Wall clock time and date at job start Mon Mar 30 2020 03:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46692 * 2 1 4 4 N 1.46499 * 109.46901 * 179.97438 * 3 2 1 5 5 C 1.37105 * 119.99959 * 85.93614 * 4 3 2 6 6 H 1.08000 * 119.99751 * 212.80499 * 5 4 3 7 7 C 1.38946 * 120.00252 * 32.80703 * 5 4 3 8 8 N 1.31409 * 120.00001 * 32.66381 * 7 5 4 9 9 Si 1.86796 * 120.00080 * 212.66597 * 7 5 4 10 10 H 1.48506 * 109.47193 * 269.99820 * 9 7 5 11 11 H 1.48504 * 109.47404 * 149.99978 * 9 7 5 12 12 H 1.48497 * 109.47376 * 29.99884 * 9 7 5 13 13 C 1.34772 * 120.00067 * 265.93284 * 4 3 2 14 14 O 1.21295 * 120.00148 * 184.88465 * 13 4 3 15 15 C 1.50704 * 119.99920 * 4.88866 * 13 4 3 16 16 H 1.08997 * 110.45747 * 46.93819 * 15 13 4 17 17 C 1.54511 * 110.50964 * 169.53908 * 15 13 4 18 18 C 1.54475 * 104.05934 * 118.64524 * 17 15 13 19 19 O 1.44419 * 104.80792 * 23.97593 * 18 17 15 20 20 C 1.44424 * 105.27555 * 319.49001 * 19 18 17 21 21 H 1.08991 * 109.47247 * 60.00625 * 1 2 3 22 22 H 1.09007 * 109.46899 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47143 * 299.99804 * 1 2 3 24 24 H 1.08999 * 109.47386 * 239.99474 * 2 1 3 25 25 H 1.09005 * 109.47173 * 119.99513 * 2 1 3 26 26 H 1.08999 * 109.47634 * 59.99626 * 3 2 1 27 27 H 1.09005 * 109.46914 * 299.99671 * 3 2 1 28 28 H 0.97005 * 120.00304 * 6.17723 * 8 7 5 29 29 H 1.09000 * 110.50997 * 237.29000 * 17 15 13 30 30 H 1.08995 * 110.51153 * 359.86690 * 17 15 13 31 31 H 1.09001 * 110.37313 * 142.81286 * 18 17 15 32 32 H 1.09002 * 110.37673 * 265.03347 * 18 17 15 33 33 H 1.08996 * 110.37259 * 281.68072 * 20 19 18 34 34 H 1.09001 * 110.37722 * 159.33976 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1910 1.3583 -1.1835 6 1 5.1418 0.8476 -1.2214 7 6 3.6629 1.9299 -2.3346 8 7 2.9376 3.0226 -2.2523 9 14 3.9841 1.1452 -3.9990 10 1 5.2245 1.7149 -4.5839 11 1 2.8391 1.4185 -4.9044 12 1 4.1439 -0.3217 -3.8321 13 6 4.1783 1.5256 1.1651 14 8 5.3880 1.6150 1.1612 15 6 3.4284 1.5072 2.4722 16 1 2.6912 0.7043 2.4772 17 6 4.4083 1.3498 3.6564 18 6 4.2051 2.6375 4.4852 19 8 2.8748 3.0873 4.1481 20 6 2.7491 2.8713 2.7256 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 1.6766 1.9564 0.8899 27 1 1.6766 1.9563 -0.8901 28 1 2.8448 3.4804 -1.4021 29 1 4.1540 0.4705 4.2482 30 1 5.4349 1.2830 3.2963 31 1 4.2726 2.4175 5.5507 32 1 4.9436 3.3890 4.2062 33 1 3.2632 3.6592 2.1753 34 1 1.6982 2.8308 2.4393 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045092363.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:18 Heat of formation + Delta-G solvation = -86.371615 kcal Electronic energy + Delta-G solvation = -16770.494072 eV Core-core repulsion = 14089.346416 eV Total energy + Delta-G solvation = -2681.147655 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.76958 -37.82494 -35.53062 -32.98113 -31.70208 -31.11696 -28.96786 -25.90005 -24.56302 -22.91860 -21.72537 -20.85328 -18.81963 -17.47176 -16.82612 -15.98649 -15.08047 -14.93924 -14.53517 -14.08947 -13.85055 -13.62429 -13.39822 -12.80956 -12.29773 -12.13904 -11.70829 -11.49007 -11.19468 -10.99787 -10.94855 -10.85524 -10.70008 -10.39361 -10.24359 -10.15598 -9.93030 -9.56834 -8.94474 -8.41983 -7.76564 -6.67339 -3.95812 3.27279 3.33841 3.52321 3.72603 4.08667 4.27286 4.63591 4.92356 4.94852 5.19314 5.29412 5.44933 5.46804 5.55897 5.57779 5.72525 5.82104 5.88275 5.99127 6.06388 6.12733 6.23317 6.26752 6.34638 6.43775 6.45011 6.75399 6.88526 6.99197 7.88970 8.08582 8.60391 8.91354 9.36436 9.85332 10.55244 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.029507 B = 0.009430 C = 0.008168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.709331 B = 2968.380977 C = 3427.379412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C 0.086 3.914 4 N -0.444 5.444 5 C -0.403 4.403 6 H 0.084 0.916 7 C 0.014 3.986 8 N -0.864 5.864 9 Si 1.066 2.934 10 H -0.285 1.285 11 H -0.279 1.279 12 H -0.283 1.283 13 C 0.455 3.545 14 O -0.576 6.576 15 C -0.138 4.138 16 H 0.091 0.909 17 C -0.144 4.144 18 C 0.047 3.953 19 O -0.380 6.380 20 C 0.060 3.940 21 H 0.055 0.945 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.094 0.906 28 H 0.275 0.725 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.568 -3.391 6.924 8.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C -0.038 4.038 4 N -0.163 5.163 5 C -0.530 4.530 6 H 0.102 0.898 7 C -0.194 4.194 8 N -0.497 5.497 9 Si 0.892 3.108 10 H -0.211 1.211 11 H -0.205 1.205 12 H -0.209 1.209 13 C 0.244 3.756 14 O -0.459 6.459 15 C -0.160 4.160 16 H 0.109 0.891 17 C -0.182 4.182 18 C -0.030 4.030 19 O -0.299 6.299 20 C -0.017 4.017 21 H 0.074 0.926 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.089 0.911 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.112 0.888 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.117 0.883 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.505 -3.134 5.426 7.717 hybrid contribution 0.433 -0.228 1.476 1.555 sum -4.072 -3.362 6.902 8.690 Atomic orbital electron populations 1.21712 0.96155 1.01045 1.01596 1.21837 0.94871 0.98353 1.02185 1.21809 0.82706 0.96337 1.02950 1.43610 1.04150 1.63204 1.05324 1.20185 1.08467 1.38719 0.85622 0.89805 1.26301 0.96010 0.93946 1.03191 1.70735 1.38288 1.11722 1.28979 0.83582 0.76895 0.75944 0.74386 1.21109 1.20454 1.20883 1.20004 0.88137 0.82709 0.84794 1.90491 1.14345 1.54435 1.86658 1.22594 0.98685 0.99235 0.95509 0.89077 1.22889 1.02244 0.97908 0.95171 1.23396 0.84814 0.95191 0.99554 1.89050 1.32289 1.85413 1.23164 1.23398 1.01008 0.95208 0.82051 0.92551 0.93130 0.93192 0.91146 0.93011 0.92517 0.88792 0.91417 0.91184 0.88282 0.89452 0.92253 0.91821 0.88763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 37.16 0.37 -1.74 16 2 C -0.13 -2.39 6.18 -26.73 -0.17 -2.56 16 3 C 0.09 1.78 4.39 -4.04 -0.02 1.77 16 4 N -0.44 -10.97 2.37 -114.81 -0.27 -11.24 16 5 C -0.40 -11.13 8.80 -14.93 -0.13 -11.27 16 6 H 0.08 2.49 7.82 -52.49 -0.41 2.08 16 7 C 0.01 0.36 4.73 -17.47 -0.08 0.28 16 8 N -0.86 -23.60 12.15 55.50 0.67 -22.92 16 9 Si 1.07 23.47 30.02 -169.99 -5.10 18.37 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 12 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 13 C 0.46 10.99 6.79 -10.99 -0.07 10.92 16 14 O -0.58 -16.03 15.19 5.54 0.08 -15.95 16 15 C -0.14 -2.59 2.56 -90.20 -0.23 -2.82 16 16 H 0.09 1.57 6.84 -51.93 -0.36 1.22 16 17 C -0.14 -2.42 6.66 -25.16 -0.17 -2.59 16 18 C 0.05 0.72 7.63 37.93 0.29 1.01 16 19 O -0.38 -6.51 11.65 -35.23 -0.41 -6.92 16 20 C 0.06 1.06 6.28 37.93 0.24 1.30 16 21 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 22 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 25 H 0.05 0.89 7.26 -51.93 -0.38 0.51 16 26 H 0.06 1.04 4.55 -51.93 -0.24 0.80 16 27 H 0.09 2.15 5.46 -51.93 -0.28 1.87 16 28 H 0.28 7.61 7.57 -40.82 -0.31 7.30 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.10 1.87 6.56 -51.93 -0.34 1.53 16 31 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 1.23 7.86 -51.93 -0.41 0.82 16 34 H 0.09 1.48 6.68 -51.93 -0.35 1.13 16 LS Contribution 274.24 15.07 4.13 4.13 Total: -1.00 -30.80 274.24 -5.69 -36.49 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -4.82 Total: 3.75 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 0.03 Total: -5.70 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: 0.40 Total: -34.17 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.33 Total: -22.87 kcal Atomic # 14 Polarization: 23.47 SS G_CDS: -5.10 Total: 18.37 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.80 -5.69 -36.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045092363.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.885 kcal (2) G-P(sol) polarization free energy of solvation -30.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds