Wall clock time and date at job start Mon Mar 30 2020 03:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47228 * 2 1 4 4 O 1.45201 * 109.47226 * 120.00248 * 2 1 3 5 5 C 1.34640 * 116.99944 * 89.99982 * 4 2 1 6 6 O 1.21510 * 119.99911 * 359.97438 * 5 4 2 7 7 N 1.34769 * 119.99757 * 179.97438 * 5 4 2 8 8 C 1.46499 * 120.00220 * 185.07874 * 7 5 4 9 9 C 1.50697 * 109.47549 * 270.00516 * 8 7 5 10 10 H 1.08003 * 119.99605 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00387 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00114 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99897 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47229 * 60.00167 * 13 11 9 15 15 H 1.48503 * 109.47057 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47173 * 299.99896 * 13 11 9 17 17 C 1.46508 * 120.00042 * 5.08097 * 7 5 4 18 18 C 1.53000 * 117.49461 * 183.01258 * 17 7 5 19 19 C 1.52999 * 60.00076 * 252.51150 * 18 17 7 20 20 H 1.09006 * 109.47348 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47503 * 299.99908 * 1 2 3 22 22 H 1.09007 * 109.47574 * 59.99994 * 1 2 3 23 23 H 1.09005 * 109.46952 * 240.00516 * 2 1 3 24 24 H 1.08993 * 109.47136 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.46760 * 300.00106 * 3 2 1 26 26 H 1.08994 * 109.47121 * 60.00286 * 3 2 1 27 27 H 1.09000 * 109.46863 * 30.00319 * 8 7 5 28 28 H 1.08994 * 109.47363 * 149.99778 * 8 7 5 29 29 H 0.96988 * 120.00379 * 180.02562 * 12 11 9 30 30 H 1.08997 * 115.54833 * 328.72147 * 17 7 5 31 31 H 1.08998 * 117.50143 * 359.97438 * 18 17 7 32 32 H 1.09003 * 117.49739 * 145.02717 * 18 17 7 33 33 H 1.08999 * 117.50476 * 252.51534 * 19 18 17 34 34 H 1.09004 * 117.52212 * 107.48087 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2177 -2.0116 1.0847 6 8 1.9967 -2.5822 0.0349 7 7 2.6669 -2.7070 2.1482 8 6 2.9946 -4.1281 2.0088 9 6 1.7707 -4.9570 2.3019 10 1 0.8417 -4.4736 2.5660 11 6 1.8368 -6.3325 2.2329 12 7 2.9678 -6.9211 1.9108 13 14 0.3198 -7.3599 2.5968 14 1 -0.7599 -7.0043 1.6413 15 1 0.6516 -8.8003 2.4543 16 1 -0.1385 -7.0919 3.9837 17 6 2.8274 -2.0419 3.4437 18 6 3.4077 -2.8669 4.5941 19 6 1.9225 -2.4994 4.5895 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8901 24 1 3.1299 1.4425 -0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.3316 -4.3251 0.9911 28 1 3.7866 -4.3889 2.7107 29 1 3.0143 -7.8886 1.8618 30 1 3.0888 -0.9847 3.4001 31 1 3.6696 -3.9046 4.3873 32 1 4.0512 -2.3524 5.3078 33 1 1.5889 -1.7430 5.2999 34 1 1.2074 -3.2948 4.3793 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044240098.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:30 Heat of formation + Delta-G solvation = -78.785499 kcal Electronic energy + Delta-G solvation = -16364.371336 eV Core-core repulsion = 13683.552639 eV Total energy + Delta-G solvation = -2680.818697 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.51925 -39.07563 -37.51001 -35.20707 -34.31528 -33.52197 -29.52487 -28.16265 -25.51147 -23.83885 -23.15693 -22.29763 -20.97023 -19.16354 -18.70536 -17.87405 -17.08718 -16.66784 -15.93406 -15.76810 -15.32755 -14.81286 -14.56174 -14.03465 -13.61690 -13.46248 -13.18147 -13.10591 -12.95837 -12.71036 -12.65146 -12.27114 -12.15405 -12.00154 -11.83892 -11.71967 -11.51645 -11.40240 -11.09358 -10.63651 -9.39317 -8.23893 -6.37168 1.29232 1.36118 1.39353 1.47329 1.85138 2.36812 2.97921 3.04462 3.08445 3.88416 3.96420 4.01374 4.13423 4.19282 4.21798 4.51210 4.71371 4.80804 4.81098 4.87989 4.94563 5.03456 5.11603 5.16152 5.23263 5.26999 5.44380 5.49840 5.56896 5.75723 6.01252 6.59421 6.69220 7.27011 7.47112 8.83288 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.027583 B = 0.008383 C = 0.007397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.883800 B = 3339.291037 C = 3784.442901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.082 3.918 3 C -0.136 4.136 4 O -0.363 6.363 5 C 0.641 3.359 6 O -0.613 6.613 7 N -0.560 5.560 8 C 0.274 3.726 9 C -0.537 4.537 10 H 0.050 0.950 11 C 0.013 3.987 12 N -0.925 5.925 13 Si 0.963 3.037 14 H -0.280 1.280 15 H -0.276 1.276 16 H -0.261 1.261 17 C 0.059 3.941 18 C -0.170 4.170 19 C -0.184 4.184 20 H 0.028 0.972 21 H 0.076 0.924 22 H 0.101 0.899 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.104 0.896 26 H 0.078 0.922 27 H 0.000 1.000 28 H 0.044 0.956 29 H 0.268 0.732 30 H 0.149 0.851 31 H 0.080 0.920 32 H 0.135 0.865 33 H 0.128 0.872 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.800 15.390 3.031 15.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.026 3.974 3 C -0.192 4.192 4 O -0.278 6.278 5 C 0.396 3.604 6 O -0.506 6.506 7 N -0.297 5.297 8 C 0.155 3.845 9 C -0.575 4.575 10 H 0.068 0.932 11 C -0.186 4.186 12 N -0.565 5.565 13 Si 0.787 3.213 14 H -0.206 1.206 15 H -0.201 1.201 16 H -0.185 1.185 17 C -0.045 4.045 18 C -0.207 4.207 19 C -0.223 4.223 20 H 0.047 0.953 21 H 0.095 0.905 22 H 0.120 0.880 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.123 0.877 26 H 0.097 0.903 27 H 0.019 0.981 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.166 0.834 31 H 0.098 0.902 32 H 0.153 0.847 33 H 0.146 0.854 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.786 15.104 2.646 15.438 hybrid contribution -0.654 -1.242 -0.310 1.437 sum -2.440 13.862 2.336 14.268 Atomic orbital electron populations 1.22191 0.93771 1.01602 1.04534 1.22993 0.95305 0.93876 0.85184 1.21872 1.01947 0.90698 1.04732 1.86291 1.79940 1.18915 1.42608 1.18179 0.77147 0.81388 0.83703 1.90905 1.58433 1.70826 1.30399 1.46639 1.65039 1.10608 1.07393 1.18918 0.95970 0.73547 0.96104 1.21559 0.96779 0.91780 1.47400 0.93206 1.25759 0.99333 0.98835 0.94721 1.70016 1.27162 1.10627 1.48701 0.85544 0.79076 0.77552 0.79132 1.20595 1.20076 1.18526 1.21947 1.06811 0.96991 0.78735 1.23318 0.97065 1.00854 0.99469 1.23391 0.93821 1.03876 1.01166 0.95272 0.90477 0.88046 0.92026 0.91896 0.87740 0.90348 0.98150 0.93805 0.92266 0.83393 0.90176 0.84692 0.85389 0.90848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.32 9.55 71.98 0.69 -3.63 16 2 C 0.08 2.42 3.19 30.59 0.10 2.52 16 3 C -0.14 -2.58 9.57 71.98 0.69 -1.89 16 4 O -0.36 -13.48 8.89 -55.50 -0.49 -13.97 16 5 C 0.64 30.29 8.36 129.79 1.08 31.38 16 6 O -0.61 -33.91 15.23 19.81 0.30 -33.61 16 7 N -0.56 -26.11 2.79 -932.40 -2.60 -28.70 16 8 C 0.27 15.10 4.67 85.63 0.40 15.50 16 9 C -0.54 -31.27 8.69 25.60 0.22 -31.04 16 10 H 0.05 2.93 7.21 -2.91 -0.02 2.91 16 11 C 0.01 0.74 5.46 84.65 0.46 1.21 16 12 N -0.93 -55.77 13.29 21.45 0.28 -55.49 16 13 Si 0.96 45.35 29.54 68.60 2.03 47.38 16 14 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 15 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 16 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 17 C 0.06 2.09 6.17 44.99 0.28 2.37 16 18 C -0.17 -5.48 9.74 30.59 0.30 -5.18 16 19 C -0.18 -6.04 10.27 30.59 0.31 -5.72 16 20 H 0.03 0.96 8.14 -2.38 -0.02 0.95 16 21 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 22 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 23 H 0.06 2.10 7.16 -2.38 -0.02 2.08 16 24 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.00 0.03 7.50 -2.39 -0.02 0.01 16 28 H 0.04 2.40 5.98 -2.39 -0.01 2.39 16 29 H 0.27 15.19 8.31 -92.72 -0.77 14.41 16 30 H 0.15 4.34 7.70 -2.39 -0.02 4.33 16 31 H 0.08 3.18 6.11 -2.39 -0.01 3.17 16 32 H 0.14 3.17 8.14 -2.39 -0.02 3.15 16 33 H 0.13 3.14 8.14 -2.39 -0.02 3.12 16 34 H 0.07 2.96 6.93 -2.38 -0.02 2.94 16 Total: -1.00 -72.21 288.75 5.13 -67.08 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 1.08 Total: 11.82 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 4.53 Total: 5.50 kcal Atomic # 7 Polarization: -81.88 SS G_CDS: -2.31 Total: -84.19 kcal Atomic # 8 Polarization: -47.39 SS G_CDS: -0.19 Total: -47.58 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -72.21 5.13 -67.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044240098.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.709 kcal (2) G-P(sol) polarization free energy of solvation -72.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds