Wall clock time and date at job start Mon Mar 30 2020 02:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47131 * 2 1 4 4 O 1.42902 * 109.47548 * 240.00303 * 2 1 3 5 5 C 1.50706 * 109.47360 * 119.99934 * 2 1 3 6 6 O 1.21280 * 120.00214 * 260.71838 * 5 2 1 7 7 N 1.34779 * 119.99630 * 80.70966 * 5 2 1 8 8 C 1.46502 * 119.99657 * 184.84659 * 7 5 2 9 9 C 1.50698 * 109.47198 * 270.00015 * 8 7 5 10 10 H 1.08006 * 120.00061 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00147 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99572 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00265 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47519 * 59.99518 * 13 11 9 15 15 H 1.48496 * 109.47299 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47128 * 299.99720 * 13 11 9 17 17 C 1.46494 * 120.00024 * 4.85258 * 7 5 2 18 18 C 1.53005 * 117.49695 * 182.96403 * 17 7 5 19 19 C 1.53001 * 117.50341 * 114.34142 * 17 7 5 20 20 H 1.08998 * 109.47435 * 299.99732 * 1 2 3 21 21 H 1.09001 * 109.47251 * 59.99611 * 1 2 3 22 22 H 1.08999 * 109.46962 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.47169 * 175.01073 * 3 2 1 24 24 H 1.08989 * 109.47519 * 295.01573 * 3 2 1 25 25 H 1.09005 * 109.47134 * 55.01953 * 3 2 1 26 26 H 0.96694 * 113.99777 * 59.99562 * 4 2 1 27 27 H 1.08994 * 109.47309 * 30.00462 * 8 7 5 28 28 H 1.09005 * 109.46791 * 150.00625 * 8 7 5 29 29 H 0.97003 * 119.99774 * 179.97438 * 12 11 9 30 30 H 1.09002 * 115.55399 * 328.66025 * 17 7 5 31 31 H 1.08996 * 117.50041 * 359.97438 * 18 17 7 32 32 H 1.08999 * 117.50277 * 145.02228 * 18 17 7 33 33 H 1.09001 * 117.49828 * 214.98043 * 19 17 7 34 34 H 1.08997 * 117.49263 * 359.96541 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0324 -0.7104 1.2305 6 8 2.3942 -0.0704 2.1950 7 7 2.0793 -2.0571 1.2591 8 6 2.4663 -2.7505 2.4902 9 6 3.9600 -2.9494 2.5065 10 1 4.5611 -2.5944 1.6823 11 6 4.5594 -3.5845 3.5734 12 7 3.8276 -4.0163 4.5771 13 14 6.4110 -3.8305 3.5938 14 1 7.0866 -2.5093 3.5373 15 1 6.8031 -4.5345 4.8411 16 1 6.8153 -4.6438 2.4190 17 6 1.7435 -2.8274 0.0591 18 6 1.7483 -4.3530 0.1747 19 6 2.8626 -3.6406 -0.5945 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 3.1264 1.4438 0.0894 24 1 1.7514 1.9300 -0.9311 25 1 1.6056 1.9815 0.8420 26 1 1.7210 -0.2700 -1.9979 27 1 2.1700 -2.1530 3.3523 28 1 1.9702 -3.7202 2.5323 29 1 4.2492 -4.4635 5.3276 30 1 1.0009 -2.3745 -0.5977 31 1 2.0017 -4.7836 1.1435 32 1 1.0087 -4.9042 -0.4061 33 1 2.8560 -3.7229 -1.6814 34 1 3.8488 -3.6020 -0.1320 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232556377.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:14 Heat of formation + Delta-G solvation = -55.400281 kcal Electronic energy + Delta-G solvation = -16805.358922 eV Core-core repulsion = 14125.554284 eV Total energy + Delta-G solvation = -2679.804638 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.72022 -37.00150 -36.47405 -33.11740 -31.86334 -31.65799 -27.69018 -27.06616 -23.90442 -22.36074 -21.69025 -20.83328 -18.30628 -17.15101 -16.47858 -16.12330 -15.36747 -14.71278 -14.14243 -13.90019 -13.75552 -13.31073 -13.22974 -12.31607 -12.24501 -11.97987 -11.71141 -11.58583 -11.29365 -11.20428 -10.94941 -10.83064 -10.38419 -10.33846 -10.16377 -9.91625 -9.61380 -9.37168 -8.82329 -8.37773 -7.42046 -5.99721 -4.03261 3.26184 3.35667 3.39136 3.43957 3.90711 4.32008 4.48695 4.66928 4.85868 5.07170 5.14785 5.34316 5.53061 5.57499 5.63305 5.72212 5.78393 5.88734 5.94649 6.12573 6.25738 6.36564 6.41549 6.79263 6.93712 7.15556 7.46143 7.60073 7.70286 7.97263 8.28185 8.49696 8.93711 9.11378 9.60911 11.08214 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.029904 B = 0.009376 C = 0.008443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.090315 B = 2985.746985 C = 3315.734251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.108 3.892 3 C -0.159 4.159 4 O -0.540 6.540 5 C 0.525 3.475 6 O -0.535 6.535 7 N -0.558 5.558 8 C 0.240 3.760 9 C -0.518 4.518 10 H 0.057 0.943 11 C 0.060 3.940 12 N -0.896 5.896 13 Si 0.896 3.104 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.092 3.908 18 C -0.196 4.196 19 C -0.181 4.181 20 H 0.070 0.930 21 H 0.065 0.935 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.368 0.632 27 H 0.041 0.959 28 H 0.039 0.961 29 H 0.263 0.737 30 H 0.125 0.875 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.140 4.655 -12.432 15.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.064 3.936 3 C -0.217 4.217 4 O -0.345 6.345 5 C 0.311 3.689 6 O -0.413 6.413 7 N -0.287 5.287 8 C 0.121 3.879 9 C -0.557 4.557 10 H 0.076 0.924 11 C -0.141 4.141 12 N -0.536 5.536 13 Si 0.724 3.276 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.202 1.202 17 C -0.014 4.014 18 C -0.234 4.234 19 C -0.220 4.220 20 H 0.089 0.911 21 H 0.084 0.916 22 H 0.087 0.913 23 H 0.086 0.914 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.216 0.784 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.142 0.858 31 H 0.128 0.872 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.662 4.494 -11.245 13.822 hybrid contribution 0.827 0.122 -0.382 0.919 sum -5.836 4.617 -11.628 13.805 Atomic orbital electron populations 1.22449 0.94378 1.03306 1.03012 1.21447 0.93767 0.92618 0.85729 1.22214 1.02983 0.94535 1.01972 1.86863 1.77302 1.55449 1.14924 1.19715 0.78886 0.82649 0.87684 1.90699 1.48265 1.65522 1.36830 1.47673 1.63791 1.04772 1.12476 1.19384 0.95571 0.92374 0.80550 1.21377 0.92243 1.37093 1.05000 0.92432 1.24924 0.98320 0.95631 0.95264 1.69923 1.35505 1.39517 1.08631 0.86584 0.85482 0.78317 0.77215 1.20235 1.21234 1.20237 1.21571 1.00771 0.89249 0.89761 1.23368 1.02010 0.94485 1.03504 1.23223 0.96394 1.04488 0.97879 0.91078 0.91598 0.91269 0.91426 0.92348 0.90902 0.78431 0.94086 0.94349 0.92751 0.85798 0.87155 0.89457 0.89825 0.87868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 8.62 37.16 0.32 -1.80 16 2 C 0.11 1.67 0.96 -91.77 -0.09 1.58 16 3 C -0.16 -2.23 8.21 37.16 0.30 -1.92 16 4 O -0.54 -7.39 9.65 -35.23 -0.34 -7.73 16 5 C 0.53 11.50 6.66 -10.98 -0.07 11.43 16 6 O -0.54 -13.90 15.77 5.56 0.09 -13.82 16 7 N -0.56 -12.53 2.79 -167.47 -0.47 -13.00 16 8 C 0.24 6.44 4.67 -5.19 -0.02 6.42 16 9 C -0.52 -14.99 8.70 -34.44 -0.30 -15.29 16 10 H 0.06 1.70 7.21 -52.48 -0.38 1.32 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 13 Si 0.90 22.41 29.54 -169.99 -5.02 17.39 16 14 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 C 0.09 1.67 4.54 -67.93 -0.31 1.36 16 18 C -0.20 -3.45 9.74 -26.73 -0.26 -3.71 16 19 C -0.18 -3.26 10.27 -26.73 -0.27 -3.53 16 20 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 21 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.07 0.86 6.86 -51.93 -0.36 0.50 16 23 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 24 H 0.06 0.59 8.14 -51.94 -0.42 0.17 16 25 H 0.07 1.05 8.05 -51.93 -0.42 0.63 16 26 H 0.37 3.09 9.04 45.56 0.41 3.50 16 27 H 0.04 1.24 7.49 -51.93 -0.39 0.85 16 28 H 0.04 1.03 5.99 -51.93 -0.31 0.72 16 29 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.12 1.91 4.99 -51.93 -0.26 1.65 16 31 H 0.11 2.28 6.11 -51.93 -0.32 1.97 16 32 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.10 2.20 6.93 -51.93 -0.36 1.84 16 LS Contribution 280.00 15.07 4.22 4.22 Total: -1.00 -33.57 280.00 -5.63 -39.20 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -4.05 Total: 3.74 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -0.80 Total: -3.81 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.27 Total: -39.20 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.25 Total: -21.54 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -33.57 -5.63 -39.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232556377.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.201 kcal (2) G-P(sol) polarization free energy of solvation -33.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds