Wall clock time and date at job start Mon Mar 30 2020 03:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46692 * 2 1 4 4 N 1.46499 * 109.46901 * 179.97438 * 3 2 1 5 5 C 1.37105 * 119.99959 * 85.93614 * 4 3 2 6 6 H 1.08000 * 119.99751 * 212.80499 * 5 4 3 7 7 C 1.38946 * 120.00252 * 32.80703 * 5 4 3 8 8 N 1.31409 * 120.00001 * 32.66381 * 7 5 4 9 9 Si 1.86796 * 120.00080 * 212.66597 * 7 5 4 10 10 H 1.48506 * 109.47193 * 269.99820 * 9 7 5 11 11 H 1.48504 * 109.47404 * 149.99978 * 9 7 5 12 12 H 1.48497 * 109.47376 * 29.99884 * 9 7 5 13 13 C 1.34772 * 120.00067 * 265.93284 * 4 3 2 14 14 O 1.21295 * 120.00148 * 184.88465 * 13 4 3 15 15 C 1.50704 * 119.99920 * 4.88866 * 13 4 3 16 16 H 1.08997 * 110.45747 * 46.93819 * 15 13 4 17 17 C 1.54511 * 110.50964 * 169.53908 * 15 13 4 18 18 C 1.54475 * 104.05934 * 118.64524 * 17 15 13 19 19 O 1.44419 * 104.80792 * 23.97593 * 18 17 15 20 20 C 1.44424 * 105.27555 * 319.49001 * 19 18 17 21 21 H 1.08991 * 109.47247 * 60.00625 * 1 2 3 22 22 H 1.09007 * 109.46899 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47143 * 299.99804 * 1 2 3 24 24 H 1.08999 * 109.47386 * 239.99474 * 2 1 3 25 25 H 1.09005 * 109.47173 * 119.99513 * 2 1 3 26 26 H 1.08999 * 109.47634 * 59.99626 * 3 2 1 27 27 H 1.09005 * 109.46914 * 299.99671 * 3 2 1 28 28 H 0.97005 * 120.00304 * 6.17723 * 8 7 5 29 29 H 1.09000 * 110.50997 * 237.29000 * 17 15 13 30 30 H 1.08995 * 110.51153 * 359.86690 * 17 15 13 31 31 H 1.09001 * 110.37313 * 142.81286 * 18 17 15 32 32 H 1.09002 * 110.37673 * 265.03347 * 18 17 15 33 33 H 1.08996 * 110.37259 * 281.68072 * 20 19 18 34 34 H 1.09001 * 110.37722 * 159.33976 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1910 1.3583 -1.1835 6 1 5.1418 0.8476 -1.2214 7 6 3.6629 1.9299 -2.3346 8 7 2.9376 3.0226 -2.2523 9 14 3.9841 1.1452 -3.9990 10 1 5.2245 1.7149 -4.5839 11 1 2.8391 1.4185 -4.9044 12 1 4.1439 -0.3217 -3.8321 13 6 4.1783 1.5256 1.1651 14 8 5.3880 1.6150 1.1612 15 6 3.4284 1.5072 2.4722 16 1 2.6912 0.7043 2.4772 17 6 4.4083 1.3498 3.6564 18 6 4.2051 2.6375 4.4852 19 8 2.8748 3.0873 4.1481 20 6 2.7491 2.8713 2.7256 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 1.6766 1.9564 0.8899 27 1 1.6766 1.9563 -0.8901 28 1 2.8448 3.4804 -1.4021 29 1 4.1540 0.4705 4.2482 30 1 5.4349 1.2830 3.2963 31 1 4.2726 2.4175 5.5507 32 1 4.9436 3.3890 4.2062 33 1 3.2632 3.6592 2.1753 34 1 1.6982 2.8308 2.4393 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045092363.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:18 Heat of formation + Delta-G solvation = -106.658268 kcal Electronic energy + Delta-G solvation = -16771.373767 eV Core-core repulsion = 14089.346416 eV Total energy + Delta-G solvation = -2682.027351 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.40596 -39.43737 -37.40709 -34.70906 -33.25333 -32.84838 -30.37157 -27.55869 -26.39676 -24.36272 -23.22129 -22.35788 -20.58832 -19.37500 -18.46139 -17.46781 -16.70274 -16.52601 -16.15792 -15.73365 -15.50946 -15.32247 -14.98168 -14.18266 -13.91522 -13.80232 -13.26000 -12.97803 -12.77193 -12.60197 -12.43131 -12.23913 -12.17033 -12.00734 -11.93166 -11.76368 -11.53783 -10.94635 -10.88509 -10.38541 -9.76631 -8.79807 -6.10094 1.46767 1.52492 1.79804 1.89347 2.34959 2.71052 2.90703 3.06198 3.51174 3.76947 3.80711 3.99017 4.09492 4.17493 4.23618 4.31904 4.42427 4.56928 4.67434 4.70480 4.76497 4.81978 4.97062 5.02431 5.05301 5.17574 5.28588 5.45522 5.64573 5.79147 5.88644 6.59332 6.90475 7.36858 7.88713 8.40876 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.029507 B = 0.009430 C = 0.008168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.709331 B = 2968.380977 C = 3427.379412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.128 4.128 3 C 0.087 3.913 4 N -0.456 5.456 5 C -0.430 4.430 6 H 0.050 0.950 7 C -0.016 4.016 8 N -0.872 5.872 9 Si 1.112 2.888 10 H -0.279 1.279 11 H -0.267 1.267 12 H -0.272 1.272 13 C 0.445 3.555 14 O -0.625 6.625 15 C -0.132 4.132 16 H 0.115 0.885 17 C -0.143 4.143 18 C 0.047 3.953 19 O -0.380 6.380 20 C 0.066 3.934 21 H 0.050 0.950 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.046 0.954 25 H 0.061 0.939 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.264 0.736 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.126 0.874 32 H 0.050 0.950 33 H 0.038 0.962 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.371 -4.186 7.950 11.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C -0.036 4.036 4 N -0.174 5.174 5 C -0.558 4.558 6 H 0.068 0.932 7 C -0.220 4.220 8 N -0.505 5.505 9 Si 0.932 3.068 10 H -0.205 1.205 11 H -0.191 1.191 12 H -0.197 1.197 13 C 0.235 3.765 14 O -0.512 6.512 15 C -0.154 4.154 16 H 0.133 0.867 17 C -0.181 4.181 18 C -0.029 4.029 19 O -0.299 6.299 20 C -0.011 4.011 21 H 0.069 0.931 22 H 0.091 0.909 23 H 0.088 0.912 24 H 0.065 0.935 25 H 0.079 0.921 26 H 0.100 0.900 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.120 0.880 30 H 0.090 0.910 31 H 0.144 0.856 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.341 -3.924 6.469 9.872 hybrid contribution 1.048 0.048 1.212 1.603 sum -5.293 -3.876 7.681 10.101 Atomic orbital electron populations 1.21666 0.92953 1.02769 1.02341 1.21780 0.97539 0.95867 1.01508 1.21961 0.80203 0.98463 1.02987 1.43871 1.05838 1.62924 1.04803 1.20094 1.08359 1.39597 0.87701 0.93183 1.27580 0.94988 0.93471 1.05975 1.70848 1.39146 1.12266 1.28280 0.83006 0.77307 0.75746 0.70773 1.20526 1.19098 1.19715 1.20952 0.87955 0.81110 0.86502 1.90454 1.16728 1.56297 1.87743 1.22596 0.99136 1.00795 0.92843 0.86736 1.22919 1.00157 1.00188 0.94866 1.23550 0.83837 0.94023 1.01501 1.89058 1.33069 1.85477 1.22261 1.23313 1.01846 0.93517 0.82464 0.93095 0.90946 0.91185 0.93515 0.92055 0.89973 0.91084 0.92645 0.88011 0.90999 0.85569 0.93161 0.94361 0.86376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.91 71.98 0.71 -2.86 16 2 C -0.13 -4.39 6.18 30.60 0.19 -4.20 16 3 C 0.09 3.55 4.39 86.38 0.38 3.93 16 4 N -0.46 -23.00 2.37 -635.53 -1.51 -24.51 16 5 C -0.43 -24.62 8.80 84.04 0.74 -23.88 16 6 H 0.05 3.15 7.82 -2.91 -0.02 3.12 16 7 C -0.02 -0.84 4.73 84.93 0.40 -0.44 16 8 N -0.87 -48.29 12.15 21.66 0.26 -48.02 16 9 Si 1.11 47.56 30.02 68.60 2.06 49.62 16 10 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 12 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 13 C 0.44 21.88 6.79 87.66 0.60 22.47 16 14 O -0.63 -36.33 15.19 -3.08 -0.05 -36.37 16 15 C -0.13 -4.76 2.56 -10.52 -0.03 -4.79 16 16 H 0.11 3.60 6.84 -2.39 -0.02 3.58 16 17 C -0.14 -4.56 6.66 31.61 0.21 -4.35 16 18 C 0.05 1.32 7.63 72.48 0.55 1.88 16 19 O -0.38 -11.95 11.65 -148.98 -1.74 -13.68 16 20 C 0.07 2.20 6.28 72.48 0.45 2.66 16 21 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 23 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.06 1.96 7.26 -2.38 -0.02 1.95 16 26 H 0.08 2.86 4.55 -2.39 -0.01 2.85 16 27 H 0.07 3.26 5.46 -2.38 -0.01 3.24 16 28 H 0.26 14.93 7.57 -92.70 -0.70 14.23 16 29 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.07 2.73 6.56 -2.39 -0.02 2.71 16 31 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.04 1.47 7.86 -2.39 -0.02 1.45 16 34 H 0.12 3.35 6.68 -2.39 -0.02 3.33 16 Total: -1.00 -69.12 274.24 4.40 -64.72 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 1.15 Total: 17.82 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: 4.21 Total: -9.58 kcal Atomic # 7 Polarization: -71.29 SS G_CDS: -1.24 Total: -72.53 kcal Atomic # 8 Polarization: -48.27 SS G_CDS: -1.78 Total: -50.05 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.06 Total: 49.62 kcal Total: -69.12 4.40 -64.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045092363.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.934 kcal (2) G-P(sol) polarization free energy of solvation -69.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds