1.03 8.07 -2.38 -0.02 1.01 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.40 3.77 9.12 -74.06 -0.68 3.10 16 33 H 0.04 1.38 8.00 -2.39 -0.02 1.36 16 34 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -68.98 280.75 -3.04 -72.01 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: -0.23 Total: 24.91 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: 2.74 Total: -18.46 kcal Atomic # 7 Polarization: -75.28 SS G_CDS: -4.13 Total: -79.41 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -3.43 Total: -45.00 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -68.98 -3.04 -72.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332968388.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.419 kcal (2) G-P(sol) polarization free energy of solvation -68.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds