Wall clock time and date at job start Mon Mar 30 2020 02:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46905 * 2 1 4 4 H 1.09004 * 109.46868 * 55.00114 * 3 2 1 5 5 C 1.53004 * 109.47108 * 174.99731 * 3 2 1 6 6 N 1.46497 * 109.47387 * 295.00030 * 3 2 1 7 7 C 1.46086 * 118.73143 * 119.99981 * 6 3 2 8 8 C 1.53028 * 109.92523 * 161.66668 * 7 6 3 9 9 H 1.09000 * 109.73251 * 289.32519 * 8 7 6 10 10 C 1.50701 * 109.60503 * 168.91760 * 8 7 6 11 11 H 1.08002 * 119.99526 * 0.81562 * 10 8 7 12 12 C 1.37877 * 119.99963 * 180.81590 * 10 8 7 13 13 N 1.31518 * 119.99972 * 359.97438 * 12 10 8 14 14 Si 1.86795 * 119.99947 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47099 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46971 * 120.00197 * 14 12 10 17 17 H 1.48501 * 109.47054 * 240.00221 * 14 12 10 18 18 O 1.43242 * 108.66814 * 49.16167 * 8 7 6 19 19 C 1.42965 * 112.98656 * 291.63654 * 18 8 7 20 20 C 1.33874 * 118.72501 * 300.02209 * 6 3 2 21 21 O 1.21273 * 118.83829 * 1.86141 * 20 6 3 22 22 H 1.09007 * 109.46790 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47186 * 300.00079 * 1 2 3 24 24 H 1.08996 * 109.47168 * 60.00228 * 1 2 3 25 25 H 1.08995 * 109.47186 * 239.99921 * 2 1 3 26 26 H 1.09005 * 109.46976 * 119.99594 * 2 1 3 27 27 H 1.09000 * 109.46765 * 179.97438 * 5 3 2 28 28 H 1.09001 * 109.46928 * 299.99988 * 5 3 2 29 29 H 1.09000 * 109.46666 * 59.99741 * 5 3 2 30 30 H 1.09000 * 109.39836 * 41.52456 * 7 6 3 31 31 H 1.09001 * 109.39421 * 281.79812 * 7 6 3 32 32 H 0.96998 * 119.99959 * 179.97438 * 13 12 10 33 33 H 1.09002 * 109.41681 * 169.70768 * 19 18 8 34 34 H 1.09003 * 109.41651 * 289.49672 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5649 1.4444 0.1258 6 7 1.6524 2.0975 -1.2518 7 6 0.8051 3.2859 -1.1894 8 6 0.8933 4.0590 -2.5071 9 1 1.8747 4.5252 -2.5952 10 6 -0.1758 5.1205 -2.5431 11 1 -0.8440 5.2425 -1.7034 12 6 -0.3007 5.9359 -3.6479 13 7 0.5134 5.7876 -4.6701 14 14 -1.6264 7.2512 -3.6928 15 1 -2.4043 7.2133 -2.4285 16 1 -0.9941 8.5862 -3.8445 17 1 -2.5342 7.0000 -4.8409 18 8 0.6974 3.1426 -3.5904 19 6 1.7739 2.2133 -3.7372 20 6 2.0882 1.5836 -2.4086 21 8 2.7602 0.5744 -2.3841 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 3.9281 2.4721 0.1253 28 1 3.8532 0.9571 1.0572 29 1 3.9994 0.9053 -0.7160 30 1 1.1376 3.9251 -0.3716 31 1 -0.2280 2.9850 -1.0149 32 1 0.4252 6.3609 -5.4475 33 1 1.4884 1.4374 -4.4475 34 1 2.6557 2.7359 -4.1081 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219546460.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:57 Heat of formation + Delta-G solvation = -84.803291 kcal Electronic energy + Delta-G solvation = -16800.618823 eV Core-core repulsion = 14119.539175 eV Total energy + Delta-G solvation = -2681.079648 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.14790 -36.75074 -35.83980 -32.77035 -32.51806 -29.89597 -29.16994 -26.24047 -24.96242 -23.49154 -22.42098 -20.47375 -18.07329 -17.28392 -16.06751 -15.83340 -15.32890 -14.72051 -14.38351 -14.02513 -13.77581 -13.32620 -13.12262 -12.87532 -12.51481 -12.26384 -11.95588 -11.60425 -11.35268 -11.08829 -11.01582 -10.98869 -10.71985 -10.64591 -10.38723 -9.99018 -9.38437 -9.23420 -8.64641 -8.21490 -8.00971 -6.19280 -4.33565 3.14217 3.22167 3.30379 3.33239 3.50784 4.29128 4.90983 4.92511 5.24736 5.30912 5.42833 5.50693 5.61162 5.72571 5.85668 5.88475 6.00834 6.06249 6.13117 6.14841 6.23239 6.26121 6.34116 6.44196 6.53116 6.58037 7.07729 7.13232 7.70592 7.80252 8.10306 8.45960 8.67581 8.84529 9.38287 10.88982 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.040102 B = 0.007911 C = 0.007390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.045864 B = 3538.572347 C = 3787.785166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.142 4.142 3 C 0.141 3.859 4 H 0.080 0.920 5 C -0.168 4.168 6 N -0.596 5.596 7 C 0.088 3.912 8 C 0.206 3.794 9 H 0.026 0.974 10 C -0.531 4.531 11 H 0.070 0.930 12 C 0.080 3.920 13 N -0.857 5.857 14 Si 0.899 3.101 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.281 1.281 18 O -0.351 6.351 19 C 0.044 3.956 20 C 0.492 3.508 21 O -0.565 6.565 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.057 0.943 25 H 0.089 0.911 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.264 0.736 33 H 0.105 0.895 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.702 -5.825 7.458 9.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.180 4.180 3 C 0.037 3.963 4 H 0.098 0.902 5 C -0.226 4.226 6 N -0.328 5.328 7 C -0.034 4.034 8 C 0.150 3.850 9 H 0.043 0.957 10 C -0.568 4.568 11 H 0.088 0.912 12 C -0.128 4.128 13 N -0.493 5.493 14 Si 0.726 3.274 15 H -0.195 1.195 16 H -0.208 1.208 17 H -0.207 1.207 18 O -0.269 6.269 19 C -0.037 4.037 20 C 0.282 3.718 21 O -0.446 6.446 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.108 0.892 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.123 0.877 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.913 -6.245 7.175 9.703 hybrid contribution -0.491 0.771 0.122 0.922 sum 1.423 -5.475 7.297 9.233 Atomic orbital electron populations 1.21727 0.95963 1.00984 1.01856 1.21977 0.95948 0.96665 1.03435 1.21083 0.95095 0.93619 0.86464 0.90231 1.22182 0.95651 1.02028 1.02713 1.47791 1.50374 1.29173 1.05498 1.22524 0.93529 0.85041 1.02311 1.20097 0.98490 0.86316 0.80097 0.95675 1.20862 1.18352 1.13820 1.03755 0.91170 1.25061 0.95689 0.96866 0.95154 1.70026 1.36052 1.37497 1.05685 0.86434 0.81570 0.80991 0.78388 1.19455 1.20781 1.20666 1.88599 1.39498 1.44584 1.54216 1.22509 0.94600 0.94168 0.92381 1.21427 0.78829 0.84252 0.87318 1.90528 1.40577 1.25576 1.87941 0.93259 0.93290 0.92384 0.89218 0.92019 0.92930 0.92413 0.90267 0.91328 0.91787 0.92637 0.87692 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.80 37.16 0.36 -1.74 16 2 C -0.14 -2.11 5.25 -26.73 -0.14 -2.25 16 3 C 0.14 2.20 2.63 -67.93 -0.18 2.02 16 4 H 0.08 1.12 7.85 -51.93 -0.41 0.71 16 5 C -0.17 -2.49 9.10 37.16 0.34 -2.15 16 6 N -0.60 -11.11 2.25 -166.83 -0.38 -11.49 16 7 C 0.09 1.74 5.81 -4.25 -0.02 1.72 16 8 C 0.21 4.98 2.53 -27.87 -0.07 4.91 16 9 H 0.03 0.66 8.10 -51.93 -0.42 0.24 16 10 C -0.53 -13.86 8.78 -34.44 -0.30 -14.16 16 11 H 0.07 1.75 7.75 -52.49 -0.41 1.34 16 12 C 0.08 2.12 5.40 -17.82 -0.10 2.03 16 13 N -0.86 -24.04 12.84 55.43 0.71 -23.33 16 14 Si 0.90 20.25 29.54 -169.99 -5.02 15.22 16 15 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 O -0.35 -8.75 9.90 -35.23 -0.35 -9.10 16 19 C 0.04 0.92 6.98 35.84 0.25 1.18 16 20 C 0.49 10.00 7.00 -11.56 -0.08 9.92 16 21 O -0.56 -11.88 12.75 5.56 0.07 -11.81 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.95 7.75 -51.93 -0.40 0.55 16 25 H 0.09 1.56 5.83 -51.93 -0.30 1.26 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.08 1.35 6.08 -51.93 -0.32 1.03 16 30 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 31 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 32 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.11 2.01 8.14 -51.93 -0.42 1.59 16 34 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 276.74 15.07 4.17 4.17 Total: -1.00 -28.77 276.74 -5.92 -34.70 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -5.19 Total: 0.16 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 0.06 Total: 1.48 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.34 Total: -34.82 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.28 Total: -20.91 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.77 -5.92 -34.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219546460.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.107 kcal (2) G-P(sol) polarization free energy of solvation -28.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds