Wall clock time and date at job start Mon Mar 30 2020 03:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47228 * 2 1 4 4 O 1.45201 * 109.47226 * 120.00248 * 2 1 3 5 5 C 1.34640 * 116.99944 * 89.99982 * 4 2 1 6 6 O 1.21510 * 119.99911 * 359.97438 * 5 4 2 7 7 N 1.34769 * 119.99757 * 179.97438 * 5 4 2 8 8 C 1.46499 * 120.00220 * 185.07874 * 7 5 4 9 9 C 1.50697 * 109.47549 * 270.00516 * 8 7 5 10 10 H 1.08003 * 119.99605 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00387 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00114 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99897 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47229 * 60.00167 * 13 11 9 15 15 H 1.48503 * 109.47057 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47173 * 299.99896 * 13 11 9 17 17 C 1.46508 * 120.00042 * 5.08097 * 7 5 4 18 18 C 1.53000 * 117.49461 * 183.01258 * 17 7 5 19 19 C 1.52999 * 60.00076 * 252.51150 * 18 17 7 20 20 H 1.09006 * 109.47348 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47503 * 299.99908 * 1 2 3 22 22 H 1.09007 * 109.47574 * 59.99994 * 1 2 3 23 23 H 1.09005 * 109.46952 * 240.00516 * 2 1 3 24 24 H 1.08993 * 109.47136 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.46760 * 300.00106 * 3 2 1 26 26 H 1.08994 * 109.47121 * 60.00286 * 3 2 1 27 27 H 1.09000 * 109.46863 * 30.00319 * 8 7 5 28 28 H 1.08994 * 109.47363 * 149.99778 * 8 7 5 29 29 H 0.96988 * 120.00379 * 180.02562 * 12 11 9 30 30 H 1.08997 * 115.54833 * 328.72147 * 17 7 5 31 31 H 1.08998 * 117.50143 * 359.97438 * 18 17 7 32 32 H 1.09003 * 117.49739 * 145.02717 * 18 17 7 33 33 H 1.08999 * 117.50476 * 252.51534 * 19 18 17 34 34 H 1.09004 * 117.52212 * 107.48087 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2177 -2.0116 1.0847 6 8 1.9967 -2.5822 0.0349 7 7 2.6669 -2.7070 2.1482 8 6 2.9946 -4.1281 2.0088 9 6 1.7707 -4.9570 2.3019 10 1 0.8417 -4.4736 2.5660 11 6 1.8368 -6.3325 2.2329 12 7 2.9678 -6.9211 1.9108 13 14 0.3198 -7.3599 2.5968 14 1 -0.7599 -7.0043 1.6413 15 1 0.6516 -8.8003 2.4543 16 1 -0.1385 -7.0919 3.9837 17 6 2.8274 -2.0419 3.4437 18 6 3.4077 -2.8669 4.5941 19 6 1.9225 -2.4994 4.5895 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8901 24 1 3.1299 1.4425 -0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.3316 -4.3251 0.9911 28 1 3.7866 -4.3889 2.7107 29 1 3.0143 -7.8886 1.8618 30 1 3.0888 -0.9847 3.4001 31 1 3.6696 -3.9046 4.3873 32 1 4.0512 -2.3524 5.3078 33 1 1.5889 -1.7430 5.2999 34 1 1.2074 -3.2948 4.3793 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044240098.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:30 Heat of formation + Delta-G solvation = -58.844914 kcal Electronic energy + Delta-G solvation = -16363.506647 eV Core-core repulsion = 13683.552639 eV Total energy + Delta-G solvation = -2679.954008 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.83132 -37.53580 -35.86154 -33.17823 -32.87632 -31.80616 -27.44897 -27.15998 -23.51205 -22.24521 -21.76528 -20.90076 -19.36244 -17.51238 -16.55552 -16.22198 -15.36344 -14.81663 -14.44940 -14.27214 -13.82883 -13.32851 -13.01485 -12.43822 -12.22788 -11.99939 -11.81261 -11.54434 -11.34311 -11.07219 -10.90461 -10.68499 -10.50159 -10.39377 -10.15408 -10.03433 -10.00541 -9.49347 -9.43708 -8.43485 -7.59134 -6.05680 -4.09916 2.92172 3.32121 3.36281 3.40069 3.62756 4.38443 4.48642 4.54137 4.98517 5.11138 5.28306 5.34249 5.42720 5.50788 5.58743 5.61200 5.73163 5.80961 5.92512 6.14278 6.16054 6.24423 6.34649 6.65309 6.77919 6.88538 7.16010 7.42108 7.49167 7.90645 8.19307 8.39077 8.89390 9.21048 9.55107 11.02312 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.027583 B = 0.008383 C = 0.007397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.883800 B = 3339.291037 C = 3784.442901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.097 3.903 3 C -0.147 4.147 4 O -0.374 6.374 5 C 0.643 3.357 6 O -0.568 6.568 7 N -0.552 5.552 8 C 0.257 3.743 9 C -0.524 4.524 10 H 0.058 0.942 11 C 0.063 3.937 12 N -0.895 5.895 13 Si 0.897 3.103 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 C 0.077 3.923 18 C -0.181 4.181 19 C -0.192 4.192 20 H 0.065 0.935 21 H 0.061 0.939 22 H 0.068 0.932 23 H 0.084 0.916 24 H 0.062 0.938 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.264 0.736 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.019 13.453 1.658 13.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.041 3.959 3 C -0.204 4.204 4 O -0.289 6.289 5 C 0.397 3.603 6 O -0.457 6.457 7 N -0.290 5.290 8 C 0.139 3.861 9 C -0.563 4.563 10 H 0.077 0.923 11 C -0.140 4.140 12 N -0.534 5.534 13 Si 0.725 3.275 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.202 1.202 17 C -0.028 4.028 18 C -0.219 4.219 19 C -0.231 4.231 20 H 0.084 0.916 21 H 0.080 0.920 22 H 0.087 0.913 23 H 0.102 0.898 24 H 0.081 0.919 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.006 13.121 1.239 13.218 hybrid contribution -0.909 -0.720 0.154 1.170 sum -1.915 12.401 1.393 12.625 Atomic orbital electron populations 1.22197 0.94965 1.03312 1.02126 1.22467 0.94106 0.92059 0.87256 1.21867 1.01912 0.94020 1.02580 1.86287 1.80210 1.21561 1.40877 1.18058 0.77728 0.80156 0.84390 1.90947 1.56583 1.69513 1.28627 1.46726 1.65237 1.11575 1.05426 1.19420 0.96534 0.71192 0.98909 1.21390 0.96657 0.91071 1.47204 0.92333 1.24907 0.96265 0.97677 0.95107 1.69909 1.25224 1.10151 1.48128 0.86566 0.83144 0.78979 0.78809 1.20209 1.21158 1.20177 1.21503 1.05082 0.95717 0.80507 1.23302 0.96448 1.02511 0.99604 1.23398 0.94404 1.04043 1.01219 0.91592 0.92016 0.91326 0.89843 0.91913 0.90758 0.91737 0.93741 0.93731 0.92600 0.86415 0.86785 0.89042 0.89489 0.87386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 9.55 37.16 0.35 -1.98 16 2 C 0.10 1.49 3.19 -26.73 -0.09 1.40 16 3 C -0.15 -1.62 9.57 37.16 0.36 -1.26 16 4 O -0.37 -7.04 8.89 -40.33 -0.36 -7.40 16 5 C 0.64 14.78 8.36 54.05 0.45 15.24 16 6 O -0.57 -14.93 15.23 -19.28 -0.29 -15.23 16 7 N -0.55 -12.59 2.79 -173.23 -0.48 -13.07 16 8 C 0.26 6.76 4.67 -5.20 -0.02 6.74 16 9 C -0.52 -14.79 8.69 -34.44 -0.30 -15.09 16 10 H 0.06 1.67 7.21 -52.48 -0.38 1.29 16 11 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 12 N -0.90 -26.34 13.29 55.43 0.74 -25.60 16 13 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 C 0.08 1.43 6.17 -67.93 -0.42 1.01 16 18 C -0.18 -3.07 9.74 -26.73 -0.26 -3.34 16 19 C -0.19 -3.32 10.27 -26.73 -0.27 -3.60 16 20 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 21 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.08 1.39 7.16 -51.93 -0.37 1.02 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.04 1.32 7.50 -51.93 -0.39 0.93 16 28 H 0.04 1.16 5.98 -51.93 -0.31 0.85 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.12 1.90 7.70 -51.93 -0.40 1.50 16 31 H 0.11 2.25 6.11 -51.93 -0.32 1.93 16 32 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.11 2.19 6.93 -51.93 -0.36 1.83 16 LS Contribution 288.75 15.07 4.35 4.35 Total: -1.00 -31.74 288.75 -6.41 -38.15 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -5.04 Total: 1.12 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -0.30 Total: 0.80 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.25 Total: -38.68 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.65 Total: -22.63 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.74 -6.41 -38.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044240098.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.691 kcal (2) G-P(sol) polarization free energy of solvation -31.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds