Wall clock time and date at job start Mon Mar 30 2020 02:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46905 * 2 1 4 4 H 1.09004 * 109.46868 * 55.00114 * 3 2 1 5 5 C 1.53004 * 109.47108 * 174.99731 * 3 2 1 6 6 N 1.46497 * 109.47387 * 295.00030 * 3 2 1 7 7 C 1.46086 * 118.73143 * 119.99981 * 6 3 2 8 8 C 1.53028 * 109.92523 * 161.66668 * 7 6 3 9 9 H 1.09000 * 109.73251 * 289.32519 * 8 7 6 10 10 C 1.50701 * 109.60503 * 168.91760 * 8 7 6 11 11 H 1.08002 * 119.99526 * 0.81562 * 10 8 7 12 12 C 1.37877 * 119.99963 * 180.81590 * 10 8 7 13 13 N 1.31518 * 119.99972 * 359.97438 * 12 10 8 14 14 Si 1.86795 * 119.99947 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47099 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46971 * 120.00197 * 14 12 10 17 17 H 1.48501 * 109.47054 * 240.00221 * 14 12 10 18 18 O 1.43242 * 108.66814 * 49.16167 * 8 7 6 19 19 C 1.42965 * 112.98656 * 291.63654 * 18 8 7 20 20 C 1.33874 * 118.72501 * 300.02209 * 6 3 2 21 21 O 1.21273 * 118.83829 * 1.86141 * 20 6 3 22 22 H 1.09007 * 109.46790 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47186 * 300.00079 * 1 2 3 24 24 H 1.08996 * 109.47168 * 60.00228 * 1 2 3 25 25 H 1.08995 * 109.47186 * 239.99921 * 2 1 3 26 26 H 1.09005 * 109.46976 * 119.99594 * 2 1 3 27 27 H 1.09000 * 109.46765 * 179.97438 * 5 3 2 28 28 H 1.09001 * 109.46928 * 299.99988 * 5 3 2 29 29 H 1.09000 * 109.46666 * 59.99741 * 5 3 2 30 30 H 1.09000 * 109.39836 * 41.52456 * 7 6 3 31 31 H 1.09001 * 109.39421 * 281.79812 * 7 6 3 32 32 H 0.96998 * 119.99959 * 179.97438 * 13 12 10 33 33 H 1.09002 * 109.41681 * 169.70768 * 19 18 8 34 34 H 1.09003 * 109.41651 * 289.49672 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5649 1.4444 0.1258 6 7 1.6524 2.0975 -1.2518 7 6 0.8051 3.2859 -1.1894 8 6 0.8933 4.0590 -2.5071 9 1 1.8747 4.5252 -2.5952 10 6 -0.1758 5.1205 -2.5431 11 1 -0.8440 5.2425 -1.7034 12 6 -0.3007 5.9359 -3.6479 13 7 0.5134 5.7876 -4.6701 14 14 -1.6264 7.2512 -3.6928 15 1 -2.4043 7.2133 -2.4285 16 1 -0.9941 8.5862 -3.8445 17 1 -2.5342 7.0000 -4.8409 18 8 0.6974 3.1426 -3.5904 19 6 1.7739 2.2133 -3.7372 20 6 2.0882 1.5836 -2.4086 21 8 2.7602 0.5744 -2.3841 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 3.9281 2.4721 0.1253 28 1 3.8532 0.9571 1.0572 29 1 3.9994 0.9053 -0.7160 30 1 1.1376 3.9251 -0.3716 31 1 -0.2280 2.9850 -1.0149 32 1 0.4252 6.3609 -5.4475 33 1 1.4884 1.4374 -4.4475 34 1 2.6557 2.7359 -4.1081 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219546460.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:57 Heat of formation + Delta-G solvation = -102.664111 kcal Electronic energy + Delta-G solvation = -16801.393327 eV Core-core repulsion = 14119.539175 eV Total energy + Delta-G solvation = -2681.854151 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.71410 -38.52620 -37.28577 -34.74424 -33.97654 -31.32963 -30.74414 -27.95470 -26.76052 -24.77522 -23.99935 -21.96044 -19.69489 -19.12549 -17.79544 -17.40075 -16.86616 -16.55535 -16.04949 -15.53249 -15.39426 -14.70031 -14.47668 -14.41036 -14.08473 -13.87223 -13.28277 -13.05088 -12.95636 -12.79900 -12.64724 -12.40283 -12.15598 -11.98073 -11.85015 -11.70944 -11.17960 -11.00564 -10.59750 -9.87470 -9.59665 -8.19925 -6.40815 1.45280 1.47512 1.53326 1.59362 2.00840 2.41634 2.99105 3.50495 3.65199 3.93125 4.10827 4.13438 4.25111 4.38666 4.46852 4.50403 4.52748 4.64141 4.72326 4.76603 4.79591 5.00368 5.08217 5.16624 5.28005 5.33248 5.39282 5.69840 5.71918 5.93623 6.39540 6.60365 6.84247 7.14602 7.35776 8.89282 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.040102 B = 0.007911 C = 0.007390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.045864 B = 3538.572347 C = 3787.785166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.132 3.868 4 H 0.105 0.895 5 C -0.162 4.162 6 N -0.592 5.592 7 C 0.102 3.898 8 C 0.201 3.799 9 H -0.004 1.004 10 C -0.547 4.547 11 H 0.080 0.920 12 C 0.026 3.974 13 N -0.897 5.897 14 Si 0.968 3.032 15 H -0.257 1.257 16 H -0.278 1.278 17 H -0.283 1.283 18 O -0.378 6.378 19 C 0.041 3.959 20 C 0.491 3.509 21 O -0.574 6.574 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.028 0.972 25 H 0.060 0.940 26 H 0.090 0.910 27 H 0.049 0.951 28 H 0.089 0.911 29 H 0.052 0.948 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.264 0.736 33 H 0.120 0.880 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.975 -5.965 9.510 11.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C 0.030 3.970 4 H 0.123 0.877 5 C -0.220 4.220 6 N -0.324 5.324 7 C -0.020 4.020 8 C 0.145 3.855 9 H 0.014 0.986 10 C -0.584 4.584 11 H 0.098 0.902 12 C -0.178 4.178 13 N -0.534 5.534 14 Si 0.792 3.208 15 H -0.181 1.181 16 H -0.203 1.203 17 H -0.209 1.209 18 O -0.297 6.297 19 C -0.039 4.039 20 C 0.280 3.720 21 O -0.456 6.456 22 H 0.080 0.920 23 H 0.086 0.914 24 H 0.048 0.952 25 H 0.079 0.921 26 H 0.109 0.891 27 H 0.068 0.932 28 H 0.107 0.893 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.137 0.863 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.188 -6.392 9.260 11.314 hybrid contribution -0.216 0.759 -0.507 0.938 sum 0.972 -5.633 8.752 10.454 Atomic orbital electron populations 1.21695 0.95471 1.01706 1.01275 1.21924 0.96304 0.95915 1.03387 1.21430 0.95859 0.94236 0.85459 0.87664 1.22127 0.94825 1.01828 1.03201 1.47785 1.49637 1.28720 1.06254 1.22256 0.94129 0.85316 1.00339 1.20010 0.96527 0.86798 0.82120 0.98604 1.21305 1.18622 1.14431 1.04046 0.90192 1.25950 0.97806 0.99146 0.94855 1.70155 1.37962 1.38834 1.06418 0.85371 0.78700 0.78137 0.78591 1.18060 1.20318 1.20947 1.88506 1.40909 1.45286 1.54989 1.22621 0.93607 0.93891 0.93830 1.21153 0.79141 0.84215 0.87536 1.90535 1.41105 1.25845 1.88102 0.92015 0.91447 0.95237 0.92112 0.89116 0.93194 0.89259 0.92887 0.89093 0.91383 0.92682 0.86271 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 9.80 71.98 0.71 -3.03 16 2 C -0.14 -3.72 5.25 30.60 0.16 -3.56 16 3 C 0.13 3.79 2.63 44.99 0.12 3.90 16 4 H 0.11 2.52 7.85 -2.38 -0.02 2.50 16 5 C -0.16 -4.42 9.10 71.98 0.65 -3.77 16 6 N -0.59 -21.42 2.25 -800.61 -1.80 -23.22 16 7 C 0.10 3.91 5.81 86.47 0.50 4.41 16 8 C 0.20 9.84 2.53 29.86 0.08 9.91 16 9 H 0.00 -0.20 8.10 -2.39 -0.02 -0.22 16 10 C -0.55 -28.49 8.78 25.60 0.22 -28.27 16 11 H 0.08 3.90 7.75 -2.91 -0.02 3.87 16 12 C 0.03 1.38 5.40 84.65 0.46 1.83 16 13 N -0.90 -51.31 12.84 21.45 0.28 -51.03 16 14 Si 0.97 41.39 29.54 68.60 2.03 43.42 16 15 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 16 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 17 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 18 O -0.38 -19.26 9.90 -148.98 -1.47 -20.73 16 19 C 0.04 1.75 6.98 71.13 0.50 2.24 16 20 C 0.49 19.92 7.00 87.69 0.61 20.53 16 21 O -0.57 -24.08 12.75 -3.01 -0.04 -24.12 16 22 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 23 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.03 0.92 7.75 -2.39 -0.02 0.90 16 25 H 0.06 2.04 5.83 -2.39 -0.01 2.02 16 26 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 27 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.05 1.74 6.08 -2.39 -0.01 1.73 16 30 H 0.09 3.07 8.10 -2.39 -0.02 3.05 16 31 H 0.07 2.58 8.10 -2.39 -0.02 2.56 16 32 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 33 H 0.12 4.66 8.14 -2.39 -0.02 4.65 16 34 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -62.03 276.74 4.06 -57.96 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 1.07 Total: 13.51 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 4.01 Total: 4.22 kcal Atomic # 7 Polarization: -72.73 SS G_CDS: -1.53 Total: -74.25 kcal Atomic # 8 Polarization: -43.34 SS G_CDS: -1.51 Total: -44.86 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -62.03 4.06 -57.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219546460.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.701 kcal (2) G-P(sol) polarization free energy of solvation -62.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds