Wall clock time and date at job start Mon Mar 30 2020 03:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 112.99514 * 2 1 4 4 N 1.46901 * 109.47056 * 50.33366 * 3 2 1 5 5 C 1.47962 * 110.99645 * 169.99960 * 4 3 2 6 6 C 1.53939 * 86.17954 * 222.41370 * 5 4 3 7 7 O 1.42901 * 113.73443 * 269.25769 * 6 5 4 8 8 C 1.50699 * 113.73181 * 138.07765 * 6 5 4 9 9 H 1.07999 * 120.00015 * 4.91121 * 8 6 5 10 10 C 1.37879 * 119.99686 * 184.90847 * 8 6 5 11 11 N 1.31521 * 119.99972 * 13.82310 * 10 8 6 12 12 Si 1.86792 * 119.99875 * 193.81760 * 10 8 6 13 13 H 1.48504 * 109.47216 * 180.02562 * 12 10 8 14 14 H 1.48504 * 109.47601 * 300.00327 * 12 10 8 15 15 H 1.48506 * 109.47155 * 60.00602 * 12 10 8 16 16 C 1.47957 * 111.00157 * 70.63963 * 4 3 2 17 17 C 1.54034 * 113.81677 * 131.82411 * 2 1 3 18 18 O 1.44442 * 85.42381 * 91.81087 * 17 2 1 19 19 C 1.44175 * 93.38274 * 24.08915 * 18 17 2 20 20 H 1.09002 * 109.47097 * 60.00732 * 1 2 3 21 21 H 1.09008 * 109.47033 * 179.97438 * 1 2 3 22 22 H 1.08991 * 109.47335 * 300.00105 * 1 2 3 23 23 H 1.08996 * 109.47057 * 290.32788 * 3 2 1 24 24 H 1.08995 * 109.46388 * 170.33029 * 3 2 1 25 25 H 1.08999 * 113.76019 * 108.09949 * 5 4 3 26 26 H 1.09000 * 113.75802 * 336.73263 * 5 4 3 27 27 H 0.96693 * 113.99776 * 171.47023 * 7 6 5 28 28 H 0.97001 * 119.99982 * 5.87544 * 11 10 8 29 29 H 1.08994 * 113.76072 * 23.25977 * 16 4 3 30 30 H 1.09001 * 113.75391 * 251.89917 * 16 4 3 31 31 H 1.08997 * 113.86479 * 205.92259 * 17 2 1 32 32 H 1.09007 * 113.86271 * 337.62475 * 17 2 1 33 33 H 1.09002 * 113.86395 * 221.76918 * 19 18 17 34 34 H 1.08994 * 113.86509 * 90.05709 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1277 1.4085 0.0000 4 7 1.5052 2.2046 1.0661 5 6 2.2180 3.4874 1.2550 6 6 2.0656 3.2314 2.7653 7 8 0.8739 3.7865 3.3254 8 6 3.2998 3.5628 3.5641 9 1 4.1517 4.0157 3.0788 10 6 3.3412 3.2877 4.9146 11 7 2.4353 2.5013 5.4536 12 14 4.6842 4.0318 5.9784 13 1 4.5079 3.5840 7.3833 14 1 6.0118 3.5895 5.4813 15 1 4.6009 5.5133 5.9165 16 6 1.9456 1.7407 2.4003 17 6 2.1520 -0.9397 1.0501 18 8 2.1471 -1.9296 -0.0018 19 6 2.1521 -0.9397 -1.0501 20 1 -0.3633 0.5137 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.9410 1.8824 -0.9636 24 1 3.2022 1.3470 0.1726 25 1 1.6628 4.3549 0.8984 26 1 3.2514 3.4706 0.9087 27 1 0.7079 3.5198 4.2399 28 1 1.7899 2.0471 4.8896 29 1 2.8993 1.2131 2.3891 30 1 1.1726 1.2127 2.9588 31 1 3.1503 -0.6426 1.3715 32 1 1.4868 -1.1742 1.8812 33 1 1.4869 -1.1742 -1.8811 34 1 3.1503 -0.6427 -1.3714 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473414942.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:49 Heat of formation + Delta-G solvation = -51.824948 kcal Electronic energy + Delta-G solvation = -16715.767489 eV Core-core repulsion = 14036.117889 eV Total energy + Delta-G solvation = -2679.649600 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.99260 -40.56220 -36.67067 -34.28706 -33.65197 -29.65946 -27.94510 -27.63720 -26.96686 -26.35845 -23.68543 -20.70081 -20.12419 -19.55990 -17.46974 -17.15725 -17.03163 -16.72642 -16.24834 -16.01210 -15.60350 -14.90682 -14.74088 -14.30301 -13.88930 -13.49242 -13.25593 -13.08230 -12.91167 -12.90359 -12.57989 -12.45651 -12.15191 -11.95335 -11.51273 -11.25431 -11.05449 -10.72258 -10.65505 -10.17018 -9.60293 -8.67062 -6.46941 1.54565 1.59207 1.80572 2.51825 2.65270 2.89762 2.96790 3.22694 3.63738 3.80956 3.92975 4.07764 4.14259 4.25341 4.30152 4.38950 4.51486 4.55265 4.64992 4.73656 4.85851 4.88533 4.91404 4.94772 5.08082 5.14380 5.19487 5.31734 5.43478 5.81528 6.06869 6.18366 6.46927 7.01588 7.29892 8.64521 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.037913 B = 0.007705 C = 0.007208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.364103 B = 3633.239618 C = 3883.696417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.117 4.117 3 C 0.027 3.973 4 N -0.468 5.468 5 C 0.025 3.975 6 C 0.193 3.807 7 O -0.574 6.574 8 C -0.639 4.639 9 H 0.052 0.948 10 C -0.006 4.006 11 N -0.918 5.918 12 Si 1.107 2.893 13 H -0.282 1.282 14 H -0.271 1.271 15 H -0.276 1.276 16 C -0.001 4.001 17 C 0.038 3.962 18 O -0.402 6.402 19 C 0.049 3.951 20 H 0.072 0.928 21 H 0.059 0.941 22 H 0.051 0.949 23 H 0.092 0.908 24 H 0.038 0.962 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.367 0.633 28 H 0.264 0.736 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.113 0.887 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.182 -4.217 -10.373 11.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.118 4.118 3 C -0.102 4.102 4 N -0.191 5.191 5 C -0.104 4.104 6 C 0.153 3.847 7 O -0.381 6.381 8 C -0.676 4.676 9 H 0.071 0.929 10 C -0.208 4.208 11 N -0.556 5.556 12 Si 0.930 3.070 13 H -0.208 1.208 14 H -0.197 1.197 15 H -0.201 1.201 16 C -0.131 4.131 17 C -0.039 4.039 18 O -0.322 6.322 19 C -0.028 4.028 20 H 0.091 0.909 21 H 0.078 0.922 22 H 0.070 0.930 23 H 0.111 0.889 24 H 0.057 0.943 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.215 0.785 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.131 0.869 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.050 -4.119 -9.635 10.478 hybrid contribution 0.375 -0.284 -0.660 0.811 sum 0.326 -4.403 -10.295 11.202 Atomic orbital electron populations 1.21338 0.91201 1.01433 1.02772 1.23600 0.98436 0.93934 0.95823 1.22725 0.96212 0.93957 0.97308 1.68481 1.45956 1.02802 1.01839 1.23937 0.97344 0.94129 0.94945 1.20398 0.83449 0.89514 0.91324 1.86214 1.45099 1.74985 1.31771 1.22641 1.01491 1.46033 0.97468 0.92934 1.27112 1.01753 0.94096 0.97799 1.70981 1.18566 1.26542 1.39492 0.83056 0.73242 0.76103 0.74646 1.20781 1.19673 1.20117 1.24479 0.97495 0.99703 0.91383 1.24188 1.00264 0.86938 0.92465 1.89645 1.95883 1.28731 1.17903 1.24233 1.01385 0.85132 0.92035 0.90911 0.92154 0.93040 0.88935 0.94340 0.90347 0.90555 0.78503 0.92481 0.92401 0.92496 0.90784 0.89873 0.86921 0.88947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.94 8.83 71.98 0.64 -2.30 16 2 C -0.12 -3.21 1.01 -51.48 -0.05 -3.26 16 3 C 0.03 0.80 4.41 86.30 0.38 1.18 16 4 N -0.47 -17.81 5.40 -910.86 -4.92 -22.73 16 5 C 0.03 1.04 7.36 86.41 0.64 1.68 16 6 C 0.19 9.49 1.08 -10.89 -0.01 9.47 16 7 O -0.57 -29.84 13.45 -148.98 -2.00 -31.84 16 8 C -0.64 -34.08 8.56 25.60 0.22 -33.86 16 9 H 0.05 2.79 7.85 -2.91 -0.02 2.76 16 10 C -0.01 -0.34 5.26 84.65 0.45 0.10 16 11 N -0.92 -51.05 12.80 21.45 0.27 -50.78 16 12 Si 1.11 47.40 29.93 68.60 2.05 49.46 16 13 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 14 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 15 H -0.28 -11.30 7.11 99.48 0.71 -10.60 16 16 C 0.00 -0.04 4.94 86.41 0.43 0.38 16 17 C 0.04 1.16 6.80 72.30 0.49 1.65 16 18 O -0.40 -12.01 12.38 -148.98 -1.84 -13.85 16 19 C 0.05 1.11 8.37 72.30 0.60 1.72 16 20 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 21 H 0.06 1.50 8.09 -2.38 -0.02 1.48 16 22 H 0.05 1.62 7.63 -2.39 -0.02 1.60 16 23 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 24 H 0.04 1.18 7.53 -2.39 -0.02 1.16 16 25 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 26 H 0.08 2.99 7.74 -2.39 -0.02 2.97 16 27 H 0.37 19.13 6.95 -74.06 -0.52 18.61 16 28 H 0.26 14.56 5.52 -92.71 -0.51 14.04 16 29 H 0.06 2.57 6.61 -2.39 -0.02 2.55 16 30 H 0.06 2.58 7.79 -2.39 -0.02 2.56 16 31 H 0.07 2.32 7.26 -2.39 -0.02 2.31 16 32 H 0.08 2.62 8.10 -2.38 -0.02 2.60 16 33 H 0.11 2.03 8.10 -2.39 -0.02 2.01 16 34 H 0.09 1.83 8.10 -2.39 -0.02 1.81 16 Total: -1.00 -59.56 273.61 -1.84 -61.40 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: 0.83 Total: 31.59 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: 3.78 Total: -23.24 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: -4.65 Total: -73.51 kcal Atomic # 8 Polarization: -41.85 SS G_CDS: -3.85 Total: -45.70 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.05 Total: 49.46 kcal Total: -59.56 -1.84 -61.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473414942.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.575 kcal (2) G-P(sol) polarization free energy of solvation -59.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds