Wall clock time and date at job start Mon Mar 30 2020 02:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46965 * 2 1 4 4 H 1.08993 * 109.45786 * 304.96969 * 3 2 1 5 5 C 1.53042 * 109.45996 * 64.93120 * 3 2 1 6 6 C 1.53183 * 109.31388 * 181.38474 * 5 3 2 7 7 N 1.46932 * 108.77686 * 305.36594 * 6 5 3 8 8 C 1.36933 * 120.63356 * 233.58630 * 7 6 5 9 9 H 1.07998 * 120.00044 * 151.86070 * 8 7 6 10 10 C 1.38818 * 119.99796 * 331.85914 * 8 7 6 11 11 N 1.31621 * 120.00220 * 343.06520 * 10 8 7 12 12 Si 1.86800 * 120.00164 * 163.05767 * 10 8 7 13 13 H 1.48498 * 109.46813 * 89.99879 * 12 10 8 14 14 H 1.48497 * 109.47638 * 210.00276 * 12 10 8 15 15 H 1.48500 * 109.47027 * 330.00384 * 12 10 8 16 16 C 1.46931 * 118.73766 * 53.60773 * 7 6 5 17 17 H 1.08993 * 109.70230 * 186.54088 * 16 7 6 18 18 C 1.50698 * 109.58840 * 66.17900 * 16 7 6 19 19 O 1.20829 * 119.99662 * 340.71114 * 18 16 7 20 20 O 1.34225 * 119.99936 * 160.71396 * 18 16 7 21 21 C 1.53037 * 109.45776 * 184.99928 * 3 2 1 22 22 H 1.08998 * 109.47282 * 59.99952 * 1 2 3 23 23 H 1.09004 * 109.46796 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46926 * 300.00050 * 1 2 3 25 25 H 1.09003 * 109.47086 * 119.99336 * 2 1 3 26 26 H 1.08998 * 109.47581 * 240.00242 * 2 1 3 27 27 H 1.09002 * 109.49671 * 301.33646 * 5 3 2 28 28 H 1.09002 * 109.49349 * 61.43242 * 5 3 2 29 29 H 1.08998 * 109.58925 * 185.57835 * 6 5 3 30 30 H 1.09000 * 109.58519 * 65.15168 * 6 5 3 31 31 H 0.96996 * 120.00300 * 180.02562 * 11 10 8 32 32 H 0.96704 * 116.99920 * 180.02562 * 20 18 16 33 33 H 1.09004 * 109.49814 * 298.56224 * 21 3 2 34 34 H 1.08997 * 109.49871 * 58.63273 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6057 1.9812 -0.8421 5 6 1.6335 2.1271 1.3071 6 6 2.1156 3.5810 1.2889 7 7 3.5607 3.5968 1.0234 8 6 4.4171 4.2576 1.8630 9 1 5.4401 3.9258 1.9614 10 6 3.9703 5.3541 2.5877 11 7 2.8575 5.9644 2.2389 12 14 4.9483 5.9635 4.0579 13 1 5.9372 6.9763 3.6092 14 1 4.0255 6.5767 5.0466 15 1 5.6597 4.8217 4.6868 16 6 4.0693 2.8903 -0.1603 17 1 5.1591 2.8977 -0.1524 18 6 3.5684 3.5703 -1.4084 19 8 2.6084 4.3020 -1.3539 20 8 4.1886 3.3629 -2.5805 21 6 3.5652 1.4441 -0.1257 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5137 0.8901 26 1 1.8934 -0.5138 -0.8900 27 1 0.5483 2.1049 1.4072 28 1 2.0877 1.6036 2.1484 29 1 1.9165 4.0441 2.2552 30 1 1.5940 4.1291 0.5043 31 1 2.5455 6.7308 2.7450 32 1 3.8311 3.8212 -3.3535 33 1 4.0012 0.9272 0.7291 34 1 3.8549 0.9354 -1.0451 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167715373.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:58 Heat of formation + Delta-G solvation = -108.271620 kcal Electronic energy + Delta-G solvation = -16924.183878 eV Core-core repulsion = 14242.086567 eV Total energy + Delta-G solvation = -2682.097311 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.35396 -39.08331 -36.79766 -36.06689 -33.76220 -31.81939 -30.90139 -27.52394 -25.22165 -24.21721 -23.30182 -21.45924 -20.70505 -18.92259 -18.48004 -17.12667 -16.72099 -16.49712 -15.83748 -15.42383 -15.21262 -14.69359 -14.49551 -14.22843 -13.88891 -13.40908 -13.04212 -12.95892 -12.62115 -12.57141 -12.34179 -12.28837 -12.08673 -12.07513 -11.73685 -11.53028 -11.27409 -10.97022 -10.91312 -10.44991 -8.76625 -7.90787 -5.42220 1.46127 1.47144 1.52762 1.58758 2.33640 2.51603 3.28238 3.53620 3.87860 4.00445 4.09816 4.43690 4.52392 4.55770 4.62538 4.69535 4.81873 4.95181 4.97097 5.08260 5.14869 5.23507 5.26951 5.35580 5.47380 5.53466 5.58044 5.66952 5.73233 5.98188 6.32019 7.06219 7.27041 7.75687 8.27457 9.13079 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.026766 B = 0.010163 C = 0.008532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.849505 B = 2754.549280 C = 3280.907950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.109 4.109 3 C -0.081 4.081 4 H 0.041 0.959 5 C -0.123 4.123 6 C 0.169 3.831 7 N -0.572 5.572 8 C -0.279 4.279 9 H 0.081 0.919 10 C -0.047 4.047 11 N -0.926 5.926 12 Si 0.974 3.026 13 H -0.285 1.285 14 H -0.294 1.294 15 H -0.262 1.262 16 C 0.167 3.833 17 H 0.102 0.898 18 C 0.451 3.549 19 O -0.546 6.546 20 O -0.521 6.521 21 C -0.103 4.103 22 H 0.045 0.955 23 H 0.069 0.931 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.008 0.992 31 H 0.250 0.750 32 H 0.408 0.592 33 H 0.086 0.914 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.140 -11.893 -5.183 12.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.147 4.147 3 C -0.100 4.100 4 H 0.059 0.941 5 C -0.162 4.162 6 C 0.044 3.956 7 N -0.293 5.293 8 C -0.409 4.409 9 H 0.098 0.902 10 C -0.243 4.243 11 N -0.570 5.570 12 Si 0.801 3.199 13 H -0.212 1.212 14 H -0.220 1.220 15 H -0.186 1.186 16 C 0.056 3.944 17 H 0.120 0.880 18 C 0.292 3.708 19 O -0.435 6.435 20 O -0.333 6.333 21 C -0.142 4.142 22 H 0.064 0.936 23 H 0.088 0.912 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.026 0.974 31 H 0.059 0.941 32 H 0.268 0.732 33 H 0.105 0.895 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.044 -11.748 -4.731 12.665 hybrid contribution -0.114 1.643 0.043 1.648 sum -0.158 -10.105 -4.688 11.141 Atomic orbital electron populations 1.21805 0.95781 1.01985 1.01366 1.21518 0.96083 0.94397 1.02669 1.21082 0.95260 0.96855 0.96817 0.94087 1.22070 0.99678 0.96762 0.97641 1.20774 0.82810 0.93189 0.98809 1.44364 1.03928 1.59702 1.21267 1.19658 0.95614 1.07668 1.17929 0.90181 1.26045 0.98971 0.95942 1.03376 1.70297 1.25269 1.21139 1.40262 0.85190 0.77587 0.78273 0.78825 1.21151 1.22035 1.18588 1.20824 0.99441 0.93230 0.80907 0.88023 1.26339 0.80134 0.78789 0.85576 1.90641 1.29137 1.37470 1.86234 1.84623 1.59990 1.69366 1.19353 1.21909 0.95720 0.92893 1.03680 0.93625 0.91155 0.93240 0.91189 0.90768 0.92059 0.92325 0.93348 0.97385 0.94091 0.73176 0.89549 0.89116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.67 71.98 0.70 -2.82 16 2 C -0.11 -2.67 5.40 30.60 0.17 -2.50 16 3 C -0.08 -2.68 1.99 -10.76 -0.02 -2.70 16 4 H 0.04 1.53 7.10 -2.39 -0.02 1.51 16 5 C -0.12 -4.77 5.14 30.67 0.16 -4.61 16 6 C 0.17 8.65 4.80 86.36 0.41 9.07 16 7 N -0.57 -28.95 2.56 -679.38 -1.74 -30.69 16 8 C -0.28 -15.24 9.59 84.04 0.81 -14.44 16 9 H 0.08 4.11 7.89 -2.91 -0.02 4.09 16 10 C -0.05 -2.63 4.92 84.86 0.42 -2.21 16 11 N -0.93 -56.68 11.20 21.65 0.24 -56.43 16 12 Si 0.97 44.75 29.59 68.60 2.03 46.78 16 13 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 14 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 15 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 16 C 0.17 6.86 3.20 44.23 0.14 7.00 16 17 H 0.10 3.95 7.94 -2.39 -0.02 3.93 16 18 C 0.45 18.96 6.64 71.24 0.47 19.43 16 19 O -0.55 -27.88 14.72 21.95 0.32 -27.56 16 20 O -0.52 -16.69 13.42 -51.37 -0.69 -17.38 16 21 C -0.10 -3.30 4.82 30.67 0.15 -3.15 16 22 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 24 H 0.05 1.22 6.53 -2.39 -0.02 1.21 16 25 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 2.22 6.50 -2.39 -0.02 2.20 16 28 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.05 2.78 6.06 -2.39 -0.01 2.76 16 30 H 0.01 0.46 6.16 -2.39 -0.01 0.45 16 31 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 32 H 0.41 9.58 9.10 -74.05 -0.67 8.91 16 33 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16 34 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -70.17 271.57 3.98 -66.19 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.42 Total: 16.01 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 3.40 Total: 3.07 kcal Atomic # 7 Polarization: -85.63 SS G_CDS: -1.50 Total: -87.12 kcal Atomic # 8 Polarization: -44.57 SS G_CDS: -0.37 Total: -44.93 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -70.17 3.98 -66.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167715373.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.079 kcal (2) G-P(sol) polarization free energy of solvation -70.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds